diff options
Diffstat (limited to 'examples/clustering/clustering_tree.py')
| -rw-r--r-- | examples/clustering/clustering_tree.py | 16 |
1 files changed, 8 insertions, 8 deletions
diff --git a/examples/clustering/clustering_tree.py b/examples/clustering/clustering_tree.py index e9b0f74..47425c3 100644 --- a/examples/clustering/clustering_tree.py +++ b/examples/clustering/clustering_tree.py @@ -13,8 +13,8 @@ F\t-1.04\t-1.11\t0.87\t-0.14\t-0.80\t1.74\t0.48 G\t-1.57\t-1.17\t1.29\t0.23\t-0.20\t1.17\t0.26 H\t-1.53\t-1.25\t0.59\t-0.30\t0.32\t1.41\t0.77 """ -print "Example numerical matrix" -print matrix +print("Example numerical matrix") +print(matrix) # #Names col1 col2 col3 col4 col5 col6 col7 # A -1.23 -0.81 1.79 0.78 -0.42 -0.69 0.58 # B -1.76 -0.94 1.16 0.36 0.41 -0.35 1.12 @@ -30,7 +30,7 @@ print matrix # numerical matrix. We use the text_array argument to link the tree # with numerical matrix. t = ClusterTree("(((A,B),(C,(D,E))),(F,(G,H)));", text_array=matrix) -print "Example tree", t +print("Example tree", t) # /-A # /--------| # | \-B @@ -49,18 +49,18 @@ print "Example tree", t # Now we can ask the numerical profile associated to each node A = t.search_nodes(name='A')[0] -print "A associated profile:\n", A.profile +print("A associated profile:\n", A.profile) # [-1.23 -0.81 1.79 0.78 -0.42 -0.69 0.58] # # Or we can ask for the mean numerical profile of an internal # partition, which is computed as the average of all vectors under the # the given node. cluster = t.get_common_ancestor("E", "A") -print "Internal cluster mean profile:\n", cluster.profile +print("Internal cluster mean profile:\n", cluster.profile) #[-1.574 -0.686 1.048 -0.012 -0.118 0.614 0.728] # # We can also obtain the std. deviation vector of the mean profile -print "Internal cluster std deviation profile:\n", cluster.deviation +print("Internal cluster std deviation profile:\n", cluster.deviation) #[ 0.36565558 0.41301816 0.40676283 0.56211743 0.50704635 0.94949671 # 0.26753691] # If would need to re-link the tree to a different matrix or use @@ -96,7 +96,7 @@ H\t0\t0\t0\t0\t0\t0\t0 # obviated from association. t.children[0].link_to_arraytable(matrix_ones) t.children[1].link_to_arraytable(matrix_zeros) -print "A profile (using matrix with 1s", (t&"A").profile -print "H profile (using matrix with 0s)", (t&"H").profile +print("A profile (using matrix with 1s", (t&"A").profile) +print("H profile (using matrix with 0s)", (t&"H").profile) #A profile (using matrix with 1s [ 1. 1. 1. 1. 1. 1. 1.] #H profile (using matrix with 0s) [ 0. 0. 0. 0. 0. 0. 0.] |