diff options
Diffstat (limited to 'examples/evol/5_branchsite_cladetest.py')
| -rw-r--r-- | examples/evol/5_branchsite_cladetest.py | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/examples/evol/5_branchsite_cladetest.py b/examples/evol/5_branchsite_cladetest.py index faa2d04..bf3480c 100644 --- a/examples/evol/5_branchsite_cladetest.py +++ b/examples/evol/5_branchsite_cladetest.py @@ -26,12 +26,12 @@ tree.link_to_alignment ('data/S_example/alignment_S_measuring_evol.fasta') print (tree) print ('Tree and alignment loaded.') -input ('Tree will be mark in order to contrast Gorilla and Chimpanzee as foreground \nspecies.') +eval(input ('Tree will be mark in order to contrast Gorilla and Chimpanzee as foreground \nspecies.')) marks = ['1', 3, '7'] tree.mark_tree (marks, ['#1'] * 3) -print (tree.write ()) +print(tree.write ()) # display marked branches in orange for node in tree.traverse (): @@ -65,7 +65,7 @@ tree.run_model ('M1') print ('''p-value that, in marked clade, we have one class of site specifically evolving at a different rate:''') -print (tree.get_most_likely ('bsC.137', 'M1')) +print(tree.get_most_likely ('bsC.137', 'M1')) #print ('p-value representing significance that omega is different of 1:') #print (tree.get_most_likely ('bsD.137', 'M3')) |