diff options
Diffstat (limited to 'examples/phylogenies/species_aware_phylogenies.py')
| -rw-r--r-- | examples/phylogenies/species_aware_phylogenies.py | 16 |
1 files changed, 8 insertions, 8 deletions
diff --git a/examples/phylogenies/species_aware_phylogenies.py b/examples/phylogenies/species_aware_phylogenies.py index dc1312b..80baa8e 100644 --- a/examples/phylogenies/species_aware_phylogenies.py +++ b/examples/phylogenies/species_aware_phylogenies.py @@ -14,9 +14,9 @@ t = PhyloTree("(((Hsa_001,Ptr_001),(Cfa_001,Mms_001)),(Dme_001,Dme_002));") # \-Dme_002 # # Prints current leaf names and species codes -print "Deafult mode:" +print("Deafult mode:") for n in t.get_leaves(): - print "node:", n.name, "Species name:", n.species + print("node:", n.name, "Species name:", n.species) # node: Dme_001 Species name: Dme # node: Dme_002 Species name: Dme # node: Hsa_001 Species name: Hsa @@ -42,9 +42,9 @@ def get_species_name(node_name_string): return code2name[spcode] # Now, let's ask the tree to use our custom species naming function t.set_species_naming_function(get_species_name) -print "Custom mode:" +print("Custom mode:") for n in t.get_leaves(): - print "node:", n.name, "Species name:", n.species + print("node:", n.name, "Species name:", n.species) # node: Dme_001 Species name: Drosophila melanogaster # node: Dme_002 Species name: Drosophila melanogaster # node: Hsa_001 Species name: Homo sapiens @@ -63,9 +63,9 @@ mynewick = """ (Dme_001[&&NHX:species=Fly],Dme_002[&&NHX:species=Fly])); """ t = PhyloTree(mynewick, sp_naming_function=None) -print "Disabled mode (manual set):" +print("Disabled mode (manual set):") for n in t.get_leaves(): - print "node:", n.name, "Species name:", n.species + print("node:", n.name, "Species name:", n.species) # node: Dme_001 Species name: Fly # node: Dme_002 Species name: Fly # node: Hsa_001 Species name: Human @@ -76,8 +76,8 @@ for n in t.get_leaves(): # Of course, once this info is available you can query any internal # node for species covered. human_mouse_ancestor = t.get_common_ancestor("Hsa_001", "Mms_001") -print "These are the species under the common ancestor of Human & Mouse" -print '\n'.join( human_mouse_ancestor.get_species() ) +print("These are the species under the common ancestor of Human & Mouse") +print('\n'.join( human_mouse_ancestor.get_species() )) # Mouse # Chimp # Dog |