New upstream version 2.3.2

1 files changed, 22 insertions, 1 deletions

diff --git a/NEWS b/NEWS
index de7e1a6..03506ba 100644
--- a/NEWS
+++ b/NEWS
@@ -3,7 +3,7 @@ Bowtie 2 NEWS
 
 Bowtie 2 is now available for download from the project website,
 http://bowtie-bio.sf.net/bowtie2.  2.0.0-beta1 is the first version released to
-the public and 2.3.1 is the latest version.  Bowtie 2 is licensed under
+the public and 2.3.2 is the latest version.  Bowtie 2 is licensed under
 the GPLv3 license.  See `LICENSE' file for details.
 
 Reporting Issues
@@ -16,6 +16,27 @@ Please report any issues using the Sourceforge bug tracker:
 Version Release History
 =======================
 
+Version 2.3.2 - May 05, 2017
+    * Added support for interleaved paired-end FASTQ inputs
+      (--interleaved)
+    * Now reports MREVERSE SAM flag for unaligned end when only one
+      end of a pair aligns
+    * Fixed issue where first character of some read names was
+      omitted from SAM output when using tabbed input formats
+    * Added --sam-no-qname-trunc option, which causes entire read
+      name, including spaces, to be written to SAM output.  This
+      violates SAM specification, but can be useful in applications
+      that immediately postprocess the SAM.
+    * Fixed compilation error caused by pointer comparison issue
+      in aligner_result.cpp
+    * Removed termcap and readline dependencies introduced in v2.3.1
+    * Fixed compilation issues caused by gzbuffer function when
+      compiling with zlib v1.2.3.5 and earlier. Users compiling against
+      these libraries will use the zlib default buffer size of 8Kb
+      when decompressing read files.
+    * Fixed issue that would cause Bowtie 2 hang when aligning FASTA
+      inputs with more than one thread
+
 Version 2.3.1 - Mar 04, 2017
 Please note that as of this release Bowtie 2 now has dependencies on zlib and readline libraries.
 Make sure that all dependencies are met before attempting to build from source.