diff options
Diffstat (limited to 'aln_sink.cpp')
| -rw-r--r-- | aln_sink.cpp | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/aln_sink.cpp b/aln_sink.cpp index ed80580..793d245 100644 --- a/aln_sink.cpp +++ b/aln_sink.cpp @@ -2114,6 +2114,12 @@ void AlnSinkSam::appendMate( samc_.printPreservedOptFlags(o, rd); samc_.printComment(o, rd.name); o.append('\n'); + if(samc_.passthrough()) { + // Original read string + samc_.printOptFieldNewlineEscapedZ(o, rd.readOrigBuf); + o.append('\n'); + } + } #ifdef ALN_SINK_MAIN |