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Description: do not rebuild with default settings during test
The test suite builds the debug versions of the executables with default
flags, while is needs to be built with the flags in d/rules.
Author: Sascha Steinbiss <satta@debian.org>
--- bowtie2.orig/scripts/sim/run.sh
+++ bowtie2/scripts/sim/run.sh
@@ -21,17 +21,17 @@
CPUS=$1
shift
-
-MAKE=`which gmake || which make`
-$MAKE -j$CPUS \
- bowtie2-align-s \
- bowtie2-align-l \
- bowtie2-align-s-debug \
- bowtie2-align-l-debug \
- bowtie2-build-s \
- bowtie2-build-l \
- bowtie2-build-s-debug \
- bowtie2-build-l-debug && \
+#
+#MAKE=`which gmake || which make`
+#$MAKE -j$CPUS \
+# bowtie2-align-s \
+# bowtie2-align-l \
+# bowtie2-align-s-debug \
+# bowtie2-align-l-debug \
+# bowtie2-build-s \
+# bowtie2-build-l \
+# bowtie2-build-s-debug \
+# bowtie2-build-l-debug && \
perl scripts/sim/run.pl \
--bowtie2=./bowtie2 \
--bowtie2-build=./bowtie2-build \
--- bowtie2.orig/scripts/test/simple_tests.sh
+++ bowtie2/scripts/test/simple_tests.sh
@@ -24,19 +24,19 @@
export ASAN_OPTIONS=halt_on_error=1
export UBSAN_OPTIONS=halt_on_error=1
-MAKE=`which gmake || which make`
-$MAKE $* bowtie2-align-s \
- bowtie2-align-l \
- bowtie2-align-s-debug \
- bowtie2-align-l-debug \
- bowtie2-align-s-sanitized \
- bowtie2-align-l-sanitized \
- bowtie2-build-s \
- bowtie2-build-l \
- bowtie2-build-s-debug \
- bowtie2-build-l-debug \
- bowtie2-build-s-sanitized \
- bowtie2-build-l-sanitized && \
+#MAKE=`which gmake || which make`
+#$MAKE $* bowtie2-align-s \
+# bowtie2-align-l \
+# bowtie2-align-s-debug \
+# bowtie2-align-l-debug \
+# bowtie2-align-s-sanitized \
+# bowtie2-align-l-sanitized \
+# bowtie2-build-s \
+# bowtie2-build-l \
+# bowtie2-build-s-debug \
+# bowtie2-build-l-debug \
+# bowtie2-build-s-sanitized \
+# bowtie2-build-l-sanitized && \
perl scripts/test/simple_tests.pl \
--bowtie2=./bowtie2 \
--bowtie2-build=./bowtie2-build \
|
