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|
Description: Use path to interpreter instead of /usr/bin/env
Author: Alex Mestiashvili <amestia@rsh2.donotuse.de>
Forwarded: not-needed
--- bowtie2.orig/bowtie2
+++ bowtie2/bowtie2
@@ -1,4 +1,4 @@
-#!/usr/bin/env perl
+#!/usr/bin/perl
#
# Copyright 2011, Ben Langmead <langmea@cs.jhu.edu>
--- bowtie2.orig/bowtie2-build
+++ bowtie2/bowtie2-build
@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/python3
"""
Copyright 2014, Ben Langmead <langmea@cs.jhu.edu>
--- bowtie2.orig/bowtie2-inspect
+++ bowtie2/bowtie2-inspect
@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/python3
"""
Copyright 2014, Ben Langmead <langmea@cs.jhu.edu>
--- bowtie2.orig/example/reads/simulate.pl
+++ bowtie2/example/reads/simulate.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/env perl
+#!/usr/bin/perl
##
# Copyright 2011, Ben Langmead <langmea@cs.jhu.edu>
--- bowtie2.orig/scripts/sa.py
+++ bowtie2/scripts/sa.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/python3
"""
sa.py
--- bowtie2.orig/scripts/test/benchmark/benchmarks.py
+++ bowtie2/scripts/test/benchmark/benchmarks.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/python3
"""
A few items to deal with sets of benchmarks.
"""
--- bowtie2.orig/scripts/test/benchmark/run.py
+++ bowtie2/scripts/test/benchmark/run.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/python3
"""
Runs benchmark sets specified in JSON files.
--- bowtie2.orig/scripts/test/benchmark/samreader.py
+++ bowtie2/scripts/test/benchmark/samreader.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/python3
"""
A reader of SAM format.
--- bowtie2.orig/scripts/test/bt2face.py
+++ bowtie2/scripts/test/bt2face.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/python3
import os
import logging
--- bowtie2.orig/scripts/test/btdata.py
+++ bowtie2/scripts/test/btdata.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/python3
"""
Note: This would look so much better replaced by XML or at least JSON. But
is not worth to do it for now.
--- bowtie2.orig/scripts/test/dataface.py
+++ bowtie2/scripts/test/dataface.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/python3
import os
import logging
@@ -78,4 +78,4 @@
-
\ No newline at end of file
+
--- bowtie2.orig/scripts/test/large_idx.py
+++ bowtie2/scripts/test/large_idx.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/python3
import os
import gzip
--- bowtie2.orig/scripts/test/regressions.py
+++ bowtie2/scripts/test/regressions.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/python3
import os
import inspect
|
