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authorAndrej Shadura <andrewsh@debian.org>2019-03-09 22:30:41 +0000
committerAndrej Shadura <andrewsh@debian.org>2019-03-09 22:30:41 +0000
commit38212b3127e90751fb39cda34250bc11be62b76c (patch)
treedc1397346030e9695bd763dddc93b3be527cd643 /elki/src/main/java/de/lmu/ifi/dbs/elki/utilities/scaling/outlier/TopKOutlierScaling.java
parent337087b668d3a54f3afee3a9adb597a32e9f7e94 (diff)
Import Upstream version 0.7.0
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diff --git a/elki/src/main/java/de/lmu/ifi/dbs/elki/utilities/scaling/outlier/TopKOutlierScaling.java b/elki/src/main/java/de/lmu/ifi/dbs/elki/utilities/scaling/outlier/TopKOutlierScaling.java
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+++ b/elki/src/main/java/de/lmu/ifi/dbs/elki/utilities/scaling/outlier/TopKOutlierScaling.java
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+package de.lmu.ifi.dbs.elki.utilities.scaling.outlier;
+
+/*
+ This file is part of ELKI:
+ Environment for Developing KDD-Applications Supported by Index-Structures
+
+ Copyright (C) 2015
+ Ludwig-Maximilians-Universität München
+ Lehr- und Forschungseinheit für Datenbanksysteme
+ ELKI Development Team
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Affero General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU Affero General Public License for more details.
+
+ You should have received a copy of the GNU Affero General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+import de.lmu.ifi.dbs.elki.database.ids.DBIDIter;
+import de.lmu.ifi.dbs.elki.logging.LoggingUtil;
+import de.lmu.ifi.dbs.elki.result.outlier.OutlierResult;
+import de.lmu.ifi.dbs.elki.utilities.datastructures.QuickSelect;
+import de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike.ArrayLikeUtil;
+import de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike.NumberArrayAdapter;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.OptionID;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.CommonConstraints;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.Parameterization;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.Flag;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.IntParameter;
+
+/**
+ * Outlier scaling function that only keeps the top k outliers.
+ *
+ * @author Erich Schubert
+ */
+public class TopKOutlierScaling implements OutlierScalingFunction {
+ /**
+ * Parameter to specify the number of outliers to keep
+ * <p>
+ * Key: {@code -topk.k}
+ * </p>
+ */
+ public static final OptionID K_ID = new OptionID("topk.k", "Number of outliers to keep.");
+
+ /**
+ * Parameter to specify the lambda value
+ * <p>
+ * Key: {@code -topk.binary}
+ * </p>
+ */
+ public static final OptionID BINARY_ID = new OptionID("topk.binary", "Make the top k a binary scaling.");
+
+ /**
+ * Number of outliers to keep.
+ */
+ private int k = -1;
+
+ /**
+ * Do a binary decision
+ */
+ private boolean binary = false;
+
+ /**
+ * The value we cut off at.
+ */
+ private double cutoff;
+
+ /**
+ * The "ground" value
+ */
+ private double ground;
+
+ /**
+ * The maximum value
+ */
+ private double max;
+
+ /**
+ * Constructor.
+ *
+ * @param k
+ * @param binary
+ */
+ public TopKOutlierScaling(int k, boolean binary) {
+ super();
+ this.k = k;
+ this.binary = binary;
+ }
+
+ @Override
+ public void prepare(OutlierResult or) {
+ if(k <= 0) {
+ LoggingUtil.warning("No k configured for Top-k outlier scaling!");
+ }
+ DBIDIter order = or.getOrdering().order(or.getOrdering().getDBIDs()).iter();
+ for(int i = 0; i < k && order.valid(); i++, order.advance()) {
+ cutoff = or.getScores().doubleValue(order);
+ }
+ max = or.getOutlierMeta().getActualMaximum();
+ ground = or.getOutlierMeta().getTheoreticalBaseline();
+ if(Double.isInfinite(ground) || Double.isNaN(ground)) {
+ ground = or.getOutlierMeta().getTheoreticalMinimum();
+ }
+ if(Double.isInfinite(ground) || Double.isNaN(ground)) {
+ ground = or.getOutlierMeta().getActualMinimum();
+ }
+ if(Double.isInfinite(ground) || Double.isNaN(ground)) {
+ ground = Math.min(0.0, cutoff);
+ }
+ }
+
+ @Override
+ public <A> void prepare(A array, NumberArrayAdapter<?, A> adapter) {
+ if(k <= 0) {
+ LoggingUtil.warning("No k configured for Top-k outlier scaling!");
+ }
+ double[] scores = ArrayLikeUtil.toPrimitiveDoubleArray(array, adapter);
+ QuickSelect.quickSelect(scores, k);
+ cutoff = scores[k - 1];
+ max = Double.NEGATIVE_INFINITY;
+ for(double v : scores) {
+ max = Math.max(max, v);
+ }
+ ground = Math.min(0.0, cutoff);
+ }
+
+ @Override
+ public double getMax() {
+ if(binary) {
+ return 1.0;
+ }
+ return max;
+ }
+
+ @Override
+ public double getMin() {
+ if(binary) {
+ return 0.0;
+ }
+ return ground;
+ }
+
+ @Override
+ public double getScaled(double value) {
+ if(binary) {
+ if(value >= cutoff) {
+ return 1;
+ }
+ else {
+ return 0;
+ }
+ }
+ else {
+ if(value >= cutoff) {
+ return (value - ground) / (max - ground);
+ }
+ else {
+ return 0.0;
+ }
+ }
+ }
+
+ /**
+ * Parameterization class.
+ *
+ * @author Erich Schubert
+ *
+ * @apiviz.exclude
+ */
+ public static class Parameterizer extends AbstractParameterizer {
+ protected int k = 0;
+
+ protected boolean binary = false;
+
+ @Override
+ protected void makeOptions(Parameterization config) {
+ super.makeOptions(config);
+ IntParameter kP = new IntParameter(K_ID);
+ kP.addConstraint(CommonConstraints.GREATER_THAN_ONE_INT);
+ if(config.grab(kP)) {
+ k = kP.intValue();
+ }
+
+ Flag binaryF = new Flag(BINARY_ID);
+ if(config.grab(binaryF)) {
+ binary = binaryF.isTrue();
+ }
+ }
+
+ @Override
+ protected TopKOutlierScaling makeInstance() {
+ return new TopKOutlierScaling(k, binary);
+ }
+ }
+}