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authorAndrej Shadura <andrewsh@debian.org>2019-03-09 22:30:40 +0000
committerAndrej Shadura <andrewsh@debian.org>2019-03-09 22:30:40 +0000
commit337087b668d3a54f3afee3a9adb597a32e9f7e94 (patch)
treed860094269622472f8079d497ac7af02dbb4e038 /src/de/lmu/ifi/dbs/elki/algorithm/outlier/distance/DBOutlierScore.java
parent14a486343aef55f97f54082d6b542dedebf6f3ba (diff)
Import Upstream version 0.6.5~20141030
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+package de.lmu.ifi.dbs.elki.algorithm.outlier.distance;
+
+/*
+ This file is part of ELKI:
+ Environment for Developing KDD-Applications Supported by Index-Structures
+
+ Copyright (C) 2014
+ Ludwig-Maximilians-Universität München
+ Lehr- und Forschungseinheit für Datenbanksysteme
+ ELKI Development Team
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Affero General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU Affero General Public License for more details.
+
+ You should have received a copy of the GNU Affero General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+import de.lmu.ifi.dbs.elki.database.Database;
+import de.lmu.ifi.dbs.elki.database.datastore.DataStoreFactory;
+import de.lmu.ifi.dbs.elki.database.datastore.DataStoreUtil;
+import de.lmu.ifi.dbs.elki.database.datastore.DoubleDataStore;
+import de.lmu.ifi.dbs.elki.database.datastore.WritableDoubleDataStore;
+import de.lmu.ifi.dbs.elki.database.ids.DBIDIter;
+import de.lmu.ifi.dbs.elki.database.query.distance.DistanceQuery;
+import de.lmu.ifi.dbs.elki.database.query.range.RangeQuery;
+import de.lmu.ifi.dbs.elki.database.relation.Relation;
+import de.lmu.ifi.dbs.elki.distance.distancefunction.DistanceFunction;
+import de.lmu.ifi.dbs.elki.logging.Logging;
+import de.lmu.ifi.dbs.elki.utilities.Alias;
+import de.lmu.ifi.dbs.elki.utilities.documentation.Description;
+import de.lmu.ifi.dbs.elki.utilities.documentation.Reference;
+import de.lmu.ifi.dbs.elki.utilities.documentation.Title;
+
+/**
+ * Compute percentage of neighbors in the given neighborhood with size d.
+ *
+ * Generalization of the DB Outlier Detection by using the fraction as outlier
+ * score thus eliminating this parameter and turning the method into a ranking
+ * method instead of a labelling one.
+ *
+ * Reference:
+ * <p>
+ * E.M. Knorr, R. T. Ng:<br />
+ * Algorithms for Mining Distance-Based Outliers in Large Datasets,<br />
+ * In: Procs Int. Conf. on Very Large Databases (VLDB'98), New York, USA, 1998.
+ * </p>
+ *
+ * @author Lisa Reichert
+ *
+ * @apiviz.has RangeQuery
+ *
+ * @param <O> Database object type
+ */
+@Title("Distance based outlier score")
+@Description("Generalization of the original DB-Outlier approach to a ranking method, "//
+ + "by turning the fraction parameter into the output value.")
+@Reference(prefix = "Generalization of a method proposed in", //
+authors = "E.M. Knorr, R. T. Ng", //
+title = "Algorithms for Mining Distance-Based Outliers in Large Datasets", //
+booktitle = "Procs Int. Conf. on Very Large Databases (VLDB'98), New York, USA, 1998")
+@Alias({ "de.lmu.ifi.dbs.elki.algorithm.outlier.DBOutlierScore" })
+public class DBOutlierScore<O> extends AbstractDBOutlier<O> {
+ /**
+ * The logger for this class.
+ */
+ private static final Logging LOG = Logging.getLogger(DBOutlierScore.class);
+
+ /**
+ * Constructor with parameters.
+ *
+ * @param distanceFunction Distance function
+ * @param d distance radius parameter
+ */
+ public DBOutlierScore(DistanceFunction<O> distanceFunction, double d) {
+ super(distanceFunction, d);
+ }
+
+ @Override
+ protected DoubleDataStore computeOutlierScores(Database database, Relation<O> relation, double d) {
+ DistanceQuery<O> distFunc = database.getDistanceQuery(relation, getDistanceFunction());
+ RangeQuery<O> rangeQuery = database.getRangeQuery(distFunc);
+ final double size = distFunc.getRelation().size();
+
+ WritableDoubleDataStore scores = DataStoreUtil.makeDoubleStorage(distFunc.getRelation().getDBIDs(), DataStoreFactory.HINT_STATIC);
+ // TODO: use bulk when implemented.
+ for(DBIDIter iditer = distFunc.getRelation().iterDBIDs(); iditer.valid(); iditer.advance()) {
+ // compute percentage of neighbors in the given neighborhood with size d
+ double n = (rangeQuery.getRangeForDBID(iditer, d).size()) / size;
+ scores.putDouble(iditer, 1.0 - n);
+ }
+ return scores;
+ }
+
+ @Override
+ protected Logging getLogger() {
+ return LOG;
+ }
+
+ /**
+ * Parameterization class.
+ *
+ * @author Erich Schubert
+ *
+ * @apiviz.exclude
+ */
+ public static class Parameterizer<O> extends AbstractDBOutlier.Parameterizer<O> {
+ @Override
+ protected DBOutlierScore<O> makeInstance() {
+ return new DBOutlierScore<>(distanceFunction, d);
+ }
+ }
+} \ No newline at end of file