diff options
Diffstat (limited to 'addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers')
70 files changed, 569 insertions, 3 deletions
diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/AbstractVisFactory.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/AbstractVisFactory.java index 841ea83f..d8a9525d 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/AbstractVisFactory.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/AbstractVisFactory.java @@ -33,6 +33,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.thumbs.ThumbnailVisualizati * Abstract superclass for Visualizers (aka: Visualization Factories). * * @author Remigius Wojdanowski + * @since 0.4.0 * * @apiviz.uses ThumbnailVisualization oneway - - «create» * @apiviz.excludeSubtypes diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/AbstractVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/AbstractVisualization.java index 49e749c0..91cc9323 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/AbstractVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/AbstractVisualization.java @@ -42,6 +42,7 @@ import de.lmu.ifi.dbs.elki.visualization.style.StylingPolicy; * Abstract base class for visualizations. * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.excludeSubtypes */ @@ -197,7 +198,7 @@ public abstract class AbstractVisualization implements Visualization, ResultList @Override public void visualizationChanged(VisualizationItem item) { - if(task.getResult() == item) { + if(task == item || task.getResult() == item) { svgp.requestRedraw(this.task, this); return; } diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/StaticVisualizationInstance.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/StaticVisualizationInstance.java index b89720fe..e3b2432b 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/StaticVisualizationInstance.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/StaticVisualizationInstance.java @@ -32,6 +32,7 @@ import de.lmu.ifi.dbs.elki.visualization.gui.VisualizationPlot; * Static visualization * * @author Erich Schubert + * @since 0.4.0 */ public class StaticVisualizationInstance extends AbstractVisualization { /** diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/VisFactory.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/VisFactory.java index bf30fe8f..aca34382 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/VisFactory.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/VisFactory.java @@ -34,6 +34,7 @@ import de.lmu.ifi.dbs.elki.visualization.projections.Projection; * parameters (default constructor) to be used for parameterization. * * @author Remigius Wojdanowski + * @since 0.3 * * @apiviz.landmark * @apiviz.stereotype factory diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/Visualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/Visualization.java index ee355e4a..e7ea486c 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/Visualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/Visualization.java @@ -29,6 +29,7 @@ import org.w3c.dom.Element; * Base class for a materialized Visualization. * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.landmark * @apiviz.has Element oneway diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/actions/ClusterStyleAction.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/actions/ClusterStyleAction.java index 7923509e..a86cc3dd 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/actions/ClusterStyleAction.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/actions/ClusterStyleAction.java @@ -40,6 +40,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Actions to use clusterings for styling. * * @author Erich Schubert + * @since 0.7.0 */ public class ClusterStyleAction extends AbstractVisFactory { /** diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/histogram/AbstractHistogramVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/histogram/AbstractHistogramVisualization.java index 34c648ba..4f1b8b50 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/histogram/AbstractHistogramVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/histogram/AbstractHistogramVisualization.java @@ -34,6 +34,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.AbstractVisualization; * One-dimensional projected visualization. * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.landmark * @apiviz.has Projection1D diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/histogram/ColoredHistogramVisualizer.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/histogram/ColoredHistogramVisualizer.java index 80bbfeeb..27528059 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/histogram/ColoredHistogramVisualizer.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/histogram/ColoredHistogramVisualizer.java @@ -93,6 +93,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * * @author Remigius Wojdanowski * @author Erich Schubert + * @since 0.3 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/AbstractOPTICSVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/AbstractOPTICSVisualization.java index 401e05e6..21f91a99 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/AbstractOPTICSVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/AbstractOPTICSVisualization.java @@ -38,6 +38,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.AbstractVisualization; * Abstract base class for OPTICS visualizer * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.uses OPTICSProjection */ diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSClusterVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSClusterVisualization.java index e1cd5c66..10eb8b79 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSClusterVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSClusterVisualization.java @@ -53,6 +53,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Plot. * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSPlotCutVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSPlotCutVisualization.java index 65e00430..a4f95e7d 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSPlotCutVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSPlotCutVisualization.java @@ -55,6 +55,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * * @author Heidi Kolb * @author Erich Schubert + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSPlotSelectionVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSPlotSelectionVisualization.java index 7abc5609..f723cfef 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSPlotSelectionVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSPlotSelectionVisualization.java @@ -54,6 +54,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Handle the marker in an OPTICS plot. * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSPlotVisualizer.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSPlotVisualizer.java index 65d8ecf3..4110e416 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSPlotVisualizer.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSPlotVisualizer.java @@ -47,6 +47,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Visualize an OPTICS result by constructing an OPTICS plot for it. * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSSteepAreaVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSSteepAreaVisualization.java index ef8f6198..88ee710d 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSSteepAreaVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/optics/OPTICSSteepAreaVisualization.java @@ -51,6 +51,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Visualize the steep areas found in an OPTICS plot * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/pairsegments/CircleSegmentsVisualizer.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/pairsegments/CircleSegmentsVisualizer.java index 72e9ccef..4a33c504 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/pairsegments/CircleSegmentsVisualizer.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/pairsegments/CircleSegmentsVisualizer.java @@ -84,6 +84,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * * @author Sascha Goldhofer * @author Erich Schubert + * @since 0.5.0 * * @apiviz.landmark * diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/pairsegments/SegmentsStylingPolicy.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/pairsegments/SegmentsStylingPolicy.java index 7e38d951..3a95f33c 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/pairsegments/SegmentsStylingPolicy.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/pairsegments/SegmentsStylingPolicy.java @@ -47,6 +47,7 @@ import de.lmu.ifi.dbs.elki.visualization.svg.SVGUtil; * * @author Sascha Goldhofer * @author Erich Schubert + * @since 0.5.0 */ public class SegmentsStylingPolicy implements ClassStylingPolicy { /** diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/AbstractParallelVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/AbstractParallelVisualization.java index 3ac02de2..b5398ccb 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/AbstractParallelVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/AbstractParallelVisualization.java @@ -42,6 +42,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.AbstractVisualization; * * @author Robert Rödler * @author Erich Schubert + * @since 0.5.0 * * @param <NV> Data type in relation */ diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/AxisReorderVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/AxisReorderVisualization.java index ce24ad2a..e7ac7193 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/AxisReorderVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/AxisReorderVisualization.java @@ -50,6 +50,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * * @author Robert Rödler * @author Erich Schubert + * @since 0.5.5 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/AxisVisibilityVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/AxisVisibilityVisualization.java index 1e12f87c..3b57dd48 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/AxisVisibilityVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/AxisVisibilityVisualization.java @@ -50,6 +50,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * * @author Robert Rödler * @author Erich Schubert + * @since 0.5.5 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/BoundingBoxVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/BoundingBoxVisualization.java index 6b3671d1..3b0fb572 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/BoundingBoxVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/BoundingBoxVisualization.java @@ -57,6 +57,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Draw spatial objects (except vectors!) * * @author Erich Schubert + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/LineVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/LineVisualization.java index a13bdb74..3bee4b2a 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/LineVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/LineVisualization.java @@ -57,6 +57,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Generates data lines. * * @author Robert Rödler + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/ParallelAxisVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/ParallelAxisVisualization.java index 4f35faf6..70962a08 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/ParallelAxisVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/ParallelAxisVisualization.java @@ -52,6 +52,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Generates a SVG-Element containing axes, including labeling. * * @author Robert Rödler + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/cluster/ClusterOutlineVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/cluster/ClusterOutlineVisualization.java index 1a660bf9..04777614 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/cluster/ClusterOutlineVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/cluster/ClusterOutlineVisualization.java @@ -67,6 +67,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.cluster.Cluster * Generates a SVG-Element that visualizes the area covered by a cluster. * * @author Robert Rödler + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/cluster/ClusterParallelMeanVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/cluster/ClusterParallelMeanVisualization.java index 6e0dc167..bb842166 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/cluster/ClusterParallelMeanVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/cluster/ClusterParallelMeanVisualization.java @@ -60,6 +60,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.parallel.AbstractParallelVi * Generates a SVG-Element that visualizes cluster means. * * @author Robert Rödler + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/index/RTreeParallelVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/index/RTreeParallelVisualization.java index 338729f4..d8a7a476 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/index/RTreeParallelVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/index/RTreeParallelVisualization.java @@ -58,6 +58,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.index.TreeMBRVi * Visualize the of an R-Tree based index. * * @author Robert Rödler + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionAxisRangeVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionAxisRangeVisualization.java index 5f56e774..f9a3ada3 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionAxisRangeVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionAxisRangeVisualization.java @@ -51,6 +51,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.parallel.AbstractParallelVi * Visualizer for generating an SVG-Element representing the selected range. * * @author Robert Rödler + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionLineVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionLineVisualization.java index b4107147..4f80bcae 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionLineVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionLineVisualization.java @@ -54,6 +54,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.parallel.AbstractParallelVi * Visualizer for generating SVG-Elements representing the selected objects * * @author Robert Rödler + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionToolAxisRangeVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionToolAxisRangeVisualization.java index 3dd96007..cc6e1e2f 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionToolAxisRangeVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionToolAxisRangeVisualization.java @@ -58,6 +58,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.parallel.AbstractParallelVi * Tool-Visualization for the tool to select axis ranges * * @author Robert Rödler + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionToolLineVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionToolLineVisualization.java index aa22a267..1a481548 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionToolLineVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/parallel/selection/SelectionToolLineVisualization.java @@ -60,6 +60,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.parallel.AbstractParallelVi * Tool-Visualization for the tool to select objects * * @author Robert Rödler + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/AbstractScatterplotVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/AbstractScatterplotVisualization.java index 13225426..08ca1eac 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/AbstractScatterplotVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/AbstractScatterplotVisualization.java @@ -45,6 +45,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.AbstractVisualization; * Default class to handle 2D projected visualizations. * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.landmark * @apiviz.has Projection2D diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/AbstractTooltipVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/AbstractTooltipVisualization.java index 313b2dff..ff4f14e6 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/AbstractTooltipVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/AbstractTooltipVisualization.java @@ -45,6 +45,7 @@ import de.lmu.ifi.dbs.elki.visualization.svg.SVGUtil; * General base class for a tooltip visualizer. * * @author Erich Schubert + * @since 0.4.0 */ // TODO: can we improve performance by not adding as many hovers? public abstract class AbstractTooltipVisualization extends AbstractScatterplotVisualization implements DataStoreListener { diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/AxisVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/AxisVisualization.java index 9fa1bd96..64fcb381 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/AxisVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/AxisVisualization.java @@ -47,6 +47,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * * @author Remigius Wojdanowski * @author Erich Schubert + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/MarkerVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/MarkerVisualization.java index 6508d9ce..07e8cd13 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/MarkerVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/MarkerVisualization.java @@ -52,6 +52,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * kind of result we have a style source for. * * @author Erich Schubert + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/PolygonVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/PolygonVisualization.java index 796d8f5f..032a319a 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/PolygonVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/PolygonVisualization.java @@ -53,6 +53,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Renders PolygonsObject in the data set. * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/ReferencePointsVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/ReferencePointsVisualization.java index 1f0246e0..b75113cc 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/ReferencePointsVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/ReferencePointsVisualization.java @@ -50,6 +50,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * * @author Remigius Wojdanowski * @author Erich Schubert + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/TooltipScoreVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/TooltipScoreVisualization.java index 585b5405..656bac0b 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/TooltipScoreVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/TooltipScoreVisualization.java @@ -61,6 +61,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * * @author Remigius Wojdanowski * @author Erich Schubert + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/TooltipStringVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/TooltipStringVisualization.java index d367306d..4f694518 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/TooltipStringVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/TooltipStringVisualization.java @@ -52,6 +52,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * * @author Remigius Wojdanowski * @author Erich Schubert + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterHullVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterHullVisualization.java index fb4ed69c..b1f0a78d 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterHullVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterHullVisualization.java @@ -77,6 +77,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * * @author Robert Rödler * @author Erich Schubert + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterMeanVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterMeanVisualization.java index bd597111..768d0ab6 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterMeanVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterMeanVisualization.java @@ -58,6 +58,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * Visualize the mean of a KMeans-Clustering * * @author Heidi Kolb + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterOrderVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterOrderVisualization.java index 9a029c79..a11bc1c3 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterOrderVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterOrderVisualization.java @@ -50,6 +50,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * order represents. * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterStarVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterStarVisualization.java index c0bedc4a..c848f6c1 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterStarVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/ClusterStarVisualization.java @@ -58,6 +58,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * Visualize the mean of a KMeans-Clustering using stars. * * @author Heidi Kolb + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/EMClusterVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/EMClusterVisualization.java index 04a2d241..deccbfb9 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/EMClusterVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/EMClusterVisualization.java @@ -70,6 +70,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * tries to approximate the cluster extends. * * @author Robert Rödler + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/VoronoiVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/VoronoiVisualization.java index f1d9051b..cd13dde9 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/VoronoiVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/cluster/VoronoiVisualization.java @@ -45,6 +45,7 @@ import de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer; import de.lmu.ifi.dbs.elki.utilities.optionhandling.OptionID; import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.Parameterization; import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.EnumParameter; +import de.lmu.ifi.dbs.elki.visualization.VisualizationMenuAction; import de.lmu.ifi.dbs.elki.visualization.VisualizationTask; import de.lmu.ifi.dbs.elki.visualization.VisualizationTree; import de.lmu.ifi.dbs.elki.visualization.VisualizerContext; @@ -68,6 +69,9 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * * See also: {@link de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.KMeansLloyd * KMeans clustering} + * + * @author Erich Schubert + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» @@ -134,6 +138,62 @@ public class VoronoiVisualization extends AbstractVisFactory { task.level = VisualizationTask.LEVEL_DATA + 3; task.addUpdateFlags(VisualizationTask.ON_STYLEPOLICY); context.addVis(p, task); + context.addVis(p, new SwitchModeAction(task, context)); + } + } + + /** + * Menu item to change visualization styles. + * + * @author Erich Schubert + */ + public class SwitchModeAction implements VisualizationMenuAction { + /** + * Task we represent. + */ + private VisualizationTask task; + + /** + * Visualizer context. + */ + private VisualizerContext context; + + /** + * Constructor. + * + * @param task Task + * @param context Visualizer context + */ + public SwitchModeAction(VisualizationTask task, VisualizerContext context) { + super(); + this.task = task; + this.context = context; + } + + @Override + public String getMenuName() { + return "Switch Voronoi Mode"; + } + + @Override + public void activate() { + switch(mode){ + case VORONOI: + mode = Mode.DELAUNAY; + break; + case DELAUNAY: + mode = Mode.V_AND_D; + break; + case V_AND_D: + mode = Mode.VORONOI; + break; + } + context.visChanged(task); + } + + @Override + public boolean enabled() { + return true; } } diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/density/DensityEstimationOverlay.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/density/DensityEstimationOverlay.java index 95239509..31049ebf 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/density/DensityEstimationOverlay.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/density/DensityEstimationOverlay.java @@ -55,6 +55,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * <em>in the projection, not the actual data!</em> * * @author Erich Schubert + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/index/TreeMBRVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/index/TreeMBRVisualization.java index 67fd97a7..8296c697 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/index/TreeMBRVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/index/TreeMBRVisualization.java @@ -59,6 +59,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * Visualize the bounding rectangles of an R-Tree based index. * * @author Erich Schubert + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/index/TreeSphereVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/index/TreeSphereVisualization.java index f4eb6a95..1cd93017 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/index/TreeSphereVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/index/TreeSphereVisualization.java @@ -65,6 +65,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * Visualize the bounding sphere of a metric index. * * @author Erich Schubert + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/outlier/BubbleVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/outlier/BubbleVisualization.java index f99b52f4..68e4e281 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/outlier/BubbleVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/outlier/BubbleVisualization.java @@ -67,6 +67,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * * @author Remigius Wojdanowski * @author Erich Schubert + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/outlier/COPVectorVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/outlier/COPVectorVisualization.java index b2abeb9f..762b2e0a 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/outlier/COPVectorVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/outlier/COPVectorVisualization.java @@ -56,6 +56,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * Visualize error vectors as produced by COP. * * @author Erich Schubert + * @since 0.5.5 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/DistanceFunctionVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/DistanceFunctionVisualization.java index 4751605f..7d73400a 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/DistanceFunctionVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/DistanceFunctionVisualization.java @@ -72,6 +72,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * * @author Erich Schubert * @author Robert Rödler + * @since 0.5.5 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/MoveObjectsToolVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/MoveObjectsToolVisualization.java index c594d500..b8082301 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/MoveObjectsToolVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/MoveObjectsToolVisualization.java @@ -58,6 +58,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * * @author Heidi Kolb * @author Erich Schubert + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionConvexHullVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionConvexHullVisualization.java index add2ab8d..5ad2a432 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionConvexHullVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionConvexHullVisualization.java @@ -57,6 +57,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * selected points * * @author Robert Rödler + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionCubeVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionCubeVisualization.java index 7ad7b32b..d060bdce 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionCubeVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionCubeVisualization.java @@ -57,6 +57,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * representing the selected range for each dimension * * @author Heidi Kolb + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionDotVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionDotVisualization.java index c9aed72f..478fbd5b 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionDotVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionDotVisualization.java @@ -51,6 +51,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * representing the selected Database's objects. * * @author Heidi Kolb + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionToolCubeVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionToolCubeVisualization.java index 0cc56e08..cd383865 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionToolCubeVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionToolCubeVisualization.java @@ -62,6 +62,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * TODO: support non-point spatial data * * @author Heidi Kolb + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionToolDotVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionToolDotVisualization.java index 04a092b5..3b0831ff 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionToolDotVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/selection/SelectionToolDotVisualization.java @@ -56,6 +56,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * Tool-Visualization for the tool to select objects * * @author Heidi Kolb + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses Instance - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/uncertain/UncertainBoundingBoxVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/uncertain/UncertainBoundingBoxVisualization.java index 4e4cca3a..f7d27fc6 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/uncertain/UncertainBoundingBoxVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/uncertain/UncertainBoundingBoxVisualization.java @@ -58,6 +58,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * But it serves the purpose. * * @author Erich Schubert + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/uncertain/UncertainInstancesVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/uncertain/UncertainInstancesVisualization.java index c66d88e3..da2df885 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/uncertain/UncertainInstancesVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/uncertain/UncertainInstancesVisualization.java @@ -56,6 +56,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * But it serves the purpose. * * @author Erich Schubert + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/uncertain/UncertainSamplesVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/uncertain/UncertainSamplesVisualization.java index a186d881..80339e0a 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/uncertain/UncertainSamplesVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/scatterplot/uncertain/UncertainSamplesVisualization.java @@ -62,6 +62,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.AbstractScatter * But it serves the purpose. * * @author Erich Schubert + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/thumbs/ThumbnailThread.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/thumbs/ThumbnailThread.java index e43656cf..c594e3a3 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/thumbs/ThumbnailThread.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/thumbs/ThumbnailThread.java @@ -30,6 +30,7 @@ import java.util.concurrent.ConcurrentLinkedQueue; * Thread to render thumbnails in the background. * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.uses Listener oneway - - signals */ diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/thumbs/ThumbnailVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/thumbs/ThumbnailVisualization.java index 1c0dd760..e05481d2 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/thumbs/ThumbnailVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/thumbs/ThumbnailVisualization.java @@ -51,6 +51,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Thumbnail visualization. * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.uses ThumbnailThread */ @@ -200,7 +201,7 @@ public class ThumbnailVisualization extends AbstractVisualization implements Thu @Override public void resultChanged(Result current) { // Default is to redraw when the result we are attached to changed. - if(task.getResult() == current) { + if(task == current || task.getResult() == current) { refreshThumbnail(); return; } @@ -216,7 +217,7 @@ public class ThumbnailVisualization extends AbstractVisualization implements Thu @Override public void visualizationChanged(VisualizationItem item) { - if(task.updateOnAny(VisualizationTask.ON_STYLEPOLICY) && item instanceof StylingPolicy) { + if(task == item || (task.updateOnAny(VisualizationTask.ON_STYLEPOLICY) && item instanceof StylingPolicy)) { refreshThumbnail(); return; } diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/DendrogramVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/DendrogramVisualization.java new file mode 100644 index 00000000..1536f1a5 --- /dev/null +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/DendrogramVisualization.java @@ -0,0 +1,438 @@ +package de.lmu.ifi.dbs.elki.visualization.visualizers.visunproj; +/* + This file is part of ELKI: + Environment for Developing KDD-Applications Supported by Index-Structures + + Copyright (C) 2015 + Ludwig-Maximilians-Universität München + Lehr- und Forschungseinheit für Datenbanksysteme + ELKI Development Team + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU Affero General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU Affero General Public License for more details. + + You should have received a copy of the GNU Affero General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + */ + +import org.apache.batik.util.SVGConstants; +import org.w3c.dom.Element; + +import de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical.PointerHierarchyRepresentationResult; +import de.lmu.ifi.dbs.elki.database.datastore.DBIDDataStore; +import de.lmu.ifi.dbs.elki.database.datastore.DataStoreUtil; +import de.lmu.ifi.dbs.elki.database.datastore.DoubleDataStore; +import de.lmu.ifi.dbs.elki.database.datastore.IntegerDataStore; +import de.lmu.ifi.dbs.elki.database.ids.ArrayModifiableDBIDs; +import de.lmu.ifi.dbs.elki.database.ids.DBIDIter; +import de.lmu.ifi.dbs.elki.database.ids.DBIDUtil; +import de.lmu.ifi.dbs.elki.database.ids.DBIDVar; +import de.lmu.ifi.dbs.elki.database.ids.DBIDs; +import de.lmu.ifi.dbs.elki.logging.LoggingUtil; +import de.lmu.ifi.dbs.elki.math.scales.LinearScale; +import de.lmu.ifi.dbs.elki.utilities.datastructures.hierarchy.Hierarchy; +import de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer; +import de.lmu.ifi.dbs.elki.utilities.optionhandling.OptionID; +import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.Parameterization; +import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.EnumParameter; +import de.lmu.ifi.dbs.elki.visualization.VisualizationMenuAction; +import de.lmu.ifi.dbs.elki.visualization.VisualizationTask; +import de.lmu.ifi.dbs.elki.visualization.VisualizationTree; +import de.lmu.ifi.dbs.elki.visualization.VisualizerContext; +import de.lmu.ifi.dbs.elki.visualization.colors.ColorLibrary; +import de.lmu.ifi.dbs.elki.visualization.css.CSSClass; +import de.lmu.ifi.dbs.elki.visualization.css.CSSClassManager.CSSNamingConflict; +import de.lmu.ifi.dbs.elki.visualization.gui.VisualizationPlot; +import de.lmu.ifi.dbs.elki.visualization.projections.Projection; +import de.lmu.ifi.dbs.elki.visualization.style.ClassStylingPolicy; +import de.lmu.ifi.dbs.elki.visualization.style.StyleLibrary; +import de.lmu.ifi.dbs.elki.visualization.style.StylingPolicy; +import de.lmu.ifi.dbs.elki.visualization.svg.SVGPath; +import de.lmu.ifi.dbs.elki.visualization.svg.SVGPlot; +import de.lmu.ifi.dbs.elki.visualization.svg.SVGSimpleLinearAxis; +import de.lmu.ifi.dbs.elki.visualization.svg.SVGUtil; +import de.lmu.ifi.dbs.elki.visualization.visualizers.AbstractVisFactory; +import de.lmu.ifi.dbs.elki.visualization.visualizers.AbstractVisualization; +import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; + +/** + * Dendrogram visualizer. + * + * @author Erich Schubert + * @since 0.7.1 + * + * @apiviz.stereotype factory + * @apiviz.uses Instance oneway - - «create» + */ +public class DendrogramVisualization extends AbstractVisFactory { + /** + * Visualizer name. + */ + private static final String NAME = "Dendrogram"; + + /** + * Styles for dendrograms. + * + * @author Erich Schubert + * + * @apiviz.exclude + */ + public static enum Style { + RECTANGULAR, // + TRIANGULAR, // + } + + /** + * Drawing style. + */ + private Style style = Style.RECTANGULAR; + + /** + * Constructor. + * + * @param style Visualization style. + */ + public DendrogramVisualization(Style style) { + super(); + this.style = style; + } + + @Override + public void processNewResult(VisualizerContext context, Object start) { + // Ensure there is a clustering result: + Hierarchy.Iter<PointerHierarchyRepresentationResult> it = VisualizationTree.filterResults(context, start, PointerHierarchyRepresentationResult.class); + for(; it.valid(); it.advance()) { + PointerHierarchyRepresentationResult pi = it.get(); + final VisualizationTask task = new VisualizationTask(NAME, context, pi, null, this); + task.level = VisualizationTask.LEVEL_STATIC; + task.addUpdateFlags(VisualizationTask.ON_STYLEPOLICY); + task.reqwidth = 1.; + task.reqheight = 1.; + context.addVis(context.getStylingPolicy(), task); + context.addVis(pi, new SwitchStyleAction(task, context)); + } + } + + @Override + public Visualization makeVisualization(VisualizationTask task, VisualizationPlot plot, double width, double height, Projection proj) { + return new Instance(task, plot, width, height); + } + + /** + * Menu item to change visualization styles. + * + * @author Erich Schubert + */ + public class SwitchStyleAction implements VisualizationMenuAction { + /** + * Task we represent. + */ + private VisualizationTask task; + + /** + * Visualizer context. + */ + private VisualizerContext context; + + /** + * Constructor. + * + * @param task Task + * @param context Visualizer context + */ + public SwitchStyleAction(VisualizationTask task, VisualizerContext context) { + super(); + this.task = task; + this.context = context; + } + + @Override + public String getMenuName() { + return "Switch Dendrogram Style"; + } + + @Override + public void activate() { + switch(style){ + case RECTANGULAR: + style = Style.TRIANGULAR; + break; + case TRIANGULAR: + style = Style.RECTANGULAR; + break; + } + context.visChanged(task); + } + + @Override + public boolean enabled() { + return true; + } + } + + /** + * Visualization instance. + * + * @author Erich Schubert + */ + public class Instance extends AbstractVisualization { + /** + * CSS class for key captions. + */ + private static final String KEY_CAPTION = "key-caption"; + + /** + * CSS class for hierarchy plot lines + */ + private static final String KEY_HIERLINE = "key-hierarchy"; + + /** + * Constructor. + * + * @param task Visualization task + * @param plot Plot to draw to + * @param width Embedding width + * @param height Embedding height + */ + public Instance(VisualizationTask task, VisualizationPlot plot, double width, double height) { + super(task, plot, width, height); + addListeners(); + } + + @Override + public void fullRedraw() { + layer = svgp.svgElement(SVGConstants.SVG_G_TAG); + + StyleLibrary style = context.getStyleLibrary(); + StylingPolicy spol = context.getStylingPolicy(); + + PointerHierarchyRepresentationResult p = task.getResult(); + + DBIDs ids = p.getDBIDs(); + DBIDDataStore par = p.getParentStore(); + DoubleDataStore pdi = p.getParentDistanceStore(); + IntegerDataStore pos = p.getPositions(); + DBIDVar pa = DBIDUtil.newVar(); + + final int size = ids.size(); + double linew = StyleLibrary.SCALE * .1 / Math.log1p(size); + double width = StyleLibrary.SCALE, + height = width / getWidth() * getHeight(); + double xscale = width / size, xoff = xscale * .5; + double maxh = Double.MIN_NORMAL; + for(DBIDIter it = ids.iter(); it.valid(); it.advance()) { + if(DBIDUtil.equal(it, par.assignVar(it, pa))) { + continue; // Root + } + double v = pdi.doubleValue(it); + if(v == Double.POSITIVE_INFINITY) { + continue; + } + maxh = v > maxh ? v : maxh; + } + LinearScale yscale = new LinearScale(0, maxh); + // add axes + try { + SVGSimpleLinearAxis.drawAxis(svgp, layer, yscale, 0, height, 0, 0, SVGSimpleLinearAxis.LabelStyle.LEFTHAND, style); + } + catch(CSSNamingConflict e) { + LoggingUtil.exception(e); + } + + // Initial positions: + double[] xy = new double[size << 1]; + for(DBIDIter it = ids.iter(); it.valid(); it.advance()) { + final int off = pos.intValue(it); + xy[off] = off * xscale + xoff; + xy[off + size] = height; + } + // Draw ascending by distance + ArrayModifiableDBIDs order = DBIDUtil.newArray(ids); + order.sort(new DataStoreUtil.AscendingByDoubleDataStoreAndId(pdi)); + + if(spol instanceof ClassStylingPolicy) { + ClassStylingPolicy cspol = (ClassStylingPolicy) spol; + setupCSS(svgp, cspol, linew); + int mins = cspol.getMinStyle() - 1, maxs = cspol.getMaxStyle(); + SVGPath[] paths = new SVGPath[maxs - mins + 1]; + for(int i = 0; i < paths.length; i++) { + paths[i] = new SVGPath(); + } + for(DBIDIter it = order.iter(); it.valid(); it.advance()) { + par.assignVar(it, pa); // Get parent. + double h = pdi.doubleValue(it); + final int o1 = pos.intValue(it); + final int p1 = cspol.getStyleForDBID(it); + double x1 = xy[o1], y1 = xy[o1 + size]; + if(DBIDUtil.equal(it, pa)) { + paths[p1 - mins + 1].moveTo(x1, y1).verticalLineTo(height * (1 - yscale.getScaled(h))); + continue; // Root + } + final int o2 = pos.intValue(pa); + final int p2 = cspol.getStyleForDBID(pa); + double x2 = xy[o2], y2 = xy[o2 + size]; + double x3 = (x1 + x2) * .5, y3 = height * (1 - yscale.getScaled(h)); + switch(DendrogramVisualization.this.style){ + case RECTANGULAR: + if(p1 == p2) { + paths[p1 - mins + 1].moveTo(x1, y1).verticalLineTo(y3).horizontalLineTo(x2).verticalLineTo(y2); + } + else { + paths[y1 == height ? p1 - mins + 1 : 0].moveTo(x1, y1).verticalLineTo(y3); + paths[y2 == height ? p2 - mins + 1 : 0].moveTo(x2, y2).verticalLineTo(y3); + paths[0].moveTo(x1, y3).horizontalLineTo(x2); + } + break; + case TRIANGULAR: + if(p1 == p2) { + paths[p1 - mins + 1].moveTo(x1, y1).drawTo(x3, y3).drawTo(x2, y2); + } + else { + paths[y1 == height ? p1 - mins + 1 : 0].moveTo(x1, y1).drawTo(x3, y3); + paths[y2 == height ? p2 - mins + 1 : 0].moveTo(x2, y2).drawTo(x3, y3); + } + break; + } + xy[o2] = x3; + xy[o2 + size] = y3; + } + for(int i = 0; i < paths.length; i++) { + SVGPath path = paths[i]; + if(!path.isStarted()) { + continue; + } + Element elem = path.makeElement(svgp); + SVGUtil.setCSSClass(elem, (i > 0 ? KEY_HIERLINE + "_" + (i + mins - 1) : KEY_HIERLINE)); + layer.appendChild(elem); + } + } + else { + setupCSS(svgp, linew); + SVGPath dendrogram = new SVGPath(); + + for(DBIDIter it = order.iter(); it.valid(); it.advance()) { + double h = pdi.doubleValue(it); + final int o1 = pos.intValue(it); + double x1 = xy[o1], y1 = xy[o1 + size]; + if(DBIDUtil.equal(it, par.assignVar(it, pa))) { + dendrogram.moveTo(x1, y1).verticalLineTo(height * (1 - yscale.getScaled(h))); + continue; // Root + } + final int o2 = pos.intValue(pa); + double x2 = xy[o2], y2 = xy[o2 + size]; + double x3 = (x1 + x2) * .5, y3 = height * (1 - yscale.getScaled(h)); + switch(DendrogramVisualization.this.style){ + case RECTANGULAR: + dendrogram.moveTo(x1, y1).verticalLineTo(y3).horizontalLineTo(x2).verticalLineTo(y2); + break; + case TRIANGULAR: + dendrogram.moveTo(x1, y1).drawTo(x3, y3).drawTo(x2, y2); + break; + } + xy[o2] = x3; + xy[o2 + size] = y3; + } + Element elem = dendrogram.makeElement(svgp); + SVGUtil.setCSSClass(elem, KEY_HIERLINE); + layer.appendChild(elem); + } + + final double margin = style.getSize(StyleLibrary.MARGIN); + final String transform = SVGUtil.makeMarginTransform(getWidth(), getHeight(), width, height, margin); + SVGUtil.setAtt(layer, SVGConstants.SVG_TRANSFORM_ATTRIBUTE, transform); + } + + /** + * Register the CSS classes. + * + * @param svgp the SVGPlot to register the CSS classes. + * @param linew Line width adjustment + */ + protected void setupCSS(SVGPlot svgp, double linew) { + final StyleLibrary style = context.getStyleLibrary(); + final double fontsize = style.getTextSize(StyleLibrary.KEY); + final String fontfamily = style.getFontFamily(StyleLibrary.KEY); + final String color = style.getColor(StyleLibrary.KEY); + + CSSClass keycaption = new CSSClass(svgp, KEY_CAPTION); + keycaption.setStatement(SVGConstants.CSS_FONT_SIZE_PROPERTY, fontsize); + keycaption.setStatement(SVGConstants.CSS_FONT_FAMILY_PROPERTY, fontfamily); + keycaption.setStatement(SVGConstants.CSS_FILL_PROPERTY, color); + keycaption.setStatement(SVGConstants.CSS_FONT_WEIGHT_PROPERTY, SVGConstants.CSS_BOLD_VALUE); + svgp.addCSSClassOrLogError(keycaption); + + CSSClass hierline = new CSSClass(svgp, KEY_HIERLINE); + hierline.setStatement(SVGConstants.CSS_STROKE_PROPERTY, color); + hierline.setStatement(SVGConstants.CSS_STROKE_WIDTH_PROPERTY, linew * style.getLineWidth("key.hierarchy") / StyleLibrary.SCALE); + hierline.setStatement(SVGConstants.CSS_STROKE_LINECAP_PROPERTY, SVGConstants.CSS_ROUND_VALUE); + hierline.setStatement(SVGConstants.CSS_FILL_PROPERTY, SVGConstants.CSS_NONE_VALUE); + svgp.addCSSClassOrLogError(hierline); + + svgp.updateStyleElement(); + } + + /** + * Register the CSS classes. + * + * @param svgp the SVGPlot to register the CSS classes. + * @param cspol Class styling policy + * @param linew Line width adjustment + */ + protected void setupCSS(SVGPlot svgp, ClassStylingPolicy cspol, double linew) { + setupCSS(svgp, linew); + StyleLibrary style = context.getStyleLibrary(); + ColorLibrary colors = style.getColorSet(StyleLibrary.PLOT); + + for(int i = cspol.getMinStyle(); i <= cspol.getMaxStyle(); i++) { + CSSClass hierline = new CSSClass(svgp, KEY_HIERLINE + "_" + i); + hierline.setStatement(SVGConstants.CSS_STROKE_PROPERTY, colors.getColor(i)); + hierline.setStatement(SVGConstants.CSS_STROKE_WIDTH_PROPERTY, linew * style.getLineWidth("key.hierarchy") / StyleLibrary.SCALE); + hierline.setStatement(SVGConstants.CSS_STROKE_LINECAP_PROPERTY, SVGConstants.CSS_ROUND_VALUE); + hierline.setStatement(SVGConstants.CSS_FILL_PROPERTY, SVGConstants.CSS_NONE_VALUE); + svgp.addCSSClassOrLogError(hierline); + } + + svgp.updateStyleElement(); + } + } + + /** + * Parameterization class. + * + * @author Erich Schubert + * + * @apiviz.exclude + */ + public static class Parameterizer extends AbstractParameterizer { + /** + * Dendrogram drawing style. + */ + public static final OptionID STYLE_ID = new OptionID("dendrogram.style", "Drawing style for dendrograms."); + + /** + * Drawing style. + */ + private Style style = Style.RECTANGULAR; + + @Override + protected void makeOptions(Parameterization config) { + super.makeOptions(config); + EnumParameter<Style> styleP = new EnumParameter<>(STYLE_ID, Style.class, Style.RECTANGULAR); + if(config.grab(styleP)) { + style = styleP.getValue(); + } + } + + @Override + protected DendrogramVisualization makeInstance() { + return new DendrogramVisualization(style); + } + } +}
\ No newline at end of file diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/EvaluationVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/EvaluationVisualization.java index b378c71a..12d16af2 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/EvaluationVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/EvaluationVisualization.java @@ -57,6 +57,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * * @author Erich Schubert * @author Sascha Goldhofer + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses StaticVisualizationInstance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/HistogramVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/HistogramVisualization.java index 1d3e8771..3051e365 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/HistogramVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/HistogramVisualization.java @@ -52,6 +52,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Visualizer to draw histograms. * * @author Erich Schubert + * @since 0.3 * * @apiviz.stereotype factory * @apiviz.uses StaticVisualizationInstance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/KeyVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/KeyVisualization.java index 7361bd4e..9676d943 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/KeyVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/KeyVisualization.java @@ -61,6 +61,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * TODO: also show in scatter plot detail view. * * @author Erich Schubert + * @since 0.3 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/LabelVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/LabelVisualization.java index c89d9c75..9727ace3 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/LabelVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/LabelVisualization.java @@ -42,6 +42,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * be used for dimension labels in the overview. * * @author Erich Schubert + * @since 0.4.0 * * @apiviz.stereotype factory * @apiviz.uses StaticVisualizationInstance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/PixmapVisualizer.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/PixmapVisualizer.java index b6fcdd57..99d7cd18 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/PixmapVisualizer.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/PixmapVisualizer.java @@ -45,6 +45,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Visualize an arbitrary pixmap result. * * @author Erich Schubert + * @since 0.3 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/SettingsVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/SettingsVisualization.java index 3efa04d1..d7786699 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/SettingsVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/SettingsVisualization.java @@ -47,6 +47,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Pseudo-Visualizer, that lists the settings of the algorithm- * * @author Erich Schubert + * @since 0.3 * * @apiviz.stereotype factory * @apiviz.uses StaticVisualizationInstance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/SimilarityMatrixVisualizer.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/SimilarityMatrixVisualizer.java index 0b64d6c3..007db56b 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/SimilarityMatrixVisualizer.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/SimilarityMatrixVisualizer.java @@ -50,6 +50,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Visualize a similarity matrix with object labels * * @author Erich Schubert + * @since 0.3 * * @apiviz.stereotype factory * @apiviz.uses Instance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/XYCurveVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/XYCurveVisualization.java index 3c620a8f..0939a309 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/XYCurveVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/XYCurveVisualization.java @@ -54,6 +54,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Visualizer to render a simple 2D curve such as a ROC curve. * * @author Erich Schubert + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses StaticVisualizationInstance oneway - - «create» diff --git a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/XYPlotVisualization.java b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/XYPlotVisualization.java index 3b07860d..0158cd0f 100644 --- a/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/XYPlotVisualization.java +++ b/addons/batikvis/src/main/java/de/lmu/ifi/dbs/elki/visualization/visualizers/visunproj/XYPlotVisualization.java @@ -51,6 +51,7 @@ import de.lmu.ifi.dbs.elki.visualization.visualizers.Visualization; * Visualizer to render a simple 2D curve such as a ROC curve. * * @author Erich Schubert + * @since 0.5.0 * * @apiviz.stereotype factory * @apiviz.uses StaticVisualizationInstance oneway - - «create» |