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+package de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans;
+
+/*
+ This file is part of ELKI:
+ Environment for Developing KDD-Applications Supported by Index-Structures
+
+ Copyright (C) 2015
+ Ludwig-Maximilians-Universität München
+ Lehr- und Forschungseinheit für Datenbanksysteme
+ ELKI Development Team
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Affero General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU Affero General Public License for more details.
+
+ You should have received a copy of the GNU Affero General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+import de.lmu.ifi.dbs.elki.algorithm.AbstractAlgorithm;
+import de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.quality.KMeansQualityMeasure;
+import de.lmu.ifi.dbs.elki.data.Clustering;
+import de.lmu.ifi.dbs.elki.data.NumberVector;
+import de.lmu.ifi.dbs.elki.data.model.MeanModel;
+import de.lmu.ifi.dbs.elki.data.type.TypeInformation;
+import de.lmu.ifi.dbs.elki.database.Database;
+import de.lmu.ifi.dbs.elki.database.relation.Relation;
+import de.lmu.ifi.dbs.elki.distance.distancefunction.DistanceFunction;
+import de.lmu.ifi.dbs.elki.distance.distancefunction.NumberVectorDistanceFunction;
+import de.lmu.ifi.dbs.elki.distance.distancefunction.PrimitiveDistanceFunction;
+import de.lmu.ifi.dbs.elki.logging.Logging;
+import de.lmu.ifi.dbs.elki.logging.progress.FiniteProgress;
+import de.lmu.ifi.dbs.elki.utilities.exceptions.AbortException;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.OptionID;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.CommonConstraints;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.Parameterization;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.IntParameter;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ObjectParameter;
+
+/**
+ * Run K-Means multiple times, and keep the best run.
+ *
+ * @author Stephan Baier
+ * @author Erich Schubert
+ *
+ * @param <V> Vector type
+ * @param <M> Model type
+ */
+public class BestOfMultipleKMeans<V extends NumberVector, M extends MeanModel> extends AbstractAlgorithm<Clustering<M>>implements KMeans<V, M> {
+ /**
+ * The logger for this class.
+ */
+ private static final Logging LOG = Logging.getLogger(BestOfMultipleKMeans.class);
+
+ /**
+ * Number of trials to do.
+ */
+ private int trials;
+
+ /**
+ * Variant of kMeans for the bisecting step.
+ */
+ private KMeans<V, M> innerkMeans;
+
+ /**
+ * Quality measure which should be used.
+ */
+ private KMeansQualityMeasure<? super V> qualityMeasure;
+
+ /**
+ * Constructor.
+ *
+ * @param trials Number of trials to do.
+ * @param innerkMeans K-Means variant to actually use.
+ * @param qualityMeasure Quality measure
+ */
+ public BestOfMultipleKMeans(int trials, KMeans<V, M> innerkMeans, KMeansQualityMeasure<? super V> qualityMeasure) {
+ super();
+ this.trials = trials;
+ this.innerkMeans = innerkMeans;
+ this.qualityMeasure = qualityMeasure;
+ }
+
+ @Override
+ public Clustering<M> run(Database database, Relation<V> relation) {
+ if(!(innerkMeans.getDistanceFunction() instanceof PrimitiveDistanceFunction)) {
+ throw new AbortException("K-Means results can only be evaluated for primitive distance functions, got: " + innerkMeans.getDistanceFunction().getClass());
+ }
+ @SuppressWarnings("unchecked")
+ final NumberVectorDistanceFunction<? super NumberVector> df = (NumberVectorDistanceFunction<? super NumberVector>) innerkMeans.getDistanceFunction();
+
+ Clustering<M> bestResult = null;
+ double bestCost = Double.NaN;
+ FiniteProgress prog = LOG.isVerbose() ? new FiniteProgress("K-means iterations", trials, LOG) : null;
+ for(int i = 0; i < trials; i++) {
+ Clustering<M> currentCandidate = innerkMeans.run(database, relation);
+ double currentCost = qualityMeasure.quality(currentCandidate, df, relation);
+
+ if(LOG.isVerbose()) {
+ LOG.verbose("Cost of candidate " + i + ": " + currentCost);
+ }
+
+ if(qualityMeasure.isBetter(currentCost, bestCost)) {
+ bestResult = currentCandidate;
+ bestCost = currentCost;
+ }
+ LOG.incrementProcessed(prog);
+ }
+ LOG.ensureCompleted(prog);
+
+ return bestResult;
+ }
+
+ @Override
+ public TypeInformation[] getInputTypeRestriction() {
+ return innerkMeans.getInputTypeRestriction();
+ }
+
+ @Override
+ public DistanceFunction<? super V> getDistanceFunction() {
+ return innerkMeans.getDistanceFunction();
+ }
+
+ @Override
+ public void setK(int k) {
+ innerkMeans.setK(k);
+ }
+
+ @Override
+ public void setDistanceFunction(NumberVectorDistanceFunction<? super V> distanceFunction) {
+ innerkMeans.setDistanceFunction(distanceFunction);
+ }
+
+ @Override
+ protected Logging getLogger() {
+ return LOG;
+ }
+
+ /**
+ * Parameterization class.
+ *
+ * @author Stephan Baier
+ * @author Erich Schubert
+ *
+ * @apiviz.exclude
+ *
+ * @param <V> Vector type
+ * @param <M> Model type
+ */
+ public static class Parameterizer<V extends NumberVector, M extends MeanModel> extends AbstractParameterizer {
+ /**
+ * Parameter to specify the iterations of the bisecting step.
+ */
+ public static final OptionID TRIALS_ID = new OptionID("kmeans.trials", "The number of trials to run.");
+
+ /**
+ * Parameter to specify the kMeans variant.
+ */
+ public static final OptionID KMEANS_ID = new OptionID("kmeans.algorithm", "KMeans variant to run multiple times.");
+
+ /**
+ * Parameter to specify the variant of quality measure.
+ */
+ public static final OptionID QUALITYMEASURE_ID = new OptionID("kmeans.qualitymeasure", "Quality measure variant for deciding which run to keep.");
+
+ /**
+ * Number of trials to perform.
+ */
+ protected int trials;
+
+ /**
+ * Variant of kMeans to use.
+ */
+ protected KMeans<V, M> kMeansVariant;
+
+ /**
+ * Quality measure.
+ */
+ protected KMeansQualityMeasure<? super V> qualityMeasure;
+
+ @Override
+ protected void makeOptions(Parameterization config) {
+ IntParameter trialsP = new IntParameter(TRIALS_ID);
+ trialsP.addConstraint(CommonConstraints.GREATER_EQUAL_ONE_INT);
+ if(config.grab(trialsP)) {
+ trials = trialsP.intValue();
+ }
+
+ ObjectParameter<KMeans<V, M>> kMeansVariantP = new ObjectParameter<>(KMEANS_ID, KMeans.class);
+ if(config.grab(kMeansVariantP)) {
+ kMeansVariant = kMeansVariantP.instantiateClass(config);
+ }
+
+ ObjectParameter<KMeansQualityMeasure<V>> qualityMeasureP = new ObjectParameter<>(QUALITYMEASURE_ID, KMeansQualityMeasure.class);
+ if(config.grab(qualityMeasureP)) {
+ qualityMeasure = qualityMeasureP.instantiateClass(config);
+ }
+ }
+
+ @Override
+ protected BestOfMultipleKMeans<V, M> makeInstance() {
+ return new BestOfMultipleKMeans<>(trials, kMeansVariant, qualityMeasure);
+ }
+ }
+}