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+package de.lmu.ifi.dbs.elki.distance.distancefunction.correlation;
+/*
+This file is part of ELKI:
+Environment for Developing KDD-Applications Supported by Index-Structures
+
+Copyright (C) 2011
+Ludwig-Maximilians-Universität München
+Lehr- und Forschungseinheit für Datenbanksysteme
+ELKI Development Team
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU Affero General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU Affero General Public License for more details.
+
+You should have received a copy of the GNU Affero General Public License
+along with this program. If not, see <http://www.gnu.org/licenses/>.
+*/
+
+import java.util.Arrays;
+
+import de.lmu.ifi.dbs.elki.data.NumberVector;
+import de.lmu.ifi.dbs.elki.distance.distancefunction.AbstractVectorDoubleDistanceFunction;
+import de.lmu.ifi.dbs.elki.math.MathUtil;
+
+/**
+ * Pearson correlation distance function for feature vectors.
+ *
+ * The Pearson correlation distance is computed from the Pearson correlation
+ * coefficient <code>r</code> as: <code>1-r</code>. Hence, possible values of
+ * this distance are between 0 and 2.
+ *
+ * The distance between two vectors will be low (near 0), if their attribute
+ * values are dimension-wise strictly positively correlated, it will be high
+ * (near 2), if their attribute values are dimension-wise strictly negatively
+ * correlated. For Features with uncorrelated attributes, the distance value
+ * will be intermediate (around 1).
+ *
+ * This variation is for weighted dimensions.
+ *
+ * @author Arthur Zimek
+ * @author Erich Schubert
+ */
+public class WeightedPearsonCorrelationDistanceFunction extends AbstractVectorDoubleDistanceFunction {
+ /**
+ * Weights
+ */
+ private double[] weights;
+
+ /**
+ * Provides a PearsonCorrelationDistanceFunction.
+ *
+ * @param weights Weights
+ */
+ public WeightedPearsonCorrelationDistanceFunction(double[] weights) {
+ super();
+ this.weights = weights;
+ }
+
+ /**
+ * Computes the Pearson correlation distance for two given feature vectors.
+ *
+ * The Pearson correlation distance is computed from the Pearson correlation
+ * coefficient <code>r</code> as: <code>1-r</code>. Hence, possible values of
+ * this distance are between 0 and 2.
+ *
+ * @param v1 first feature vector
+ * @param v2 second feature vector
+ * @return the Pearson correlation distance for two given feature vectors v1
+ * and v2
+ */
+ @Override
+ public double doubleDistance(NumberVector<?, ?> v1, NumberVector<?, ?> v2) {
+ return 1 - MathUtil.weightedPearsonCorrelationCoefficient(v1, v2, weights);
+ }
+
+ @Override
+ public boolean equals(Object obj) {
+ if(this == obj) {
+ return true;
+ }
+ if(obj == null) {
+ return false;
+ }
+ if (!this.getClass().equals(obj.getClass())) {
+ return false;
+ }
+ return Arrays.equals(this.weights, ((WeightedPearsonCorrelationDistanceFunction)obj).weights);
+ }
+} \ No newline at end of file