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Diffstat (limited to 'src/de/lmu/ifi/dbs/elki/index/preprocessed/knn/KNNJoinMaterializeKNNPreprocessor.java')
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1 files changed, 128 insertions, 0 deletions
diff --git a/src/de/lmu/ifi/dbs/elki/index/preprocessed/knn/KNNJoinMaterializeKNNPreprocessor.java b/src/de/lmu/ifi/dbs/elki/index/preprocessed/knn/KNNJoinMaterializeKNNPreprocessor.java new file mode 100644 index 00000000..b7c3f0ac --- /dev/null +++ b/src/de/lmu/ifi/dbs/elki/index/preprocessed/knn/KNNJoinMaterializeKNNPreprocessor.java @@ -0,0 +1,128 @@ +package de.lmu.ifi.dbs.elki.index.preprocessed.knn; + +import de.lmu.ifi.dbs.elki.algorithm.KNNJoin; +import de.lmu.ifi.dbs.elki.data.NumberVector; +import de.lmu.ifi.dbs.elki.database.relation.Relation; +import de.lmu.ifi.dbs.elki.distance.distancefunction.DistanceFunction; +import de.lmu.ifi.dbs.elki.distance.distancevalue.Distance; +import de.lmu.ifi.dbs.elki.index.tree.spatial.SpatialEntry; +import de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar.RStarTreeNode; +import de.lmu.ifi.dbs.elki.logging.Logging; +import de.lmu.ifi.dbs.elki.utilities.datastructures.heap.KNNList; + +/* + This file is part of ELKI: + Environment for Developing KDD-Applications Supported by Index-Structures + + Copyright (C) 2012 + Ludwig-Maximilians-Universität München + Lehr- und Forschungseinheit für Datenbanksysteme + ELKI Development Team + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU Affero General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU Affero General Public License for more details. + + You should have received a copy of the GNU Affero General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + */ + +/** + * Class to materialize the kNN using a spatial join on an R-tree. + * + * @author Erich Schubert + * + * @param <V> vector type + * @param <D> distance type + */ +public class KNNJoinMaterializeKNNPreprocessor<V extends NumberVector<V, ?>, D extends Distance<D>> extends AbstractMaterializeKNNPreprocessor<V, D, KNNList<D>> { + /** + * Logging class. + */ + private static final Logging logger = Logging.getLogger(KNNJoinMaterializeKNNPreprocessor.class); + + /** + * Constructor. + * + * @param relation Relation to index + * @param distanceFunction Distance function + * @param k k + */ + public KNNJoinMaterializeKNNPreprocessor(Relation<V> relation, DistanceFunction<? super V, D> distanceFunction, int k) { + super(relation, distanceFunction, k); + } + + @Override + protected void preprocess() { + // Run KNNJoin + KNNJoin<V, D, ?, ?> knnjoin = new KNNJoin<V, D, RStarTreeNode, SpatialEntry>(distanceFunction, k); + storage = knnjoin.run(relation.getDatabase(), relation); + } + + @Override + protected Logging getLogger() { + return logger; + } + + @Override + public String getLongName() { + return "knn-join materialized neighbors"; + } + + @Override + public String getShortName() { + return "knn-join"; + } + + /** + * The parameterizable factory. + * + * @author Erich Schubert + * + * @apiviz.landmark + * @apiviz.stereotype factory + * @apiviz.uses AbstractMaterializeKNNPreprocessor oneway - - «create» + * + * @param <O> The object type + * @param <D> The distance type + */ + public static class Factory<O extends NumberVector<O, ?>, D extends Distance<D>> extends AbstractMaterializeKNNPreprocessor.Factory<O, D, KNNList<D>> { + /** + * Constructor. + * + * @param k K + * @param distanceFunction distance function + */ + public Factory(int k, DistanceFunction<? super O, D> distanceFunction) { + super(k, distanceFunction); + } + + @Override + public KNNJoinMaterializeKNNPreprocessor<O, D> instantiate(Relation<O> relation) { + return new KNNJoinMaterializeKNNPreprocessor<O, D>(relation, distanceFunction, k); + } + + /** + * Parameterization class + * + * @author Erich Schubert + * + * @apiviz.exclude + * + * @param <O> Object type + * @param <D> Distance type + */ + public static class Parameterizer<O extends NumberVector<O, ?>, D extends Distance<D>> extends AbstractMaterializeKNNPreprocessor.Factory.Parameterizer<O, D> { + @Override + protected KNNJoinMaterializeKNNPreprocessor.Factory<O, D> makeInstance() { + return new KNNJoinMaterializeKNNPreprocessor.Factory<O, D>(k, distanceFunction); + } + } + } +}
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