1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
|
package de.lmu.ifi.dbs.elki.datasource.bundle;
/*
This file is part of ELKI:
Environment for Developing KDD-Applications Supported by Index-Structures
Copyright (C) 2012
Ludwig-Maximilians-Universität München
Lehr- und Forschungseinheit für Datenbanksysteme
ELKI Development Team
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
import java.io.IOException;
import java.nio.MappedByteBuffer;
import java.nio.channels.FileChannel;
import java.nio.channels.FileChannel.MapMode;
import java.util.ArrayList;
import de.lmu.ifi.dbs.elki.data.type.SimpleTypeInformation;
import de.lmu.ifi.dbs.elki.data.type.TypeInformationSerializer;
import de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil;
import de.lmu.ifi.dbs.elki.persistent.ByteBufferSerializer;
import de.lmu.ifi.dbs.elki.utilities.exceptions.AbortException;
/**
* Read an ELKI bundle file into a data stream.
*
* TODO: resize buffer when necessary?
*
* @author Erich Schubert
*
* @apiviz.uses FileChannel
*/
public class BundleReader implements BundleStreamSource {
/**
* Magic number, shared with {@link BundleReader}.
*/
public static final int MAGIC = BundleWriter.MAGIC;
/**
* The stream buffer.
*/
MappedByteBuffer buffer;
/**
* Bundle metadata.
*/
BundleMeta meta = null;
/**
* Input channel.
*/
FileChannel input;
/**
* Serializers to use.
*/
ArrayList<ByteBufferSerializer<?>> sers;
/**
* Current object.
*/
ArrayList<Object> data;
/**
* Constructor.
*
* @param input Input channel
*/
public BundleReader(FileChannel input) {
super();
this.input = input;
}
@Override
public BundleMeta getMeta() {
if (meta == null) {
openBuffer();
readMeta();
}
return meta;
}
/**
* Map the input file.
*/
void openBuffer() {
try {
buffer = input.map(MapMode.READ_ONLY, 0, input.size());
} catch (IOException e) {
throw new AbortException("Cannot map input bundle.", e);
}
}
/**
* Read the metadata.
*/
void readMeta() {
final int check = buffer.getInt();
if (check != MAGIC) {
throw new AbortException("File does not start with expected magic.");
}
final int nummeta = buffer.getInt();
assert (nummeta > 0);
meta = new BundleMeta(nummeta);
sers = new ArrayList<ByteBufferSerializer<?>>(nummeta);
data = new ArrayList<Object>(nummeta);
for (int i = 0; i < nummeta; i++) {
try {
@SuppressWarnings("unchecked")
SimpleTypeInformation<? extends Object> type = (SimpleTypeInformation<? extends Object>) TypeInformationSerializer.STATIC.fromByteBuffer(buffer);
meta.add(type);
sers.add(type.getSerializer());
} catch (UnsupportedOperationException e) {
throw new AbortException("Deserialization failed: "+e.getMessage(), e);
} catch (IOException e) {
throw new AbortException("IO error", e);
}
}
}
/**
* Read an object.
*/
void readObject() {
data.clear();
for (ByteBufferSerializer<?> ser : sers) {
try {
data.add(ser.fromByteBuffer(buffer));
} catch (UnsupportedOperationException e) {
throw new AbortException("Deserialization failed.", e);
} catch (IOException e) {
throw new AbortException("IO error", e);
}
}
}
@Override
public Event nextEvent() {
// Send initial meta
if (meta == null) {
return Event.META_CHANGED;
}
if (buffer.remaining() == 0) {
ByteArrayUtil.unmapByteBuffer(buffer);
return Event.END_OF_STREAM;
}
readObject();
return Event.NEXT_OBJECT;
}
@Override
public Object data(int rnum) {
return data.get(rnum);
}
}
|