diff options
Diffstat (limited to 'Documentation/sphinx')
| -rw-r--r-- | Documentation/sphinx/Makefile.in | 910 | ||||
| -rwxr-xr-x | Documentation/sphinx/source/pyplots/trajectory.py | 88 | ||||
| -rw-r--r-- | Documentation/sphinx/source/test.py | 264 |
3 files changed, 352 insertions, 910 deletions
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clean-libtool cscopelist-am ctags-am distclean \ - distclean-generic distclean-libtool distdir dvi dvi-am html \ - html-am info info-am install install-am install-data \ - install-data-am install-dvi install-dvi-am install-exec \ - install-exec-am install-html install-html-am install-info \ - install-info-am install-man install-pdf install-pdf-am \ - install-ps install-ps-am install-strip installcheck \ - installcheck-am installdirs maintainer-clean \ - maintainer-clean-generic mostlyclean mostlyclean-generic \ - mostlyclean-libtool pdf pdf-am ps ps-am recheck tags-am \ - uninstall uninstall-am - -.PRECIOUS: Makefile - - --include $(top_srcdir)/sphinx.make - -publish: html - rsync -avz build/html/ picca@people.debian.org:public_html/hkl - -# Tell versions [3.59,3.63) of GNU make to not export all variables. -# Otherwise a system limit (for SysV at least) may be exceeded. -.NOEXPORT: diff --git a/Documentation/sphinx/source/pyplots/trajectory.py b/Documentation/sphinx/source/pyplots/trajectory.py new file mode 100755 index 0000000..46f49ff --- /dev/null +++ b/Documentation/sphinx/source/pyplots/trajectory.py @@ -0,0 +1,88 @@ +#!/usr/bin/env python +# -*- coding: utf-8 -*- + +import math +import numpy + +from gi.repository import GLib +from gi.repository import Hkl + +import matplotlib +matplotlib.use('Agg') +import matplotlib.pyplot as plt + +detector = Hkl.Detector.factory_new(Hkl.DetectorType(0)) +detector.idx_set(1) + +config = Hkl.geometry_factory_get_config_from_type( + Hkl.GeometryType.KAPPA6C) +geometry = Hkl.Geometry.factory_newv(config, [math.radians(50.)]) +delta = geometry.axes()[5] +# delta.parameter.range.min = 0 +# values_w = [0., -60, 0., 90., 0., 60.] +values_w = [0., 120, 0., -90., 0., 60.] +geometry.set_axis_values_unit(values_w) +axis_names = [axis.name for axis in geometry.axes()] + +sample = Hkl.Sample.new("toto") +lattice = sample.lattice_get() +lattice.set(1.54, 1.54, 1.54, + math.radians(90.0), + math.radians(90.0), + math.radians(90.)) +sample.lattice_set(lattice) + +# get all engines for a given configuration +engines = Hkl.EngineList.factory(config) + +# prepare the engines to work with the related geometry, detector and +# sample +engines.init(geometry, detector, sample) + +#[0, 0, 1] -> [0, 1, 1] +n = 10 +hkl0 = [0, 0, 1] +hkl1 = [0, 1, 1] +h = numpy.linspace(hkl0[0], hkl1[0], n + 1) +k = numpy.linspace(hkl0[1], hkl1[1], n + 1) +l = numpy.linspace(hkl0[2], hkl1[2], n + 1) + +# get the hkl engine +hkl = engines.get_by_name("hkl") +eulerians = engines.get_by_name("eulerians") +pseudo_names = [ + pseudo_axis.parameter.name for pseudo_axis in eulerians.pseudo_axes()] + +# set the hkl engine and get the results +trajectories = [] + +for idx, h, k, l in zip(range(n), h, k, l): + try: + hkl.set_values_unit([h, k, l]) + # print geometry.get_axis_values_unit() + if engines.geometries.len != 4: + print idx, h, k, l + for i, item in enumerate(engines.geometries().items()): + try: + trajectories[i] + except IndexError: + trajectories.append([]) + values = item.geometry.get_axis_values_unit() + print values, geometry.distance(item.geometry) + trajectories[i].append(values) + print + except GLib.GError, err: + pass + +plt.plot(trajectories[0]) +plt.ylim(-180, 180) + + +def full(): + plt.figure() + maximum = min(4, len(trajectories)) + for i, trajectory in enumerate(trajectories): + if i < maximum: + plt.subplot(1, maximum, i + 1) + plt.plot(trajectory) + plt.ylim(-180, 180) diff --git a/Documentation/sphinx/source/test.py b/Documentation/sphinx/source/test.py new file mode 100644 index 0000000..f040b9a --- /dev/null +++ b/Documentation/sphinx/source/test.py @@ -0,0 +1,264 @@ +# -*- encoding: utf-8 -*- +""" +This file is part of the hkl library. + +The hkl library is free software: you can redistribute it and/or modify +it under the terms of the GNU General Public License as published by +the Free Software Foundation, either version 3 of the License, or +(at your option) any later version. + +The hkl library is distributed in the hope that it will be useful, +but WITHOUT ANY WARRANTY; without even the implied warranty of +MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +GNU General Public License for more details. + +You should have received a copy of the GNU General Public License +along with the hkl library. If not, see <http://www.gnu.org/licenses/>. + +Copyright (C) 2011-2013 Synchrotron SOLEIL + L'Orme des Merisiers Saint-Aubin + BP 48 91192 GIF-sur-YVETTE CEDEX +Authors: Picca Frédéric-Emmanuel <picca@synchrotron-soleil.fr> +""" +import math +from gi.repository import Hkl + +""" +static int test_engine(struct hkl_test *test, + HklEngine *engine, HklGeometry *geometry, + HklDetector *detector, HklSample *sample) +{ + size_t i, j, k, f_idx; + double *values = alloca(HKL_LIST_LEN(engine->pseudoAxes) * sizeof(*values)); + int miss = 0; + + /* randomize the geometry */ + hkl_geometry_randomize(geometry); + + for(f_idx=0; f_idx<HKL_LIST_LEN(engine->modes); ++f_idx) { + hkl_engine_current_mode_set(engine, f_idx); + /* for now unactive the eulerians check */ + if(!strcmp(engine->mode->name, "eulerians")) + continue; + miss = 0; + for(i=0;i<N;++i) { + int res; + size_t len = HKL_LIST_LEN(engine->pseudoAxes); + + /* randomize the pseudoAxes values */ + for(j=0; j<len; ++j) { + HklParameter *parameter = (HklParameter *)(engine->pseudoAxes[j]); + hkl_parameter_randomize(parameter); + + values[j] = parameter->value; + } + + /* randomize the parameters */ + for(j=0; j<HKL_LIST_LEN(engine->mode->parameters); ++j) + hkl_parameter_randomize(&engine->mode->parameters[j]); + + /* pseudo -> geometry */ + hkl_engine_initialize(engine, NULL); + /* hkl_engine_fprintf(stderr, engine); */ + res = hkl_engine_set(engine, NULL); + + /* geometry -> pseudo */ + if (res == HKL_SUCCESS) { + size_t g_len = hkl_geometry_list_len(engine->engines->geometries); + /* check all finded geometries */ + /* hkl_engine_fprintf(stderr, engine); */ + + for(j=0; j<g_len; ++j) { + /* first modify the pseudoAxes values */ + /* to be sure that the result is the */ + /* computed result. */ + for(k=0; k<len; ++k) + ((HklParameter *)engine->pseudoAxes[k])->value = 0.; + + hkl_geometry_init_geometry(geometry, + engine->engines->geometries->items[j]->geometry); + hkl_engine_get(engine, NULL); + + for(k=0; k<len; ++k) { + HKL_ASSERT_DOUBLES_EQUAL(values[k], + ((HklParameter *)engine->pseudoAxes[k])->value, + HKL_EPSILON); + } + } + } else + miss++; + } + +#if with_log + fprintf(stderr, "\n\"%s\" \"%s\" missed : %d", + engine->geometry->name, + engine->mode->name, miss); +#endif + + } + +#if with_log + fprintf(stderr, "\n"); +#endif + + return HKL_TEST_PASS; +} + +#define test_engines(test, engines) do{ \ + size_t i; \ + for(i=0; i<HKL_LIST_LEN(engines->engines); ++i){ \ + if (!test_engine(test, engines->engines[i], \ + engines->geometry, \ + engines->detector, \ + engines->sample)) \ + return HKL_TEST_FAIL; \ + } \ + }while(0) +""" + + +def test_all(): + detector = Hkl.Detector().factory_new(getattr(Hkl.DetectorType, '0D')) + + # attache to the second holder + detector.idx = 1 + + # create the right diffractometer geometry + config = Hkl.Geometry.factory_get_config_from_type(Hkl.GeometryType.KAPPA6C) + geometry = Hkl.Geometry.factory_newv(config, [50. * math.pi / 180.]) + geometry.source.wave_length = 1.54 + + # configure the sample + sample = Hkl.Sample.new("toto") + sample.set_lattice(1.54, 1.54, 1.54, 90., 90., 90.) + + # create the Engines + engines = Hkl.engine_list_factory(config) + for engine in engines.engines: + print engine + +test_all() +""" + const HklGeometryConfig *config; + HklGeometry *geometry = NULL; + HklDetector *detector = hkl_detector_factory_new(HKL_DETECTOR_TYPE_0D); + HklSample *sample = hkl_sample_new("test", HKL_SAMPLE_TYPE_MONOCRYSTAL); + HklEngineList *engines; + + /* attach to the second holder */ + detector->idx = 1; + + /* test all E4CV engines */ + config = hkl_geometry_factory_get_config_from_type(HKL_GEOMETRY_TYPE_EULERIAN4C_VERTICAL); + geometry = hkl_geometry_factory_new(config); + engines = hkl_engine_list_factory(config); + hkl_engine_list_init(engines, geometry, detector, sample); + test_engines(test, engines); + hkl_geometry_free(geometry); + hkl_engine_list_free(engines); + + /* test all E6C HKL engines */ + config = hkl_geometry_factory_get_config_from_type(HKL_GEOMETRY_TYPE_EULERIAN6C); + geometry = hkl_geometry_factory_new(config); + engines = hkl_engine_list_factory(config); + hkl_engine_list_init(engines, geometry, detector, sample); + test_engines(test, engines); + hkl_geometry_free(geometry); + hkl_engine_list_free(engines); + + /* test all K4CV HKL engines */ + config = hkl_geometry_factory_get_config_from_type(HKL_GEOMETRY_TYPE_KAPPA4C_VERTICAL); + geometry = hkl_geometry_factory_new(config, 50 * HKL_DEGTORAD); + engines = hkl_engine_list_factory(config); + hkl_engine_list_init(engines, geometry, detector, sample); + test_engines(test, engines); + hkl_geometry_free(geometry); + hkl_engine_list_free(engines); + + /* test all K6C engines */ + config = hkl_geometry_factory_get_config_from_type(HKL_GEOMETRY_TYPE_KAPPA6C); + geometry = hkl_geometry_factory_new(config, 50 * HKL_DEGTORAD); + engines = hkl_engine_list_factory(config); + hkl_engine_list_init(engines, geometry, detector, sample); + test_engines(test, engines); + hkl_geometry_free(geometry); + hkl_engine_list_free(engines); + + /* test all ZAXIS engines */ + config = hkl_geometry_factory_get_config_from_type(HKL_GEOMETRY_TYPE_ZAXIS); + geometry = hkl_geometry_factory_new(config); + engines = hkl_engine_list_factory(config); + hkl_engine_list_init(engines, geometry, detector, sample); + test_engines(test, engines); + hkl_geometry_free(geometry); + hkl_engine_list_free(engines); + + /* test all SOLEIL SIXS MED 2+2 engines */ + config = hkl_geometry_factory_get_config_from_type(HKL_GEOMETRY_TYPE_SOLEIL_SIXS_MED_2_2); + geometry = hkl_geometry_factory_new(config); + engines = hkl_engine_list_factory(config); + hkl_engine_list_init(engines, geometry, detector, sample); + test_engines(test, engines); + hkl_geometry_free(geometry); + hkl_engine_list_free(engines); + + /* test all SOLEIL MARS engines */ + config = hkl_geometry_factory_get_config_from_type(HKL_GEOMETRY_TYPE_SOLEIL_MARS); + geometry = hkl_geometry_factory_new(config); + engines = hkl_engine_list_factory(config); + hkl_engine_list_init(engines, geometry, detector, sample); + test_engines(test, engines); + hkl_geometry_free(geometry); + hkl_engine_list_free(engines); + + /* test all SOLEIL SIXS MED 1+2 engines */ + config = hkl_geometry_factory_get_config_from_type(HKL_GEOMETRY_TYPE_SOLEIL_SIXS_MED_1_2); + geometry = hkl_geometry_factory_new(config); + engines = hkl_engine_list_factory(config); + hkl_engine_list_init(engines, geometry, detector, sample); + test_engines(test, engines); + hkl_geometry_free(geometry); + hkl_engine_list_free(engines); + + /* test all PETRA3 P09 EH2 engines */ + config = hkl_geometry_factory_get_config_from_type(HKL_GEOMETRY_TYPE_PETRA3_P09_EH2); + geometry = hkl_geometry_factory_new(config); + engines = hkl_engine_list_factory(config); + hkl_engine_list_init(engines, geometry, detector, sample); + test_engines(test, engines); + hkl_geometry_free(geometry); + hkl_engine_list_free(engines); + + /* test all SOLEIL SIXS MED 2+3 engines */ + config = hkl_geometry_factory_get_config_from_type(HKL_GEOMETRY_TYPE_SOLEIL_SIXS_MED_2_3); + geometry = hkl_geometry_factory_new(config); + engines = hkl_pseudo_axis_engine_list_factory(config); + hkl_pseudo_axis_engine_list_init(engines, geometry, detector, sample); + test_engines(test, engines); + hkl_geometry_free(geometry); + hkl_pseudo_axis_engine_list_free(engines); + + /* test all SOLEIL SIRIUS TURRET engines */ + config = hkl_geometry_factory_get_config_from_type(HKL_GEOMETRY_TYPE_SOLEIL_SIRIUS_TURRET); + geometry = hkl_geometry_factory_new(config); + engines = hkl_pseudo_axis_engine_list_factory(config); + hkl_pseudo_axis_engine_list_init(engines, geometry, detector, sample); + test_engines(test, engines); + hkl_geometry_free(geometry); + hkl_pseudo_axis_engine_list_free(engines); + + /* test all SOLEIL SIRIUS KAPPA engines */ + config = hkl_geometry_factory_get_config_from_type(HKL_GEOMETRY_TYPE_SOLEIL_SIRIUS_KAPPA); + geometry = hkl_geometry_factory_new(config, 50 * HKL_DEGTORAD); + engines = hkl_pseudo_axis_engine_list_factory(config); + hkl_pseudo_axis_engine_list_init(engines, geometry, detector, sample); + test_engines(test, engines); + hkl_geometry_free(geometry); + hkl_pseudo_axis_engine_list_free(engines); + + hkl_detector_free(detector); + hkl_sample_free(sample); + + return HKL_TEST_PASS; +} +""" |