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|
{-# LANGUAGE CPP #-}
{-# LANGUAGE OverloadedStrings #-}
module Hkl.Projects.Diffabs.Martinetto
( martinetto
, martinetto'
) where
import Data.Array.Repa (DIM1, ix1)
import Numeric.LinearAlgebra (ident)
import System.FilePath ((</>))
import Text.Printf (printf)
import Prelude hiding (concat, lookup, readFile, writeFile)
import Hkl
-- | Samples
project :: FilePath
project = "/nfs/ruche-diffabs/diffabs-users/99160066/"
published :: FilePath
published = project </> "published-data"
h5path' :: NxEntry -> DataFrameH5Path XrdOneD
h5path' nxentry =
XrdOneDH5Path
(DataItemH5 (nxentry </> image) StrictDims)
(DataItemH5 (nxentry </> beamline </> gamma) ExtendDims)
(DataItemH5 (nxentry </> delta) ExtendDims)
(DataItemH5 (nxentry </> beamline </> wavelength) StrictDims)
where
beamline :: String
beamline = beamlineUpper Diffabs
image = "scan_data/data_53"
gamma = "d13-1-cx1__EX__DIF.1-GAMMA__#1/raw_value"
delta = "scan_data/actuator_1_1"
wavelength = "D13-1-C03__OP__MONO__#1/wavelength"
sampleCalibration :: XRDCalibration Xpad32
sampleCalibration = XRDCalibration { xrdCalibrationName = "calibration"
, xrdCalibrationOutputDir = published </> "calibration"
, xrdCalibrationDetector = Xpad32
, xrdCalibrationCalibrant = CeO2
, xrdCalibrationEntries = entries
}
where
idxs :: [Int]
idxs = [3, 6, 9, 15, 18, 21, 24, 27, 30, 33, 36, 39, 43]
entry :: Int -> XRDCalibrationEntry
entry idx = XRDCalibrationEntryNxs
{ xrdCalibrationEntryNxs'Nxs = mkNxs (published </> "calibration" </> "XRD18keV_26.nxs") "scan_26" h5path'
, xrdCalibrationEntryNxs'Idx = idx
, xrdCalibrationEntryNxs'NptPath = published </> "calibration" </> printf "XRD18keV_26.nxs_%02d.npt" idx
}
entries :: [XRDCalibrationEntry]
entries = [ entry idx | idx <- idxs]
sampleRef :: XRDRef
sampleRef = XRDRef "reference"
(published </> "calibration")
(XrdRefNxs
(mkNxs (published </> "calibration" </> "XRD18keV_26.nxs") "scan_26" h5path')
6 -- BEWARE only the 6th poni was generated with the right Xpad_flat geometry.
)
h5path :: NxEntry -> DataFrameH5Path XrdOneD
h5path nxentry =
XrdOneDH5Path
(DataItemH5 (nxentry </> image) StrictDims)
(DataItemH5 (nxentry </> beamline </> gamma) ExtendDims)
(DataItemH5 (nxentry </> delta) ExtendDims)
(DataItemH5 (nxentry </> beamline </> wavelength) StrictDims)
where
beamline :: String
beamline = beamlineUpper Diffabs
image = "scan_data/data_58"
gamma = "D13-1-CX1__EX__DIF.1-GAMMA__#1/raw_value"
delta = "scan_data/actuator_1_1"
wavelength = "D13-1-C03__OP__MONO__#1/wavelength"
bins :: DIM1
bins = ix1 8000
multibins :: DIM1
multibins = ix1 25000
threshold :: Maybe Threshold
threshold = Just (Threshold 800)
skipedFrames :: [Int]
skipedFrames = []
ceo2 :: XRDSample
ceo2 = XRDSample "CeO2"
(published </> "CeO2")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (published </> "calibration" </> "XRD18keV_26.nxs") "scan_26" h5path' ]
]
n27t2 :: XRDSample
n27t2 = XRDSample "N27T2"
(published </> "N27T2")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "N27T2_14.nxs") "scan_14" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "N27T2_17.nxs") "scan_17" h5path
]
]
r23 :: XRDSample
r23 = XRDSample "R23"
(published </> "R23")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "R23_6.nxs") "scan_6" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "R23_12.nxs") "scan_12" h5path
]
]
r18 :: XRDSample
r18 = XRDSample "R18"
(published </> "R18")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "R18_20.nxs") "scan_20" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "R18_24.nxs") "scan_24" h5path
]
]
a3 :: XRDSample
a3 = XRDSample "A3"
(published </> "A3")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "A3_13.nxs") "scan_13" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "A3_14.nxs") "scan_14" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "A3_15.nxs") "scan_15" h5path
]
]
a2 :: XRDSample
a2 = XRDSample "A2"
(published </> "A2")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "A2_14.nxs") "scan_14" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "A2_17.nxs") "scan_17" h5path
]
]
a26 :: XRDSample
a26 = XRDSample "A26"
(published </> "A26")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "A26_50.nxs") "scan_50" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "A26_51.nxs") "scan_51" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "A26_52.nxs") "scan_52" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "A26_53.nxs") "scan_53" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "A26_54.nxs") "scan_54" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "A26_55.nxs") "scan_55" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "A26_56.nxs") "scan_56" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "A26_57.nxs") "scan_57" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "A26_58.nxs") "scan_58" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "A26_59.nxs") "scan_59" h5path
]
]
d2 :: XRDSample
d2 = XRDSample "D2"
(published </> "D2")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "D2_16.nxs") "scan_16" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "D2_17.nxs") "scan_17" h5path
]
]
d3 :: XRDSample
d3 = XRDSample "D3"
(published </> "D3")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "D3_14.nxs") "scan_14" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "D3_15.nxs") "scan_15" h5path
]
]
f30 :: XRDSample
f30 = XRDSample "F30"
(published </> "F30")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "F30_11.nxs") "scan_11" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "F30_12.nxs") "scan_12" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "F30_13.nxs") "scan_13" h5path
]
]
r11 :: XRDSample
r11 = XRDSample "R11"
(published </> "R11")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "R11_5.nxs") "scan_5" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "R11_6.nxs") "scan_6" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "R11_7.nxs") "scan_7" h5path
]
]
d16 :: XRDSample
d16 = XRDSample "D16"
(published </> "D16")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "D16_12.nxs") "scan_12" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "D16_15.nxs") "scan_15" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "D16_17.nxs") "scan_17" h5path
]
]
k9a2 :: XRDSample
k9a2 = XRDSample "K9A2"
(published </> "K9A2")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "K9A2_1_31.nxs") "scan_31" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "K9A2_1_32.nxs") "scan_32" h5path
]
]
r34n1 :: XRDSample
r34n1 = XRDSample "R34N1"
(published </> "R34N1")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "R34N1_28.nxs") "scan_28" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-27" </> "R34N1_37.nxs") "scan_37" h5path
]
]
r35n1 :: XRDSample
r35n1 = XRDSample "R35N1"
(published </> "R35N1")
[ XrdNxs bins multibins threshold skipedFrames (XrdSourceNxs n) | n <-
[ mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "R35N1_25.nxs") "scan_19" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "R35N1_26.nxs") "scan_20" h5path
, mkNxs (project </> "2016" </> "Run2" </> "2016-03-26" </> "R35N1_27.nxs") "scan_21" h5path
]
]
-- meshSample :: String
-- meshSample = project </> "2016" "Run2" "2016-03-28" "MELLE_29.nxs"
-- scan_29 scan_data actuator_1_1 actuator_2_1 data_58 (images)
-- | Main
martinetto :: IO ()
martinetto = do
-- lire le ou les ponis de référence ainsi que leur géométrie
-- associée.
-- let samples = [ceo2, a2, a3, a26, d2, d3, d16, f30, k9a2, n27t2, r11, r18, r23, r34n1, r35n1]
let samples = [ceo2]
p <- getPoniExtRef sampleRef
-- flip the ref poni in order to fit the reality
-- let poniextref = Hkl.PyFAI.PoniExt.flip p
let poniextref = p
-- integrate each step of the scan
let params = XrdOneDParams poniextref Nothing Lut
integrate params samples
-- plot de la figure. (script python ou autre ?)
return ()
martinetto' :: IO ()
martinetto' = do
let samples = [ceo2, a2, a3, a26, d2, d3, d16, f30, k9a2, n27t2, r11, r18, r23, r34n1, r35n1]
let mflat = Nothing
p <- getPoniExtRef sampleRef
-- flip the ref poni in order to fit the reality
-- let poniextref = p
let poniextref = move p (Pose (MyMatrix HklB (ident 3)))
-- let poniextref = setPose (Hkl.PyFAI.PoniExt.flip p) (MyMatrix HklB (ident 3))
-- full calibration
poniextref' <- calibrate sampleCalibration poniextref
-- print p
print poniextref
print poniextref'
-- integrate each step of the scan
integrateMulti (XrdOneDParams poniextref' mflat Csr) samples
return ()
|
