diff options
author | Drew Parsons <dparsons@debian.org> | 2023-06-18 01:59:46 +0200 |
---|---|---|
committer | Drew Parsons <dparsons@debian.org> | 2023-06-18 01:59:46 +0200 |
commit | f9c64d1361220bedf0f24d2862708a7804c61d1b (patch) | |
tree | b4f2a0d203dbb3ec934b63a0fcef52bb038284b3 | |
parent | a8b0f21418624e101f501ef5a08ae5b31b3e2b7f (diff) | |
parent | c563d3b378ee976a944245d6f26686cb64982525 (diff) |
lmfit-py (1.2.1-1) unstable; urgency=medium
* Team upload.
* New upstream release.
* Build-Depends: python3-setuptools-scm
- drop debian patch preserve_version.patch
- closes: #1034585
* update versioned Build-Depends
python3-asteval (>= 0.9.28~),
python3-numpy (>= 1.19~),
python3-scipy (>= 1.6~)
[dgit import unpatched lmfit-py 1.2.1-1]
-rw-r--r-- | debian/changelog | 255 | ||||
-rw-r--r-- | debian/control | 142 | ||||
-rw-r--r-- | debian/copyright | 32 | ||||
-rw-r--r-- | debian/patches/0004-jupyter_sphinx-is-not-yet-working-on-Debian.patch | 19 | ||||
-rw-r--r-- | debian/patches/deactivate_test.patch | 22 | ||||
-rw-r--r-- | debian/patches/series | 2 | ||||
-rw-r--r-- | debian/python-lmfit-doc.doc-base | 9 | ||||
-rw-r--r-- | debian/python3-lmfit.remove | 1 | ||||
-rwxr-xr-x | debian/rules | 26 | ||||
-rw-r--r-- | debian/source/format | 1 | ||||
-rw-r--r-- | debian/tests/control | 16 | ||||
-rw-r--r-- | debian/upstream/metadata | 4 | ||||
-rw-r--r-- | debian/watch | 6 |
13 files changed, 535 insertions, 0 deletions
diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..03186ed --- /dev/null +++ b/debian/changelog @@ -0,0 +1,255 @@ +lmfit-py (1.2.1-1) unstable; urgency=medium + + * Team upload. + * New upstream release. + * Build-Depends: python3-setuptools-scm + - drop debian patch preserve_version.patch + - closes: #1034585 + * update versioned Build-Depends + python3-asteval (>= 0.9.28~), + python3-numpy (>= 1.19~), + python3-scipy (>= 1.6~) + + -- Drew Parsons <dparsons@debian.org> Sun, 18 Jun 2023 01:59:46 +0200 + +lmfit-py (1.1.0-1) unstable; urgency=medium + + * Team upload. + + [ Debian Janitor ] + * Remove constraints unnecessary since buster (oldstable): + + Build-Depends: Drop versioned constraint on python3-uncertainties. + + [ Drew Parsons ] + * New upstream release. Closes: #1026737, #1027172, #1027226. + * Build-Depends: pybuild-plugin-pyproject to use pyproject.toml + * drop debian patches + - 0003-upstream-fix-for-scipy-1.7.0.patch applied upstream + - exclude_failing_test.patch, example_emcee_Model_interface.py is + an example not a test (needs corner module to run, which is not + packaged for debian) + * add debian patch preserve_version.patch to prevent setuptools-scm + from corrupting version.py + * dh_installdocs override: prefix example_emcee_Model_interface.py + with nodoc_ to prevent processing by sphinx (corner module is not + available) + * override_dh_installdocs-indep copies extensions.py manually when + building docs (following doc/Makefile). extensions.py is longer + shipped in upstream source tarball + * Build-Depends: python3-pytest-cov <!nocheck> + - execute_before_dh_python3: delete coverage (htmlcov) files from + installation dirs (they were generated by build-time tests) + * register html docs with doc-base + * Standards-Version: 4.6.2 + + -- Drew Parsons <dparsons@debian.org> Fri, 30 Dec 2022 17:46:34 +0100 + +lmfit-py (1.0.2-1) unstable; urgency=medium + + * New upstream version 1.0.2 + * d/control: + + Used dh-sequence-X + + Added Build-Depends python3-sympy <!nodoc> + * d/rules: Simplified thanks to dh-sequence-X + * d/p/0003-upstream-fix-for-scipy-1.7.0.patch + * Bug fix: "scipy breaks lmfit-py autopkgtest", thanks to Paul Gevers + (Closes: #992674). + * Bump debhelper from old 12 to 13. + * Update standards version to 4.5.1, no changes needed. + * Apply multi-arch hints. + + python-lmfit-doc: Add Multi-Arch: foreign. + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sat, 04 Sep 2021 11:00:36 +0200 + +lmfit-py (1.0.1-6) unstable; urgency=medium + + * Team upload + + [ Picca Frédéric-Emmanuel ] + * Acknowledge Ole Streicher for fixing #987459 + + [ Graham Inggs ] + * Skip test_model_nan_policy and test_manypeaks_speed (Closes: #976952) + + -- Graham Inggs <ginggs@debian.org> Thu, 06 May 2021 08:32:40 +0000 + +lmfit-py (1.0.1-5) unstable; urgency=medium + + * Bug fix: "python-lmfit-doc is empty", thanks to Adrian Bunk (Closes: + #987459). + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sat, 01 May 2021 07:44:52 +0200 + +lmfit-py (1.0.1-4) unstable; urgency=medium + + * Bug fix: "copyright file missing (policy 12.5)", thanks to Andreas + Beckmann (Closes: #983827). + + -- Picca Frédéric-Emmanuel <picca@debian.org> Tue, 02 Mar 2021 11:41:36 +0100 + +lmfit-py (1.0.1-3) unstable; urgency=medium + + * d/patches/python3.9.patch: Fix test that fails under Python 3.9 because a + module name changed. (Closes: #972604) + * d/control: Add myself to Uploaders. + + -- Michael Hudson-Doyle <mwhudson@debian.org> Thu, 22 Oct 2020 08:34:34 +1300 + +lmfit-py (1.0.1-2) unstable; urgency=medium + + * Do not build the doc for now + * d/control: Removed jupyter-sphinx as Build-Depends. + + -- Picca Frédéric-Emmanuel <picca@debian.org> Tue, 08 Sep 2020 14:50:54 +0200 + +lmfit-py (1.0.1-1) unstable; urgency=medium + + [ Debian Janitor ] + * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, + Repository-Browse. + + [ Picca Frédéric-Emmanuel ] + * New upstream version 1.0.1 + * d/control: Added Rules-Requires-Root: no + * d/control: Standards-Verion bumped to 4.3.0 (nothing to do) + * d/rules: examples was not meant to be installed (Closes: #947265) + * d/rules: Build the documentation + * d/tests/control: Now it works. + + -- Picca Frédéric-Emmanuel <picca@debian.org> Mon, 03 Aug 2020 11:21:26 +0200 + +lmfit-py (1.0.0-1) unstable; urgency=medium + + [ Alexandre Marie ] + * Fixed compatibility with python3.8 (Closes: #943786) + * Forced asteval version to >=0.9.16 + + [ Picca Frédéric-Emmanuel ] + * added jupyter-sphinx as Build-Depends + * Forgotten with the previous upload (Closes: #934871, #922111) + * Do not build the documentation for now. + + [ Andreas Tille ] + * Use secure URI in Homepage field. + * Fix day-of-week for changelog entry 0.8.3+dfsg.1-1~exp1. + * Build-Depends: python3-sphinx-gallery + TODO: + Exception occurred: + File "/usr/lib/python3/dist-packages/sphinx_gallery/gen_gallery.py", line 313, in sumarize_failing_examples + "\n" + "-" * 79) + ValueError: Here is a summary of the problems encountered when running the examples + + -- Picca Frédéric-Emmanuel <picca@debian.org> Mon, 23 Dec 2019 13:52:39 +0100 + +lmfit-py (0.9.14-1) unstable; urgency=medium + + [ Picca Frédéric-Emmanuel ] + * New upstream version 0.9.14 + * d/tests: Use AUTOPKGTEST_TMP instead of ADTTMP. + * Use debhelper-compat instead of debian/compat. + * Use 'python3 -m sphinx' instead of sphinx-build for building docs. + * Added the salsa-ci.yml file. + * d/control: Added python3-ipython to Build-Depends. + * unactivated the doc build until jupyter_sphinx is available. + * replace nose -> pytest + * install doc via d/rules + * Remove Python2 module (Closes: #936960) + * switched to compat level 12 + * Bumped Standards-Version to 4.4.1 (nothing to do) + + [ Andreas Tille ] + * New upstream version 0.9.11+dfsg + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sun, 20 Oct 2019 16:43:41 +0200 + +lmfit-py (0.9.11+dfsg-2) unstable; urgency=medium + + * Team upload + * Deactivate randomly failing test (thanks for the patch to + Santiago Vila <sanvila@debian.org>) + Closes: #921979 + * Standards-Version: 4.3.0 + * Remove build time test results from binary package + + -- Andreas Tille <tille@debian.org> Mon, 18 Feb 2019 11:50:01 +0100 + +lmfit-py (0.9.11+dfsg-1) unstable; urgency=medium + + * Team upload. + * New upstream version + * New Build-Depends: python-asteval, python-uncertainties + * Remove ancient X-Python*-Version fields + * debhelper 11 + * Point Vcs fields to salsa.debian.org + * Standards-Version: 4.2.1 + * Versioned Build-Depends: python*-uncertainties (>= 3.0.2.github~) + * debian/copyright: do not mention local copy of uncertainties which + was removed any more + * Build-Depends: s/python-sphinx/python3-sphinx + * Remove duplicated from in description + * Drop unnecessary field Testsuite: autopkgtest + + -- Andreas Tille <tille@debian.org> Sat, 13 Oct 2018 21:02:35 +0200 + +lmfit-py (0.9.7+dfsg-1) unstable; urgency=medium + + * New upstream version 0.9.7+dfsg + * Standards-Verion bumped to 4.1.3 (extra -> optional) + * d/watch + - Updated to version 4 + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sun, 18 Feb 2018 10:55:39 +0100 + +lmfit-py (0.9.5+dfsg-2) unstable; urgency=medium + + * Standards-Verion bumped to 3.9.8 (nothing to do) + * Removed ipython(3)-notebook dependency (Closes: #840521) + * Removed matplotlib, tk, latex, pandas Build-Depends (useless) + * Simplified d/rules + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sat, 15 Oct 2016 09:01:40 +0200 + +lmfit-py (0.9.5+dfsg-1) unstable; urgency=medium + + * Imported Upstream version 0.9.5+dfsg + + -- Picca Frédéric-Emmanuel <picca@debian.org> Wed, 17 Aug 2016 08:29:47 +0200 + +lmfit-py (0.9.3+dfsg-1) unstable; urgency=medium + + * Imported Upstream version 0.9.3+dfsg + * fix the autopkgtest scripts + * Use cme to update the package + * Standards-Verion bumped to 3.9.7 (nothing to do) + + -- Picca Frédéric-Emmanuel <picca@debian.org> Thu, 31 Mar 2016 18:46:36 +0200 + +lmfit-py (0.9.2+dfsg-1) unstable; urgency=medium + + * Imported Upstream version 0.9.2+dfsg (Closes: #802085) + * Use the pypi redirector + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sat, 31 Oct 2015 08:20:22 +0100 + +lmfit-py (0.8.3+dfsg.1-1~exp1) experimental; urgency=medium + + * Imported Upstream version 0.8.3+dfsg.1 + * Run the test suite during the build + * Standards-Version bumped to 3.9.6 (no other changes required) + * Add the autopkgtest test suite. + + -- Picca Frédéric-Emmanuel <picca@debian.org> Tue, 30 Dec 2014 14:18:53 +0100 + +lmfit-py (0.8.0+dfsg.1-1) unstable; urgency=medium + + * Imported Upstream version 0.8.0+dfsg.1 + * Remove all patches (applyed upstream) + * Add the doc-base registration + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sun, 31 Aug 2014 10:56:03 +0200 + +lmfit-py (0.7.4+dfsg.2-1) unstable; urgency=low + + * Initial release (Closes: #741078) + + -- Picca Frédéric-Emmanuel <picca@debian.org> Fri, 07 Mar 2014 09:05:26 +0200 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..9f46275 --- /dev/null +++ b/debian/control @@ -0,0 +1,142 @@ +Source: lmfit-py +Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> +Uploaders: Picca Frédéric-Emmanuel <picca@debian.org>, + Michael Hudson-Doyle <mwhudson@debian.org> +Section: science +Priority: optional +Build-Depends: debhelper-compat (= 13), + dh-python, + pybuild-plugin-pyproject, + dh-sequence-numpy3, + dh-sequence-python3, + dh-sequence-sphinxdoc <!nodoc>, + python3-all, + python3-asteval (>= 0.9.28~), + python3-ipython <!nodoc>, + python3-numpy (>= 1.19~), + python3-pandas, + python3-pytest <!nocheck>, + python3-pytest-cov <!nocheck>, + python3-scipy (>= 1.6~), + python3-setuptools, + python3-setuptools-scm, + python3-sphinx <!nodoc>, + python3-sphinx-gallery <!nodoc>, + python3-sympy <!nodoc>, + python3-uncertainties +Standards-Version: 4.6.2 +Vcs-Browser: https://salsa.debian.org/science-team/lmfit-py +Vcs-Git: https://salsa.debian.org/science-team/lmfit-py.git +Homepage: https://lmfit.github.io/lmfit-py/ +Rules-Requires-Root: no + +Package: python3-lmfit +Architecture: all +Section: python +Depends: ${misc:Depends}, ${python3:Depends} +Suggests: python-lmfit-doc +Description: Least-Squares Minimization with Constraints (Python 3) + The lmfit Python package provides a simple, flexible interface to + non-linear optimization or curve fitting problems. The package + extends the optimization capabilities of scipy.optimize by replacing + floating pointing values for the variables to be optimized with + Parameter objects. These Parameters can be fixed or varied, have + upper and/or lower bounds placed on its value, or written as an + algebraic expression of other Parameters. + . + The principal advantage of using Parameters instead of simple + variables is that the objective function does not have to be + rewritten to reflect every change of what is varied in the fit, or + what relationships or constraints are placed on the Parameters. This + means a scientific programmer can write a general model that + encapsulates the phenomenon to be optimized, and then allow user of + that model to change what is varied and fixed, what range of values + is acceptable for Parameters, and what constraints are placed on the + model. The ease with which the model can be changed also allows one + to easily test the significance of certain Parameters in a fitting + model. + . + The lmfit package allows a choice of several optimization methods + available from scipy.optimize. The default, and by far best tested + optimization method used is the Levenberg-Marquardt algorithm from + MINPACK-1 as implemented in scipy.optimize.leastsq. This method + is by far the most tested and best support method in lmfit, and much + of this document assumes this algorithm is used unless explicitly + stated. An important point for many scientific analysis is that this + is only method that automatically estimates uncertainties and + correlations between fitted variables from the covariance matrix + calculated during the fit. + . + A few other optimization routines are also supported, including + Nelder-Mead simplex downhill, Powell's method, COBYLA, Sequential + Least Squares methods as implemented in scipy.optimize.fmin, and + several others from scipy.optimize. In their native form, some of + these methods setting allow upper or lower bounds on parameter + variables, or adding constraints on fitted variables. By using + Parameter objects, lmfit allows bounds and constraints for all of + these methods, and makes it easy to swap between methods without + hanging the objective function or set of Parameters. + . + Finally, because the approach derived from MINPACK-1 usin the + covariance matrix to determine uncertainties is sometimes questioned + (and sometimes rightly so), lmfit supports methods to do a brute + force search of the confidence intervals and correlations for sets of + parameters. + . + This is the Python 3 version of the package. + +Package: python-lmfit-doc +Architecture: all +Section: doc +Depends: libjs-mathjax, ${misc:Depends}, ${sphinxdoc:Depends} +Built-Using: ${sphinxdoc:Built-Using} +Multi-Arch: foreign +Description: Least-Squares Minimization with Constraints (Documentation) + The lmfit Python package provides a simple, flexible interface to + non-linear optimization or curve fitting problems. The package + extends the optimization capabilities of scipy.optimize by replacing + floating pointing values for the variables to be optimized with + Parameter objects. These Parameters can be fixed or varied, have + upper and/or lower bounds placed on its value, or written as an + algebraic expression of other Parameters. + . + The principal advantage of using Parameters instead of simple + variables is that the objective function does not have to be + rewritten to reflect every change of what is varied in the fit, or + what relationships or constraints are placed on the Parameters. This + means a scientific programmer can write a general model that + encapsulates the phenomenon to be optimized, and then allow user of + that model to change what is varied and fixed, what range of values + is acceptable for Parameters, and what constraints are placed on the + model. The ease with which the model can be changed also allows one + to easily test the significance of certain Parameters in a fitting + model. + . + The lmfit package allows a choice of several optimization methods + available from scipy.optimize. The default, and by far best tested + optimization method used is the Levenberg-Marquardt algorithm from + MINPACK-1 as implemented in scipy.optimize.leastsq. This method + is by far the most tested and best support method in lmfit, and much + of this document assumes this algorithm is used unless explicitly + stated. An important point for many scientific analysis is that this + is only method that automatically estimates uncertainties and + correlations between fitted variables from the covariance matrix + calculated during the fit. + . + A few other optimization routines are also supported, including + Nelder-Mead simplex downhill, Powell's method, COBYLA, Sequential + Least Squares methods as implemented in scipy.optimize.fmin, and + several others from scipy.optimize. In their native form, some of + these methods setting allow upper or lower bounds on parameter + variables, or adding constraints on fitted variables. By using + Parameter objects, lmfit allows bounds and constraints for all of + these methods, and makes it easy to swap between methods without + hanging the objective function or set of Parameters. + . + Finally, because the approach derived from MINPACK-1 usin the + covariance matrix to determine uncertainties is sometimes questioned + (and sometimes rightly so), lmfit supports methods to do a brute + force search of the confidence intervals and correlations for sets of + parameters. + . + This is the common documentation package. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..36eacdb --- /dev/null +++ b/debian/copyright @@ -0,0 +1,32 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: LM-Fit Development Team +Upstream-Contact: matt.newville@gmail.com +Source: http://lmfit.github.io/lmfit-py/ + +Files: * +Copyright: 2012-2014, 2019 Matthew Newville, The University of Chicago + Till Stensitzki, Freie Universitat Berlin +License: Expat + +Files: debian/* +Copyright: © 2014, Picca Frédéric-Emmanuel <picca@debian.org> +License: Expat + +License: Expat + Permission to use and redistribute the source code or binary forms of + this software and its documentation, with or without modification is + hereby granted provided that the above notice of copyright, these + terms of use, and the disclaimer of warranty below appear in the + source code and documentation, and that none of the names of above + institutions or authors appear in advertising or endorsement of works + derived from this software without specific prior written permission + from all parties. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, + EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF + MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND + NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS + BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN + ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN + CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THIS + SOFTWARE. diff --git a/debian/patches/0004-jupyter_sphinx-is-not-yet-working-on-Debian.patch b/debian/patches/0004-jupyter_sphinx-is-not-yet-working-on-Debian.patch new file mode 100644 index 0000000..02d7be7 --- /dev/null +++ b/debian/patches/0004-jupyter_sphinx-is-not-yet-working-on-Debian.patch @@ -0,0 +1,19 @@ +From: =?utf-8?q?Picca_Fr=C3=A9d=C3=A9ric-Emmanuel?= <picca@debian.org> +Date: Sat, 4 Sep 2021 10:25:10 +0200 +Subject: jupyter_sphinx is not yet working on Debian + +--- + doc/extensions.py | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +Index: lmfit-py/doc/sphinx/ext_mathjax.py +=================================================================== +--- lmfit-py.orig/doc/sphinx/ext_mathjax.py 2022-12-30 14:06:06.289278212 +0100 ++++ lmfit-py/doc/sphinx/ext_mathjax.py 2022-12-30 15:03:57.948518084 +0100 +@@ -7,5 +7,5 @@ + 'sphinx.ext.napoleon', + 'sphinx.ext.todo', + 'IPython.sphinxext.ipython_console_highlighting', +- 'jupyter_sphinx', ++# 'jupyter_sphinx', + 'sphinx_gallery.gen_gallery'] diff --git a/debian/patches/deactivate_test.patch b/debian/patches/deactivate_test.patch new file mode 100644 index 0000000..625550a --- /dev/null +++ b/debian/patches/deactivate_test.patch @@ -0,0 +1,22 @@ +From: Santiago Vila <sanvila@debian.org> +Date: Mon, 18 Nov 2019 14:17:10 +0100 +Subject: Since this bug randomly fails it is deactivated + +Last-Update: Sun, 10 Feb 2019 20:45:02 UTC +Bug-Debian: https://bugs.debian.org/921979 +--- + tests/test_covariance_matrix.py | 1 + + 1 file changed, 1 insertion(+) + +diff --git a/tests/test_covariance_matrix.py b/tests/test_covariance_matrix.py +index 55d1b85..97fcc33 100644 +--- a/tests/test_covariance_matrix.py ++++ b/tests/test_covariance_matrix.py +@@ -16,6 +16,7 @@ def check(para, real_val, sig=3): + + + def test_bounded_parameters(): ++ return + # create data to be fitted + np.random.seed(1) + x = np.linspace(0, 15, 301) diff --git a/debian/patches/series b/debian/patches/series new file mode 100644 index 0000000..9ae3e28 --- /dev/null +++ b/debian/patches/series @@ -0,0 +1,2 @@ +deactivate_test.patch +0004-jupyter_sphinx-is-not-yet-working-on-Debian.patch diff --git a/debian/python-lmfit-doc.doc-base b/debian/python-lmfit-doc.doc-base new file mode 100644 index 0000000..8ca28f3 --- /dev/null +++ b/debian/python-lmfit-doc.doc-base @@ -0,0 +1,9 @@ +Document: python-lmfit-doc +Title: lmfit module for python +Author: Matthew Newville +Abstract: Non-Linear Least-Squares Minimization and Curve-Fitting for Python +Section: Science/Data Analysis + +Format: HTML +Index: /usr/share/doc/python3-lmfit/html/index.html +Files: /usr/share/doc/python3-lmfit/html/*.html diff --git a/debian/python3-lmfit.remove b/debian/python3-lmfit.remove new file mode 100644 index 0000000..0ba55b6 --- /dev/null +++ b/debian/python3-lmfit.remove @@ -0,0 +1 @@ +python3.7/dist-packages/modelresult_1.sav diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..f05654b --- /dev/null +++ b/debian/rules @@ -0,0 +1,26 @@ +#!/usr/bin/make -f +# -*- makefile -*- + +## Uncomment this to turn on verbose mode. +export DH_VERBOSE=1 + +export PYBUILD_NAME=lmfit + +export PYBUILD_TEST_ARGS=-k 'not speed and not test_model_nan_policy' +export PYBUILD_BEFORE_TEST=cp -r NIST_STRD examples {build_dir} +export PYBUILD_AFTER_TEST=rm -fr {build_dir}/NIST_STRD {build_dir}/examples; find {build_dir} -name "*.sav" -delete + +%: + dh $@ --buildsystem=pybuild + +override_dh_installdocs-indep: + mv examples/example_emcee_Model_interface.py examples/nodoc_example_emcee_Model_interface.py + cp doc/sphinx/ext_mathjax.py doc/extensions.py + PYTHONPATH=. http_proxy='localhost' python3 -m sphinx -N -bhtml -D mathjax_path="/usr/share/javascript/mathjax/MathJax.js" doc/ .pybuild/html # HTML generator + rm doc/extensions.py + mv examples/nodoc_example_emcee_Model_interface.py examples/example_emcee_Model_interface.py + dh_installdocs -i + dh_installdocs .pybuild/html -p python-lmfit-doc --doc-main-package=python3-lmfit + +execute_before_dh_python3: + rm -rf debian/python3-lmfit/usr/lib/python3*/dist-packages/htmlcov debian/python3-lmfit/usr/lib/python3*/dist-packages/.coverage diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 0000000..11b44e5 --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,16 @@ +Test-Command: set -efu + ; cp -a NIST_STRD/ "$AUTOPKGTEST_TMP" + ; cp -a tests/ "$AUTOPKGTEST_TMP" + ; cp -a examples/ "$AUTOPKGTEST_TMP" + ; for py in $(py3versions -s 2>/dev/null) + ; do cd "$AUTOPKGTEST_TMP" + ; echo "Testing with $py:" + ; $py -m pytest -ra -k 'not speed and not test_model_nan_policy' + ; done +Depends: python3-all, + python3-lmfit, + python3-matplotlib, + python3-pandas, + python3-pytest, + python3-scipy, + python3-tk diff --git a/debian/upstream/metadata b/debian/upstream/metadata new file mode 100644 index 0000000..488b63d --- /dev/null +++ b/debian/upstream/metadata @@ -0,0 +1,4 @@ +Bug-Database: https://github.com/lmfit/lmfit-py/issues +Bug-Submit: https://github.com/lmfit/lmfit-py/issues/new +Repository: https://github.com/lmfit/lmfit-py.git +Repository-Browse: https://github.com/lmfit/lmfit-py diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..4087808 --- /dev/null +++ b/debian/watch @@ -0,0 +1,6 @@ +version=4 +opts=repacksuffix=+dfsg,\ +dversionmangle=s/.dfsg//,\ +uversionmangle=s/(rc|a|b|c)/~$1/ \ +https://pypi.python.org/packages/source/l/lmfit/ \ + lmfit-(.+)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz))) debian uupdate |