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Description: <short summary of the patch>
TODO: Put a short summary on the line above and replace this paragraph
with a longer explanation of this change. Complete the meta-information
with other relevant fields (see below for details). To make it easier, the
information below has been extracted from the changelog. Adjust it or drop
it.
.
ncbi-entrez-direct (10.5.20181204+ds-1) unstable; urgency=medium
.
* New upstream release.
* (debian/).gitignore: Update per GOPATH change.
* debian/control:
- Build-depend on dh-golang, golang-github-dataence-porter2-dev,
golang-github-fatih-color-dev, golang-github-klauspost-cpuid-dev,
golang-github-rainycape-unidecode-dev, and
golang-github-shirou-gopsutil-dev.
- Set Built-Using (with the help of dh-golang).
- Bump minimum Go version to 1.10 for strings.Builder.
- Depend on libxml-simple-perl.
- Repoint Vcs-{Browser,Git} at salsa.debian.org.
- Rules-Requires-Root: no (confirmed safe).
- Standards-Version: 4.2.1 (compliant at this point).
* debian/examples: Remove local storage/indexing scripts (considered
official enough for /usr/bin at this point), leaving only asp-* and
has-asp, which promote non-free software; add test-pubmed-index.
* debian/man/{archive-pubmed,download-pubmed,download-sequence,eblast,
fetch-pubmed,index-pubmed,intersect-uid-lists,(local-)phrase-search,
pm-clean,pm-erase,pm-invert,pm-log,pm-merge,pm-prepare,pm-promote,
pm-refresh,pm-repack,pm-stash,pm-uids,pm-verify,protein-neighbors,rchive,
stream-pubmed,transmute}.1: Document newly added tools.
* debian/man/{edirect,nquire,xtract}.1: Fix old documentation bugs.
* debian/man/{efetch,efilter,elink,entrez-phrase-search,ftp-cp,ftp-ls,
nquire,xtract}.1: Update for new release.
* debian/rules:
- Change (autopopulated) GOPATH to meet dh-golang's expectations.
- Belatedly run dh --with=golang to populate (misc:)Built-Using.
- Clean up remaining cruft from when Go support was optional.
- Pull github.com/surgebase/porter2 (aka gh.c/dataence/porter2),
github.com/fatih/color (along with its dependencies
github.com/mattn/go-{colorable,isatty}), github.com/klauspost/cpuid,
github.com/rainycape/unidecode (aliased, per rchive.go's expectations,
to github.com/fiam/gounidecode/unidecode), github.com/shirou/gopsutil
(along with its dependency golang.org/x/sys/unix), and our ersatz
github.com/pbnjay/memory into the path. (The rainycape version of
unidecode has the key advantages of being fresher and already packaged
for Debian.)
- Build rchive.go in addition to xtract.go; build both against a
common.go factored out of xtract.go.
- Install run-ncbi-converter (accidentally left off earlier).
- Flip Perl scripts back to running via /usr/bin/perl (from
/usr/bin/env perl).
- Enforce use of Go version 1.10 or newer, even if the default is older.
- Install local storage/indexing scripts to /usr/bin. (Closes: #901028.)
- Install new eblast wrapper (corresponding to new -blast mode) and
protein-neighbors script.
* debian/vendor/github.com/pbnjay/memory/memory.go: New wrapper around
github.com/shirou/gopsutil/mem, filling in for a different third-party
library that lacks a declared license.
Author: Aaron M. Ucko <ucko@debian.org>
Bug-Debian: https://bugs.debian.org/901028
---
The information above should follow the Patch Tagging Guidelines, please
checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here
are templates for supplementary fields that you might want to add:
Origin: <vendor|upstream|other>, <url of original patch>
Bug: <url in upstream bugtracker>
Bug-Debian: https://bugs.debian.org/<bugnumber>
Bug-Ubuntu: https://launchpad.net/bugs/<bugnumber>
Forwarded: <no|not-needed|url proving that it has been forwarded>
Reviewed-By: <name and email of someone who approved the patch>
Last-Update: 2018-12-06
--- /dev/null
+++ ncbi-entrez-direct-10.5.20181204+ds/.gitignore
@@ -0,0 +1,3 @@
+.pc
+bin
+obj-*/
|
