blob: 170da9be97e80858396da50bf332c0ad67918aff (
plain)
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|
#!/bin/sh
flag="none"
while [ $# -gt 0 ]
do
case "$1" in
-path )
shift
;;
-* )
exec >&2
echo "$0: Unrecognized option $1"
exit 1
;;
* )
break
;;
esac
done
if [ "$#" -gt 0 ]
then
argument="$1"
target=$(cd "$argument" && pwd)
target=${target%/}
case "$target" in
*/Archive ) ;;
* ) target=$target/Archive ;;
esac
else
if [ -z "${EDIRECT_PUBMED_MASTER}" ]
then
echo "Must supply path to archive files or set EDIRECT_PUBMED_MASTER environment variable"
exit 1
else
MASTER="${EDIRECT_PUBMED_MASTER}"
MASTER=${MASTER%/}
target="$MASTER/Archive"
fi
fi
target=${target%/}
HEAD=$(cat <<EOF
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE PubmedArticleSet PUBLIC "-//NLM//DTD PubMedArticle, 1st June 2018//EN" "https://dtd.nlm.nih.gov/ncbi/pubmed/out/pubmed_180601.dtd">
<PubmedArticleSet>
EOF
)
TAIL=$(cat <<EOF
</PubmedArticleSet>
EOF
)
echo "$HEAD" | gzip
rchive -stream "$target"
echo "$TAIL" | gzip
|
