d/copyright: Cover previously overlooked third-party code (all DFSG-free).

2 files changed, 167 insertions, 1 deletions

diff --git a/debian/changelog b/debian/changelog
index 98b5fb2f..cb71a8da 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -8,8 +8,10 @@ ncbi-tools6 (6.1.20170106+dfsg1-1) UNRELEASED; urgency=medium
     turned out to be non-free (with copyright held by Invitrogen
     Corporation, which requires a license for commercial use thereof.)
     (NOT RELEASED YET.)
+  * debian/copyright: Cover previously overlooked third-party code
+    (all DFSG-free).
 
- -- Aaron M. Ucko <ucko@debian.org>  Sun, 28 Jul 2019 21:30:56 -0400
+ -- Aaron M. Ucko <ucko@debian.org>  Sun, 28 Jul 2019 22:12:36 -0400
 
 ncbi-tools6 (6.1.20170106-7) unstable; urgency=medium
 
diff --git a/debian/copyright b/debian/copyright
index 4e3a3c8f..1b64306d 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -7,6 +7,51 @@ Files: *
 Copyright: 1996-2017 NCBI
 License: public_domain
 
+Files: algo/blast/core/boost_erf.c
+Copyright: 2006 John Maddock
+License: BSL-1.0
+
+Files: connect/mitsock/*
+Copyright: 1998-1999 The Massachusetts Institute of Technology
+License: MIT
+
+Files: connect/mitsock/OTErrno.c connect/mitsock/OTnetdb.c
+ connect/mitsock/sock_ext.h
+Copyright: ???? National Center for Supercomputing Applications
+License: NCSA
+
+Files: connect/mitsock/a_inet.h:
+Copyright: 1983 Regents of the University of California
+License: BSD-3-Clause
+
+Files: connect/mitsock/carbon_netdb.h:
+Copyright: 1980, 1983, 1988 Regents of the University of California
+License: BSD-3-Clause
+
+Files: connect/mitsock/neterrno.h:
+Copyright: 1982, 1986, 1989 Regents of the University of California
+License: BSD-3-Clause
+
+Files: connect/mitsock/neti_in.h:
+Copyright: 1982, 1986, 1990 Regents of the University of California
+License: BSD-3-Clause
+
+Files: connect/mitsock/s_types.h:
+Copyright: 1982 Regents of the University of California
+License: BSD-3-Clause
+
+Files: connect/parson.?
+Copyright: 2012-2016 Krzysztof Gabis
+License: Expat
+
+Files: corelib/regex.c
+Copyright: 1993 Free Software Foundation, Inc.
+License: GPL-2+
+
+Files: corelib/regex.h
+Copyright: 1985, 1989, 1990, 1991, 1992, 1993 Free Software Foundation, Inc.
+License: GPL-2+
+
 Files: debian/*
 Copyright: 1998-1999 Stephane Bortzmeyer <bortzmeyer@pasteur.fr>
            2001      Dr. Guenter Bechly <gbechly@debian.org>
@@ -62,3 +107,122 @@ License: public_domain
  purpose.
  .
  Please cite the author in any work or product based on this material.
+
+License: BSL-1.0
+ Permission is hereby granted, free of charge, to any person or organization
+ obtaining a copy of the software and accompanying documentation covered by
+ this license (the "Software") to use, reproduce, display, distribute,
+ execute, and transmit the Software, and to prepare derivative works of the
+ Software, and to permit third-parties to whom the Software is furnished to
+ do so, all subject to the following:
+ .
+ The copyright notices in the Software and this entire statement, including
+ the above license grant, this restriction and the following disclaimer,
+ must be included in all copies of the Software, in whole or in part, and
+ all derivative works of the Software, unless such copies or derivative
+ works are solely in the form of machine-executable object code generated by
+ a source language processor.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
+ SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
+ FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
+ ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+ DEALINGS IN THE SOFTWARE.
+
+License: Expat
+ Permission is hereby granted, free of charge, to any person obtaining a copy
+ of this software and associated documentation files (the "Software"), to
+ deal in the Software without restriction, including without limitation the
+ rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
+ sell copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
+ IN THE SOFTWARE.
+
+License: MIT
+ Permission to use, copy, modify, and distribute this software and its
+ documentation for any purpose and without fee is hereby granted,
+ provided that the above copyright notice appear in all copies and that
+ both that copyright notice and this permission notice appear in
+ supporting documentation, and that the name of M.I.T. not be used in
+ advertising or publicity pertaining to distribution of the software
+ without specific, written prior permission.  Furthermore if you modify
+ this software you must label your software as modified software and not
+ distribute it in such a fashion that it might be confused with the
+ original MIT software. M.I.T. makes no representations about the
+ suitability of this software for any purpose.  It is provided "as is"
+ without express or implied warranty.
+ . 
+ THIS SOFTWARE IS PROVIDED ``AS IS'' AND WITHOUT ANY EXPRESS OR IMPLIED
+ WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
+ MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.
+ .
+ Individual source code files are copyright MIT, Cygnus Support,
+ OpenVision, Oracle, Sun Soft, FundsXpress, and others.
+ .
+ Project Athena, Athena, Athena MUSE, Discuss, Hesiod, Kerberos, Moira,
+ and Zephyr are trademarks of the Massachusetts Institute of Technology
+ (MIT).  No commercial use of these trademarks may be made without prior
+ written permission of MIT.
+ .
+ "Commercial use" means use of a name in a product or other for-profit
+ manner.  It does NOT prevent a commercial firm from referring to the MIT
+ trademarks in order to convey information (although in doing so,
+ recognition of their trademark status should be given).
+
+License: NCSA
+ This source file is placed in the public domian.
+ Any resemblance to NCSA Telnet, living or dead, is purely coincidental.
+ .
+      National Center for Supercomputing Applications
+      152 Computing Applications Building
+      605 E. Springfield Ave.
+      Champaign, IL  61820
+
+License: BSD-3-Clause
+ Redistribution and use in source and binary forms are permitted
+ provided that: (1) source distributions retain this entire copyright
+ notice and comment, and (2) distributions including binaries display
+ the following acknowledgement:  ``This product includes software
+ developed by the University of California, Berkeley and its contributors''
+ in the documentation or other materials provided with the distribution
+ and in all advertising materials mentioning features or use of this
+ software. Neither the name of the University nor the names of its
+ contributors may be used to endorse or promote products derived
+ from this software without specific prior written permission.
+ THIS SOFTWARE IS PROVIDED ``AS IS'' AND WITHOUT ANY EXPRESS OR
+ IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
+
+License: GPL-2+
+ This program is free software; you can redistribute it
+ and/or modify it under the terms of the GNU General Public
+ License as published by the Free Software Foundation; either
+ version 2 of the License, or (at your option) any later
+ version.
+ .
+ This program is distributed in the hope that it will be
+ useful, but WITHOUT ANY WARRANTY; without even the implied
+ warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE.  See the GNU General Public License for more
+ details.
+ .
+ You should have received a copy of the GNU General Public
+ License along with this package; if not, write to the Free
+ Software Foundation, Inc., 51 Franklin St, Fifth Floor,
+ Boston, MA  02110-1301 USA
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 2 can be found in the file
+ `/usr/share/common-licenses/GPL-2'.