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| author | Aaron M. Ucko <ucko@debian.org> | 2007-09-05 15:33:43 +0000 |
|---|---|---|
| committer | Aaron M. Ucko <ucko@debian.org> | 2007-09-05 15:33:43 +0000 |
| commit | 7647e504b18f91edcedba85e7a6ef772b2a0f48b (patch) | |
| tree | 6152f91efe8f30174ce9d51525a458b85335f12b /doc/man/formatdb.1 | |
| parent | b0629a94e882461a9d6cab18807c5f96501cf38f (diff) | |
[svn-upgrade] Integrating new upstream version, ncbi-tools6 (6.1.20070822)
Diffstat (limited to 'doc/man/formatdb.1')
| -rw-r--r-- | doc/man/formatdb.1 | 12 |
1 files changed, 10 insertions, 2 deletions
diff --git a/doc/man/formatdb.1 b/doc/man/formatdb.1 index 1f9cdaa6..4c5c04bd 100644 --- a/doc/man/formatdb.1 +++ b/doc/man/formatdb.1 @@ -1,4 +1,4 @@ -.TH FORMATDB 1 2002-08-30 NCBI "NCBI Tools User's Manual" +.TH FORMATDB 1 2005-11-04 NCBI "NCBI Tools User's Manual" .SH NAME formatdb \- format protein or nucleotide databases for BLAST .SH SYNOPSIS @@ -7,6 +7,7 @@ formatdb \- format protein or nucleotide databases for BLAST [\|\fB\-B\fP\ \fIfilename\fP\|] [\|\fB\-F\fP\ \fIfilename\fP\|] [\|\fB\-L\fP\ \fIfilename\fP\|] +[\|\fB\-T\fP\ \fIfilename\fP\|] [\|\fB\-V\fP\|] [\|\fB\-a\fP\|] [\|\fB\-b\fP\|] @@ -51,6 +52,10 @@ Gifile (file containing list of gi's) for use with \fB\-B\fP or \fB\-L\fP Create an alias file named \fIfilename\fP, limiting the sequences searched to those specified by \fB\-F\fP. .TP +\fB\-T\fP\ \fIfilename\fP +Set the taxonomy IDs in ASN.1 deflines according to the table in +\fIfilename\fP. +.TP \fB\-V\fP Verbose: check for non-unique string ids in the database .TP @@ -101,4 +106,7 @@ extension 'nal' or 'pal'. The National Center for Biotechnology Information. .SH SEE ALSO .BR blast (1), -formatdb.txt +.BR copymat (1), +.BR formatrpsdb (1), +.BR makemat (1), +formatdb.html. |