diff options
| author | Aaron M. Ucko <ucko@debian.org> | 2005-03-24 18:46:06 +0000 |
|---|---|---|
| committer | Aaron M. Ucko <ucko@debian.org> | 2005-03-24 18:46:06 +0000 |
| commit | 63b21a5f6060202b6d5c888d203e78ba871abcc2 (patch) | |
| tree | 03fb3548fb6902e89097d17630f910e220b420a8 /make | |
| parent | d5cd243f986e2366bd1dfe5f923d2ce7e1002f93 (diff) | |
Load ncbi (6.1.20041020) into ncbi-tools6/branches/upstream/current.
Diffstat (limited to 'make')
| -rwxr-xr-x | make/makeApps.met | 53 | ||||
| -rwxr-xr-x | make/makeLibs.met | 2 | ||||
| -rw-r--r-- | make/makeall.unx | 30 | ||||
| -rwxr-xr-x | make/makeallchives | 48 | ||||
| -rw-r--r-- | make/makedemo.unx | 39 | ||||
| -rwxr-xr-x | make/makedis.csh | 21 | ||||
| -rw-r--r-- | make/makenet.unx | 22 | ||||
| -rw-r--r-- | make/msvc_prj/algo/blast/api/blastapi.dsp | 28 | ||||
| -rwxr-xr-x | make/msvc_prj/all2one.sh | 457 | ||||
| -rw-r--r-- | make/msvc_prj/demo/asn2all/demo_asn2all.dsp | 75 | ||||
| -rw-r--r-- | make/msvc_prj/demo/asn2fsa/demo_asn2fsa.dsp | 75 | ||||
| -rw-r--r-- | make/msvc_prj/demo/asn2idx/demo_asn2idx.dsp | 81 | ||||
| -rw-r--r-- | make/msvc_prj/demo/formatrpsdb/demo_formatrpsdb.dsp | 66 | ||||
| -rw-r--r-- | make/msvc_prj/demo/tbl2asn/demo_tbl2asn.dsp | 14 | ||||
| -rw-r--r-- | make/msvc_prj/install.sh | 8 | ||||
| -rw-r--r-- | make/msvc_prj/ncbi.dsw | 153 | ||||
| -rw-r--r-- | make/msvc_prj/object/ncbiobj.dsp | 16 | ||||
| -rwxr-xr-x | make/msvc_prj/one2all.sh | 762 | ||||
| -rwxr-xr-x | make/msvc_prj/one2all_r.sh | 60 | ||||
| -rwxr-xr-x | make/msvc_prj/one2one.sh | 107 | ||||
| -rw-r--r-- | make/msvc_prj/tools/ncbitool.dsp | 8 | ||||
| -rw-r--r-- | make/packApps.met | 20 | ||||
| -rw-r--r-- | make/readme.unx | 8 | ||||
| -rw-r--r-- | make/xCode/NCBI.xcode/project.pbxproj | 11842 |
24 files changed, 13902 insertions, 93 deletions
diff --git a/make/makeApps.met b/make/makeApps.met index 131c1935..093e0db7 100755 --- a/make/makeApps.met +++ b/make/makeApps.met @@ -106,7 +106,8 @@ on SetProjectData() set myFeatures to {"sockets"} set mySettings to {prefixFile:"", creator:"ENTZ", ppcProject:{}} set myRsrcs to {"entrez.r", "Info.plc"} - set myLibs to {"ncbi", "ncbiconn", "ncbiobj", "ncbimmdb", "ncbitool", "vibrant", "ncbidesk"} + set myLibs to {"ncbi", "ncbiconn", "ncbiobj", "ncbimmdb", "ncbitool", "vibrant", "ncbidesk",  + "ncbiblast", "ncbiblastapi"} set myFiles to  {{projPath:"demo:", fileList:{"entrez2.c"}}} set entrez2Data to  @@ -137,6 +138,30 @@ on SetProjectData() {name:myName, features:myFeatures, settings:mySettings, rsrcs:myRsrcs, projLibs: myLibs, fileData:myFiles} + -- Megablast + set myName to "megablast" + set myFeatures to {"sockets"} + set mySettings to {prefixFile:"", ppcProject:{}} + set myRsrcs to {"ncbilogo.r", "Info.plc"} + set myLibs to {"ncbi", "ncbiconn", "ncbiobj", "vibrant", "ncbitool", "ncbiblast", "ncbiblastapi"} + set myFiles to  + {{projPath:"demo:", fileList:{"megablast.c"}}} + set megablastData to  + {name:myName, features:myFeatures, settings:mySettings, rsrcs:myRsrcs, projLibs: + myLibs, fileData:myFiles} + + -- Copymat + set myName to "copymat" + set myFeatures to {"sockets"} + set mySettings to {prefixFile:"", ppcProject:{}} + set myRsrcs to {"ncbilogo.r", "Info.plc"} + set myLibs to {"ncbi", "ncbiconn", "ncbiobj", "vibrant", "ncbitool", "ncbiblast", "ncbiblastapi"} + set myFiles to  + {{projPath:"demo:", fileList:{"copymat.c"}}} + set copymatData to  + {name:myName, features:myFeatures, settings:mySettings, rsrcs:myRsrcs, projLibs: + myLibs, fileData:myFiles} + -- Impala set impalaData to my SimpleProjectData("impala", {}) set item 1 of fileList of item 1 of fileData of impalaData to "profiles.c" @@ -153,12 +178,25 @@ on SetProjectData() {name:myName, features:myFeatures, settings:mySettings, rsrcs:myRsrcs, projLibs: myLibs, fileData:myFiles} + -- asn2all + set myName to "asn2all" + set myFeatures to {"sockets"} + set mySettings to {prefixFile:"", ppcProject:{}} + set myRsrcs to {"ncbilogo.r", "Info.plc"} + set myLibs to {"ncbi", "ncbiconn", "ncbiobj", "vibrant", "ncbitool", "netcli", "ncbiid1"} + set myFiles to  + {{projPath:"demo:", fileList:{"asn2all.c"}}} + set asn2allData to  + {name:myName, features:myFeatures, settings:mySettings, rsrcs:myRsrcs, projLibs: + myLibs, fileData:myFiles} + -- Spidey set myName to "spidey" set myFeatures to {"sockets"} set mySettings to {prefixFile:"", ppcProject:{}} set myRsrcs to {"ncbilogo.r", "Info.plc"} - set myLibs to {"ncbi", "ncbiconn", "ncbiobj", "vibrant", "ncbitool", "netcli", "ncbiid1"} + set myLibs to {"ncbi", "ncbiconn", "ncbiobj", "vibrant", "ncbitool", "netcli", "ncbiid1",  + "ncbiblast", "ncbiblastapi"} set myFiles to  {{projPath:"demo:", fileList:{"spideymain.c"}}} set spideyData to  @@ -170,9 +208,10 @@ on SetProjectData() AddProject(sequinData) AddProject(entrez2Data) - AddSimpleProject("tbl2asn", {}) + AddSimpleProject("tbl2asn", {"sockets"}) AddSimpleProject("asn2gb", {"sockets"}) AddProject(asn2fsaData) + AddProject(asn2allData) AddProject(spideyData) -- AddProject(entrezData) @@ -187,11 +226,11 @@ on SetProjectData() AddSimpleProject("blastpgp", {}) AddProject(blastcl3Data) - AddSimpleProject("megablast", {}) + AddProject(megablastData) AddSimpleProject("blastclust", {}) AddSimpleProject("rpsblast", {}) AddSimpleProject("seedtop", {}) - AddSimpleProject("copymat", {}) + AddProject(copymatData) AddSimpleProject("makemat", {}) AddProject(impalaData) @@ -487,8 +526,10 @@ on SetupTarget(proj, targetIndex) if not targetDebug and not targetProfile then if targetAPI is "Mach-O" then set targetFilename to projName & "OSX" -- Mach adds OSX on the end. + else if targetAPI is "Carbon" then + set targetFilename to projName & "OS9" -- Carbon adds OS9 on the end. else - set targetFilename to projName -- Carbon & Windows have same name as project. + set targetFilename to projName -- Windows have same name as project. end if else set targetFilename to projName & fileNameSuffix diff --git a/make/makeLibs.met b/make/makeLibs.met index 580d9e1f..d5433848 100755 --- a/make/makeLibs.met +++ b/make/makeLibs.met @@ -193,7 +193,7 @@ on SetProjectData() AddSimpleProjectExceptFiles("ncbiid1", {}, "network:id1arch", {"idfetch.c"}) - AddSimpleProject("ncbiid2", {}, "network:id2arch") + -- AddSimpleProject("ncbiid2", {}, "network:id2arch") AddSimpleProjectExceptFiles("ncbimla", {}, "network:medarch:client", {"sybmed.c"}) diff --git a/make/makeall.unx b/make/makeall.unx index fc28edf6..e40a8dda 100644 --- a/make/makeall.unx +++ b/make/makeall.unx @@ -1,6 +1,6 @@ # makefile for asntool and ncbi core routines, # -# $Id: makeall.unx,v 6.240 2004/06/08 15:44:54 dondosha Exp $ +# $Id: makeall.unx,v 6.247 2004/10/06 19:05:10 dondosha Exp $ # # cdromlib data access functions, vibrant, and entrez # SunOS with unbundled ANSI compiler [ make LCL=acc RAN=ranlib CC=acc ] @@ -179,7 +179,7 @@ SRC1 = ncbibs.c wwwutils.c ncbierr.c ncbienv.c ncbifile.c \ ncbi_memory_connector.c $(NCBI_LBSM_SRC) \ ncbi_host_info.c ncbi_server_info.c ncbi_service.c \ ncbi_service_connector.c ncbi_dispd.c \ - ncbi_socket_connector.c urlquery.c lbapi.c binary.c \ + ncbi_socket_connector.c urlquery.c binary.c \ ncbi_sendmail.c asn_connection.c raw_scoremat.c \ drwnflpt.c drwnfspc.c drwnmfls.c @@ -188,7 +188,7 @@ SRC2 = objacces.c objalign.c objall.c objbibli.c \ objres.c objseq.c objblock.c objcode.c objsset.c \ objsub.c objprt.c objfdef.c objalignloc.c \ objpubme.c objmdrs.c objproj.c objgbseq.c objtseq.c \ - objinsdseq.c objent2.c ent2api.c pmfapi.c \ + objinsdseq.c objent2.c ent2api.c pmfapi.c objtax3.c tax3api.c \ qblastapi.c vecscnapi.c objmim.c mimapi.c cddapi.c seqport.c \ sequtil.c prtutil.c simple.c tofasta.c tofile.c tomedlin.c \ valid.c alignmgr.c aliparse.c aliread.c alignval.c sqnutil1.c sqnutil2.c sqnutil3.c \ @@ -256,7 +256,7 @@ SRC23 = csim.c db_slist.c dust.c falign.c g_any.c sim2.c sim3.c sim4.c \ urkfltr.c urkdust.c urksigu.c seg.c urkbias.c urkcnsrt.c urktree.c \ pseed3.c pattern1.c impatool.c posit2.c mbalign.c \ vecscrn.c mblast.c rpsutil.c kappa.c xmlblast.c bxmlobj.c objscoremat.c \ - dotseq.c spidey.c motif.c + dotseq.c spidey.c motif.c blfmtutl.c SRC28 = gdfontg.c gdfontmb.c gdfontt.c pictogif.c \ gdfontl.c gdfonts.c ncbidrwg.c drawing.c mapping.c picture.c ncbimain.c @@ -289,9 +289,9 @@ SRC60 = aa_ungapped.c blast_diagnostics.c blast_dust.c blast_engine.c \ lookup_util.c blast_encoding.c blast_psi.c blast_psi_priv.c blast_kappa.c \ matrix_freq_ratios.c blast_hspstream.c -SRC61 = blast_format.c blast_input.c blast_returns.c blast_seq.c \ - blast_seqalign.c blast_tabular.c hspstream_queue.c multiseq_src.c \ - seqsrc_readdb.c twoseq_api.c +SRC61 = blast_format.c blast_input.c blast_mtlock.c blast_prelim.c \ + blast_returns.c blast_seq.c blast_seqalign.c blast_tabular.c \ + blast_tback.c hspstream_queue.c seqsrc_multiseq.c seqsrc_readdb.c twoseq_api.c # objects needed for versions of asntool and entrez @@ -311,7 +311,7 @@ OBJ1 = ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o \ ncbi_memory_connector.o $(NCBI_LBSM_OBJ) \ ncbi_host_info.o ncbi_server_info.o ncbi_service.o \ ncbi_service_connector.o ncbi_dispd.o \ - ncbi_socket_connector.o urlquery.o lbapi.o binary.o \ + ncbi_socket_connector.o urlquery.o binary.o \ ncbi_sendmail.o asn_connection.o raw_scoremat.o \ drwnflpt.o drwnfspc.o drwnmfls.o @@ -320,7 +320,7 @@ OBJ2 = objacces.o objalign.o objall.o objbibli.o \ objres.o objseq.o objblock.o objcode.o objsset.o \ objsub.o objprt.o objfdef.o objalignloc.o \ objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o \ - objinsdseq.o objent2.o ent2api.o pmfapi.o \ + objinsdseq.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o \ qblastapi.o vecscnapi.o objmim.o mimapi.o cddapi.o seqport.o \ sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o \ valid.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o \ @@ -400,7 +400,7 @@ OBJ23 = csim.o db_slist.o dust.o falign.o g_any.o sim2.o sim3.o sim4.o \ urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o \ pseed3.o pattern1.o impatool.o posit2.o mbalign.o \ vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o objscoremat.o \ - dotseq.o spidey.o motif.o + dotseq.o spidey.o motif.o blfmtutl.o OBJ28 = gdfontg.o gdfontmb.o gdfontt.o pictogif.o \ gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o @@ -438,9 +438,9 @@ OBJ60 = aa_ungapped.o blast_diagnostics.o blast_dust.o blast_engine.o blast_exte lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o \ matrix_freq_ratios.o blast_hspstream.o -OBJ61 = blast_input.o blast_format.o blast_returns.o blast_seq.o \ - blast_seqalign.o blast_tabular.o hspstream_queue.o multiseq_src.o \ - seqsrc_readdb.o twoseq_api.o +OBJ61 = blast_input.o blast_format.o blast_mtlock.o blast_prelim.o \ + blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o \ + blast_tback.o hspstream_queue.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o # NOTE: if you enter an object file to an OBJxx greater than 30, you have to explicitly @@ -492,8 +492,6 @@ clean : ## Special case ## -lbapi.o : lbapi.c - $(CC) $(CFLAGS) $(IN_HOUSE_CFLAGS) lbapi.c ncbithrs.o: ncbithrs.c $(CC) -DNCBI_NOTHREADS_AVAIL $(CFLAGS) ncbithrs.c ncbidrwg.o: ncbidrwg.c @@ -691,8 +689,6 @@ copy : -mkdir ../include/ctools -chmod ug+rw,o+r ../include/ctools cp -fp ../ctools/*.h ../include/ctools - $(SRCCOPY) ../connect/lbapi/*.c . - $(SRCCOPY) ../connect/lbapi/*.h ../include $(SRCCOPY) ../object/*.c . $(SRCCOPY) ../object/*.h ../include $(SRCCOPY) ../access/*.c . diff --git a/make/makeallchives b/make/makeallchives index dd09d4fa..5e3fe7e7 100755 --- a/make/makeallchives +++ b/make/makeallchives @@ -1,6 +1,6 @@ #!/bin/sh # -# $Id: makeallchives,v 1.74 2004/06/16 19:17:52 beloslyu Exp $ +# $Id: makeallchives,v 1.77 2004/08/11 21:15:49 beloslyu Exp $ # # # Creates all archives from a directory above 'ncbi' @@ -43,7 +43,7 @@ test -d archive && rm -rf archive #make sure we have timestamp file test -f ncbi/VERSION || date > ncbi/VERSION -for i in sequin entrez fa2htgs blast netblast asn2xml +for i in sequin entrez fa2htgs netblast asn2xml do f="" mkdir -p archive/$i/data @@ -90,10 +90,6 @@ EOF fa2htgs) f="fa2htgs" ;; - blast) - f="blastall blastpgp seedtop formatdb fastacmd copymat makemat impala megablast blastclust rpsblast bl2seq ../doc/blast/bl2seq.html ../doc/blast/blast.html ../doc/blast/blastall.html ../doc/blast/blastclust.html ../doc/blast/blastdb.html ../doc/blast/blastftp.html ../doc/blast/blastpgp.html ../doc/blast/fastacmd.html ../doc/blast/filter.html ../doc/blast/formatdb.html ../doc/blast/impala.html ../doc/blast/index.html ../doc/blast/megablast.html ../doc/blast/netblast.html ../doc/blast/rpsblast.html" - rm -f archive/blast/data/sequin.hlp - ;; netblast) f="blastcl3 ../doc/firewall.html ../doc/blast/netblast.html" ;; @@ -245,13 +241,12 @@ EOF cd .. done -#for A in sequin entrez fa2htgs cn3d blast netblast asn2xml -for A in sequin entrez fa2htgs blast netblast asn2xml +for A in sequin entrez fa2htgs netblast asn2xml do cd $A || continue tar cf ../$A.$platform.tar . rm -f ../$A.$platform.tar.Z - compress < ../$A.$platform.tar > ../$A.$platform.tar.Z + #compress < ../$A.$platform.tar > ../$A.$platform.tar.Z gzip < ../$A.$platform.tar > ../$A.$platform.tar.gz 2>/dev/null if [ $? != 0 ] ; then /usr/ncbi/bin/gzip < ../$A.$platform.tar > ../$A.$platform.tar.gz 2>/dev/null @@ -263,9 +258,40 @@ do rm -fr $A done -# build wwwblast archive +echo Building blast archive... + +BLASTDIR=blast-`cat ../ncbi/demo/.BLAST_VERSION` + +mkdir $BLASTDIR +mkdir $BLASTDIR/bin +mkdir $BLASTDIR/data +mkdir $BLASTDIR/doc + +for file in blastall blastpgp seedtop formatdb formatrpsdb fastacmd copymat makemat impala megablast blastclust rpsblast bl2seq +do +cp ../ncbi/build/$file $BLASTDIR/bin +done + +for file in $datafiles +do +cp ../ncbi/data/$file $BLASTDIR/data +done + +for file in bl2seq.html blast.html blastall.html blastclust.html blastdb.html blastftp.html blastpgp.html fastacmd.html filter.html formatdb.html formatrpsdb.html history.html impala.html index.html megablast.html netblast.html rpsblast.html +do +cp ../ncbi/doc/blast/$file $BLASTDIR/doc +done + +cp ../ncbi/VERSION $BLASTDIR + +tar -cpf blast.$platform.tar $BLASTDIR +gzip blast.$platform.tar +rm -rf $BLASTDIR + +# end build blast archive + -# cd archive && cvs export -d blast -r HEAD distrib/network/wwwblast && cd .. +echo Building wwwblast archive... mkdir blast diff --git a/make/makedemo.unx b/make/makedemo.unx index be25b44b..66b0b812 100644 --- a/make/makedemo.unx +++ b/make/makedemo.unx @@ -1,6 +1,6 @@ # makefile for demo programs # -# $Id: makedemo.unx,v 6.69 2004/05/13 18:23:15 coulouri Exp $ +# $Id: makedemo.unx,v 6.80 2004/10/02 21:18:27 kans Exp $ # # Sun with unbundled ANSI compiler [ make CC=acc ] # Sun with Gnu C [ make CC=gcc ] @@ -96,20 +96,21 @@ EXE1 = testcore makeset \ getmesh indexpub getpub testobj seqtest \ dosimple asn2ff getseq getfeat checksub asndhuff \ entrcmd errhdr cdscan findspl \ - ncbisort fa2htgs fastacmd formatdb blast blastall blastpgp \ - testval seedtop makemat copymat impala \ - megablast vecscreen gil2bin tbl2asn blastclust rpsblast \ - asn2xml debruijn \ + ncbisort fa2htgs fastacmd formatdb formatrpsdb blast \ + blastall blastpgp testval seedtop makemat copymat impala \ + megablast vecscreen gil2bin blastclust rpsblast \ + asn2xml debruijn asn2idx sortbyquote \ test_regexp demo_regexp demo_regexp_grep SRC1 = testcore.c makeset.c \ getmesh.c indexpub.c getpub.c testobj.c seqtest.c dosimple.c asn2ff.c \ getseq.c getfeat.c checksub.c asndhuff.c \ entrcmd.c errhdr.c cdscan.c findspl.c \ - ncbisort.c fa2htgs.c fastacmd.c formatdb.c blast_driver.c blastall.c \ - blastpgp.c testval.c seedtop.c makemat.c copymat.c profiles.c \ - megablast.c vecscreen.c gil2bin.c tbl2asn.c blastclust.c rpsblast.c \ - asn2xml.c debruijn.c \ + ncbisort.c fa2htgs.c fastacmd.c formatdb.c formatrpsdb.c \ + blast_driver.c blastall.c blastpgp.c testval.c seedtop.c \ + makemat.c copymat.c profiles.c \ + megablast.c vecscreen.c gil2bin.c blastclust.c rpsblast.c \ + asn2xml.c debruijn.c asn2idx.c sortbyquote.c \ pcretest.c pcredemo.c pcregrep.c INTERNAL = testgen @@ -271,10 +272,15 @@ fastacmd : fastacmd.c formatdb : formatdb.c $(CC) -o formatdb $(LDFLAGS) formatdb.c $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) +# formatrpsdb + +formatrpsdb : formatrpsdb.c + $(CC) -o formatrpsdb $(LDFLAGS) formatrpsdb.c $(LIB61) $(LIB23) $(LIB60) $(LIB2) $(LIB1) $(OTHERLIBS) + # blast (reincarnation of blastall from algo/blast sources) blast : blast_driver.c - $(CC) -o blast $(LDFLAGS) blast_driver.c $(LIB61) $(LIB60) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) + $(CC) -o blast $(LDFLAGS) blast_driver.c $(THREAD_OBJ) $(LIB61) $(LIB60) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) debruijn : debruijn.c $(CC) -o debruijn $(LDFLAGS) debruijn.c $(LIB60) $(LIB1) $(OTHERLIBS) @@ -326,7 +332,7 @@ packfilt : packfilt.c # megablast megablast : megablast.c $(THREAD_OBJ) - $(CC) -o megablast $(LDFLAGS) megablast.c $(THREAD_OBJ) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) + $(CC) -o megablast $(LDFLAGS) megablast.c $(THREAD_OBJ) $(LIB61) $(LIB60) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) # vecscreen @@ -338,10 +344,15 @@ vecscreen : vecscreen.c $(THREAD_OBJ) gil2bin : gil2bin.c $(CC) -o gil2bin $(LDFLAGS) gil2bin.c $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) -# tbl2asn +# asn2idx + +asn2idx : asn2idx.c + $(CC) -o asn2idx $(LDFLAGS) asn2idx.c $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) + +# sortbyquote -tbl2asn : tbl2asn.c - $(CC) -o tbl2asn $(LDFLAGS) tbl2asn.c $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) +sortbyquote : sortbyquote.c + $(CC) -o sortbyquote $(LDFLAGS) sortbyquote.c $(LIB2) $(LIB1) $(OTHERLIBS) # blastclust diff --git a/make/makedis.csh b/make/makedis.csh index 98f5648e..70000e7c 100755 --- a/make/makedis.csh +++ b/make/makedis.csh @@ -1,6 +1,6 @@ #!/bin/csh -f # -# $Id: makedis.csh,v 1.100 2004/05/13 17:13:54 ucko Exp $ +# $Id: makedis.csh,v 1.106 2004/09/21 17:07:02 beloslyu Exp $ # ## PUBLIC DOMAIN NOTICE # National Center for Biotechnology Information @@ -353,7 +353,7 @@ if ( "$HAVE_MOTIF" == 1 ) then OGLLIBS=\"$OGL_LIBS $PNG_LIBS\" \ VIBFLAG=\"$NCBI_VIBFLAG\" \ VIB=\"Psequin Nentrez udv ddv blastcl3 \ - idfetch bl2seq asn2gb entrez2 gbseqget \ + idfetch bl2seq asn2gb tbl2asn entrez2 gbseqget \ $WWWBLAST $OGL_TARGETS\") else if ( "$HAVE_MAC" == 1 ) then set ALL_VIB=(LIB30=libncbicn3d.a \ @@ -376,7 +376,7 @@ else if ( "$HAVE_MAC" == 1 ) then VIBFLAG=\"$NCBI_VIBFLAG\" \ VIB_POST_LINK=\"/Developer/Tools/Rez -t APPL ../link/macmet/Carbon.r -o\" \ VIB=\"Psequin udv ddv blastcl3 \ - idfetch bl2seq asn2gb entrez2 gbseqget $WWWBLAST \") + idfetch bl2seq asn2gb tbl2asn entrez2 gbseqget $WWWBLAST \") else # no Motif, build only ascii-based applications set OGL_NCBI_LIBS="" set OGL_INCLUDE="" @@ -385,7 +385,7 @@ else # no Motif, build only ascii-based applications set ALL_VIB=() set DEMO_VIB=() - set NET_VIB=(VIB=\"blastcl3 idfetch bl2seq asn2gb $NONVIBWWWBLAST \") + set NET_VIB=(VIB=\"blastcl3 idfetch bl2seq asn2gb tbl2asn $NONVIBWWWBLAST \") endif set CMD='make $MFLG \ @@ -423,7 +423,7 @@ set demo_stat = $status # Might repeat what is done above on some platforms. # -set mtapps = "blastall blastpgp seedtop megablast rpsblast blastclust" +set mtapps = "blast blastall blastpgp seedtop megablast rpsblast blastclust" rm -f $mtapps @@ -438,12 +438,13 @@ eval echo $CMD | sh set threaded_demo_stat = $status -if ("$?THREAD_OTHERLIBS" == "1") then +if ("$?NCBI_MT_OTHERLIBS" == "1") then set CMD='make $MFLG -f makenet.unx \ CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \ LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \ AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \ - THREAD_OTHERLIBS=\"$NCBI_THREAD_OTHERLIBS\" \ + THREAD_OBJ=$NCBI_THREAD_OBJ \ + THREAD_OTHERLIBS=\"$NCBI_MT_OTHERLIBS\" \ NETENTREZVERSION=\"$NETENTREZVERSION\" $NET_VIB' else set CMD='make $MFLG -f makenet.unx \ @@ -476,11 +477,11 @@ else echo "The version number of each individual application" >> ../VERSION echo "may be found in the appropriate documentation files in ./ncbi/doc/" >> ../VERSION echo "uname -a ouput is: `uname -a`" >> ../VERSION - foreach i ( Nentrez Psequin asn2ff asn2xml asn2gb asndhuff asntool bl2seq \ + foreach i ( Nentrez Psequin asn2ff asn2xml asn2gb asn2idx asndhuff asntool bl2seq \ blastall blastcl3 blastclust blastpgp cdscan checksub \ copymat ddv demo_regexp demo_regexp_grep dosimple entrcmd entrez \ - errhdr fa2htgs fastacmd findspl fmerge formatdb getfeat getmesh \ - getpub getseq gil2bin idfetch impala indexpub makemat makeset \ + errhdr fa2htgs fastacmd findspl fmerge formatdb formatrpsdb getfeat \ + getmesh getpub getseq gil2bin idfetch impala indexpub makemat makeset \ megablast ncbisort netentcf rpsblast seedtop seqtest sequin entrez2 \ tbl2asn test_regexp testcore testobj testval udv vecscreen Cn3D \ blast debruijn $WWWBLAST ) diff --git a/make/makenet.unx b/make/makenet.unx index 5528c1a0..d6bdb14d 100644 --- a/make/makenet.unx +++ b/make/makenet.unx @@ -1,6 +1,6 @@ # makefile for network demo programs and network entrez # -# $Id: makenet.unx,v 6.175 2004/05/17 17:56:58 dondosha Exp $ +# $Id: makenet.unx,v 6.181 2004/08/09 13:07:02 madden Exp $ # test, ignore # # Sun with unbundled ANSI compiler [ make CC=acc RAN=ranlib ] @@ -520,7 +520,7 @@ utilities : $(EXEUTIL) vibutilities : $(EXEUTILVIB) -.NO_PARALLEL: copy nocopy Tentrez sequin Psequin Ssequin elecpcr asn2fast asn2asn Nbatch Nbatch2 Nbatch3 Nentrcmd seqget idfetch session test_ncbi_socket test_ncbi_dsock test_ncbisock debug_server rtestval rasn2ff asn2gb asn2gb_psf asn2fsa asn2fsa_psf flint gbseqget insdseqget testent2 entrez2 spidey dotmatrix ingenue condense bl2seq +.NO_PARALLEL: copy nocopy Tentrez sequin Psequin Ssequin elecpcr asn2fast asn2asn Nbatch Nbatch2 Nbatch3 Nentrcmd seqget idfetch session test_ncbi_socket test_ncbi_dsock test_ncbisock debug_server rtestval rasn2ff asn2gb asn2gb_psf asn2fsa asn2fsa_psf tbl2asn asn2all flint gbseqget insdseqget testent2 entrez2 spidey dotmatrix ingenue condense bl2seq .WAIT: echo Waiting...go @@ -669,6 +669,8 @@ copy : $(SRCCOPY) ../demo/asn2ff.c . $(SRCCOPY) ../demo/asn2gb.c . $(SRCCOPY) ../demo/asn2fsa.c . + $(SRCCOPY) ../demo/asn2all.c . + $(SRCCOPY) ../demo/tbl2asn.c . $(SRCCOPY) ../demo/flint.c . $(SRCCOPY) ../demo/gbseqget.c . $(SRCCOPY) ../demo/insdseqget.c . @@ -1100,12 +1102,12 @@ netentcf : netentcf.c $(ULIB31) $(CC) -o netentcf $(LDFLAGS) netentcf.c $(LIB31) $(LIB20) $(LIB22) $(LIB4) $(LIB23) $(LIB3) $(LIB8) $(LIB7) $(NETCLILIB) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) ddv : $(OBJDDV) - $(CC) -o ddv $(LDFLAGS) $(OBJDDV) $(LIB41) $(LIB31) $(LIB20) $(LIB22) $(LIB45) \ + $(CC) -o ddv $(LDFLAGS) $(OBJDDV) $(LIB61) $(LIB60) $(LIB41) $(LIB31) $(LIB20) $(LIB22) $(LIB45) \ $(LIB8) $(LIB7) $(NETCLILIB) $(LIB3) $(LIB4) $(LIB23) $(LIB2) $(LIB1) \ $(VIBLIBS) $(OTHERLIBS) udv : $(OBJUDV) - $(CC) -o udv $(LDFLAGS) $(OBJUDV) $(LIB41) $(LIB31) $(LIB20) $(LIB22) $(LIB45) \ + $(CC) -o udv $(LDFLAGS) $(OBJUDV) $(LIB61) $(LIB60) $(LIB41) $(LIB31) $(LIB20) $(LIB22) $(LIB45) \ $(LIB8) $(LIB7) $(NETCLILIB) $(LIB3) $(LIB4) $(LIB23) $(LIB2) \ $(LIB1) $(VIBLIBS) $(OTHERLIBS) @@ -1200,6 +1202,14 @@ asn2fsa_psf : asn2fsa.c $(CC) -DINTERNAL_NCBI_ASN2FSA -g -o asn2fsa_psf $(LDFLAGS) asn2fsa.c $(THREAD_OBJ) $(LIB_PS) \ $(LIB23) $(LIB2) $(LIB1) $(NCBI_SYBLIBS_CT_r) $(OTHERLIBS) $(THREAD_OTHERLIBS) +# asn2all program (asn2all) +asn2all : asn2all.c + $(CC) -g -o asn2all $(LDFLAGS) asn2all.c $(THREAD_OBJ) $(LIB41) $(NETCLILIB) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) + +# tbl2asn +tbl2asn : tbl2asn.c + $(CC) -o tbl2asn $(LDFLAGS) tbl2asn.c $(LIB23) $(LIB2) $(NETCLILIB) $(LIB1) $(OTHERLIBS) + # flint program (flint) flint : flint.c $(CC) -g -o flint $(LDFLAGS) flint.c $(LIB41) $(NETCLILIB) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) @@ -1218,7 +1228,7 @@ testent2 : testent2.c # network Entrez2 application (entrez2) entrez2 : entrez2.c - $(CC) -g -o entrez2 $(LDFLAGS) entrez2.c $(LIB41) $(LIB6) $(LIB20) $(LIB22) $(LIB23) $(LIB2) $(LIB4) $(LIB1) $(VIBLIBS) $(OTHERLIBS) + $(CC) -g -o entrez2 $(LDFLAGS) entrez2.c $(LIB61) $(LIB60) $(LIB41) $(LIB6) $(LIB20) $(LIB22) $(LIB23) $(LIB2) $(LIB4) $(LIB1) $(VIBLIBS) $(OTHERLIBS) $(VIB_POST_LINK) entrez2 # demo program (spidey) @@ -1274,7 +1284,7 @@ blastcl3: blastall.c $(BNETCLILIB) $(BLIB36) # BLAST 2 sequences # Uses network libraries to access Entrez for retrieving sequences by gi/accession bl2seq : bl2seq.c - $(CC) -o bl2seq $(LDFLAGS) bl2seq.c $(LIB23) $(LIB41) $(NETCLILIB) $(LIB2) $(LIB1) $(OTHERLIBS) + $(CC) -o bl2seq $(LDFLAGS) bl2seq.c $(LIB61) $(LIB60) $(LIB23) $(LIB41) $(NETCLILIB) $(LIB2) $(LIB1) $(OTHERLIBS) # test client for the suggest network service suggcli: suggcli.c $(BNETCLILIB) $(BLIB24) diff --git a/make/msvc_prj/algo/blast/api/blastapi.dsp b/make/msvc_prj/algo/blast/api/blastapi.dsp index 7bb197fe..7d1fa949 100644 --- a/make/msvc_prj/algo/blast/api/blastapi.dsp +++ b/make/msvc_prj/algo/blast/api/blastapi.dsp @@ -62,6 +62,14 @@ SOURCE=..\..\..\..\..\algo\blast\api\blast_input.c # End Source File # Begin Source File +SOURCE=..\..\..\..\..\algo\blast\api\blast_mtlock.c +# End Source File +# Begin Source File + +SOURCE=..\..\..\..\..\algo\blast\api\blast_prelim.c +# End Source File +# Begin Source File + SOURCE=..\..\..\..\..\algo\blast\api\blast_returns.c # End Source File # Begin Source File @@ -70,6 +78,10 @@ SOURCE=..\..\..\..\..\algo\blast\api\blast_tabular.c # End Source File # Begin Source File +SOURCE=..\..\..\..\..\algo\blast\api\blast_tback.c +# End Source File +# Begin Source File + SOURCE=..\..\..\..\..\algo\blast\api\blast_seq.c # End Source File # Begin Source File @@ -82,7 +94,7 @@ SOURCE=..\..\..\..\..\algo\blast\api\hspstream_queue.c # End Source File # Begin Source File -SOURCE=..\..\..\..\..\algo\blast\api\multiseq_src.c +SOURCE=..\..\..\..\..\algo\blast\api\seqsrc_multiseq.c # End Source File # Begin Source File @@ -106,6 +118,14 @@ SOURCE=..\..\..\..\..\algo\blast\api\blast_input.h # End Source File # Begin Source File +SOURCE=..\..\..\..\..\algo\blast\api\blast_mtlock.h +# End Source File +# Begin Source File + +SOURCE=..\..\..\..\..\algo\blast\api\blast_prelim.h +# End Source File +# Begin Source File + SOURCE=..\..\..\..\..\algo\blast\api\blast_returns.h # End Source File # Begin Source File @@ -114,6 +134,10 @@ SOURCE=..\..\..\..\..\algo\blast\api\blast_tabular.h # End Source File # Begin Source File +SOURCE=..\..\..\..\..\algo\blast\api\blast_tback.h +# End Source File +# Begin Source File + SOURCE=..\..\..\..\..\algo\blast\api\blast_seq.h # End Source File # Begin Source File @@ -126,7 +150,7 @@ SOURCE=..\..\..\..\..\algo\blast\api\hspstream_queue.h # End Source File # Begin Source File -SOURCE=..\..\..\..\..\algo\blast\api\multiseq_src.h +SOURCE=..\..\..\..\..\algo\blast\api\seqsrc_multiseq.h # End Source File # Begin Source File diff --git a/make/msvc_prj/all2one.sh b/make/msvc_prj/all2one.sh new file mode 100755 index 00000000..71af0336 --- /dev/null +++ b/make/msvc_prj/all2one.sh @@ -0,0 +1,457 @@ +#! /bin/sh +# +# $Id: all2one.sh,v 1.19 2002/12/31 16:21:19 lavr Exp $ +# =========================================================================== +# +# PUBLIC DOMAIN NOTICE +# National Center for Biotechnology Information +# +# This software/database is a "United States Government Work" under the +# terms of the United States Copyright Act. It was written as part of +# the author's official duties as a United States Government employee and +# thus cannot be copyrighted. This software/database is freely available +# to the public for use. The National Library of Medicine and the U.S. +# Government have not placed any restriction on its use or reproduction. +# +# Although all reasonable efforts have been taken to ensure the accuracy +# and reliability of the software and data, the NLM and the U.S. +# Government do not and cannot warrant the performance or results that +# may be obtained by using this software or data. The NLM and the U.S. +# Government disclaim all warranties, express or implied, including +# warranties of performance, merchantability or fitness for any particular +# purpose. +# +# Please cite the author in any work or product based on this material. +# +# =========================================================================== +# +# Author: Anton Lavrentiev +# +# MSVC project file converter. Make single-configuration project file from a +# multi-configuration project file. +# +# =========================================================================== + +usage() { + echo 'Config extractor for Microsoft Visual C++ Project File V 6.0' + echo 'Usage:' + echo `basename $0` 'filename [config]' + exit 1 +} + +if [ _$1 = _ ]; then + usage +elif [ \! -f $1 ]; then + echo "ERROR: File \"$1\" must exist. Stop." + exit 3 +fi + +if [ _$2 = _SecretWord ]; then + CVSUSE=1 + CFG="" +else + CVSUSE=0 + CFG=${2:-""} +fi + +file=/tmp/$$_file + +# DOS-2-UNIX conversion (shouldn't be here, but just in case for sanity). +# +sed -e 's/
*$//' $1 >$file + +# Check signature. +# +cat <<-"EOF" >/tmp/$$_genusign + # Microsoft Developer Studio Project File + # Microsoft Developer Studio Generated Build File, Format Version 6.00 + # ** DO NOT EDIT ** + + # TARGTYPE + EOF +cat /dev/null >/tmp/$$_filesign +head -1 $file | sed -e 's/ -.*//' >>/tmp/$$_filesign +head -3 $file | tail +2 >>/tmp/$$_filesign +head -5 $file | tail +4 | sed -e 's/ *".*$//' >>/tmp/$$_filesign +diff /tmp/$$_filesign /tmp/$$_genusign >/dev/null 2>&1 +exit=$? +rm -f /tmp/$$_filesign /tmp/$$_genusign +if [ $exit != 0 ]; then + echo "ERROR: $1 doesn't look like MSVC++ Project File. Stop." + rm -f $file + exit 2 +fi + +# Extract configuration part of the project file and count configurations. +# +cat <<EOF >/tmp/$$_.sed +/^!IF /,/^!ENDIF/ { + /^!ENDIF/ q + p +} +d +EOF +NCFG=`sed -n -f /tmp/$$_.sed $file | egrep -c '^[!ELS]+IF'` +rm -f /tmp/$$_.sed +if [ $CVSUSE = 0 ]; then + echo "${1}: $NCFG configuration(s) found" +elif [ `grep '^# Name "' $file | sed -e 's/^# Name //g' | grep -c DebugDLL` = 0 ]; then + echo "ERROR: ${1}: Only DebugDLL configuration can be checked in to CVS. Stop." + rm -f $file + exit 2 +fi + +# Check number of configurations, in case of 1 and CVS - check standard paths. +# +if [ $NCFG -le 1 ]; then + + # If not in CVS - just leave + # + if [ $CVSUSE = 0 ]; then + rm -f $file + exit 0 + fi + + echo "${1}: Analyzing include and library path(s)..." + + # Standard relative path (from argument 3 if in CVS). + # + pr='./../../..' + if [ -n "$3" ]; then + for k in `echo $3 | sed -e 's|/| |g'` ; do + if [ "$k" != "." ]; then + if [ "$pr" != "." ]; then + if [ "$k" = ".." ]; then + pr=`echo "$pr" | sed -e 's|/..$||'` + else + pr="${pr}/.." + fi + fi + fi + done + fi + + # Start preparing message file and sed script. + # + echo "${1}: The following path(s) modified:" >/tmp/$$_msg + cat /dev/null >/tmp/$$_path.sed + + # Some helper functions. + # Make case-insensitive text pattern from given string. + # + expandcs() { + temp="" + for q in `echo $1 | sed -e 's|.|& |g'` ; do + if [ `echo $q | grep -c '[A-Za-z]'` != 0 ]; then + temp="${temp}[`echo $q | tr '[a-z]' '[A-Z]'``echo $q | tr '[A-Z]' '[a-z]'`]" + else + temp="${temp}$q" + fi + done + echo "$temp" + } + + # In the given string replace slashes with backslashes. + # + backslash() { + echo $1 | sed -e 's|/|\\\\|g' + } + + # Make slash-insensitive (back or forward) pattern from given string. + # + slashify() { + echo $1 | sed -e 's|/|[/\\\\]|g' + } + + # The loop for all packages we have to care about. + # + for k in "wxwin" "ncbi" "fltk" ; do + + # Absolute path prefix (DIZZY). + # + pa='//DIZZY/public/'$k + + # Form all paths and convert them to ugly DOS format + # (backslashed and yet case-insensitive). Dragons here, careful! + # Don't forget to double all backslashes, as they will appear in shell + # substitutions and sed script (and thus must be escaped). + # + inca="${pa}/include" + incr="${pr}/${k}/include" + liba="${pa}/DebugDLL" + libr="${pr}/${k}/DebugDLL" + + incas=`expandcs "$inca"` + tmp=`echo "$incr" | sed -e 's|^[/.]*||'` + incrs=`expandcs "$tmp"` + libas=`expandcs "$liba"` + tmp=`echo "$libr" | sed -e 's|^[/.]*||'` + librs=`expandcs "$tmp"` + + inca=`backslash "$inca"` + incr=`backslash "$incr"` + liba=`backslash "$liba"` + libr=`backslash "$libr"` + incas=`slashify "$incas"` + incrs=`slashify "$incrs"` + libas=`slashify "$libas"` + librs=`slashify "$librs"` + + # Continue to prepare message file (used afterwards). + # + echo /tmp/$$_stampi${k} Include: "$incr" and "$inca" >>/tmp/$$_msg + echo /tmp/$$_stampr${k} Resource: "$incr" and "$inca" >>/tmp/$$_msg + echo /tmp/$$_stampl${k} Library: "$libr" and "$liba" >>/tmp/$$_msg + #for q in $inca $incas $incr $incrs $liba $libas $libr $librs ; do + # echo $q + #done + + # Continue sed command script, which incorporates include and lib paths + # (if and only if resembling paths were in the project file), and, + # upon successful substitutions, leaves non-empty stamp files in /tmp. + # + cat <<-EOF >>/tmp/$$_path.sed + /^# ADD .*CPP / { + s|/I *[^ ]*${incrs}[^ ]*|@I|g + s|/I *[^ ]*${incas}[^ ]*|@I|g + s|@I|/I "${incr}" /I "${inca}"|w /tmp/$$_stampi$k + s| *@I||g + } + /^# ADD .*RSC / { + s|/i *[^ ]*${incrs}[^ ]*|@i|g + s|/i *[^ ]*${incas}[^ ]*|@i|g + s|@i|/i "${incr}" /i "${inca}"|w /tmp/$$_stampr$k + s| *@i||g + } + /^# ADD .*LINK32 / { + s|/libpath:[^ ]*${librs}[^ ]*|@L|g + s|/libpath:[^ ]*${libas}[^ ]*|@L|g + s|@L|/libpath:"${libr}" /libpath:"${liba}"|w /tmp/$$_stampl$k + s| *@L||g + } + EOF + done + #cat /tmp/$$_path.sed + + # Ok, time to run the sed script and make the dirty hacker's job... + # + sed -f /tmp/$$_path.sed $file >$file.new + + # If the output file was changed, see what stamps are non-empty, + # then print the corresponding message(s) from message file. + # + diff $file $file.new >/dev/null 2>&1 + if [ $? != 0 ]; then + head -1 /tmp/$$_msg + for q in "i" "r" "l" ; do + for k in /tmp/$$_stamp${q}* ; do + if [ -s $k ]; then + grep "$k" /tmp/$$_msg | sed -e "s|^$k ||" + fi + done + done + + # Prepare backup copy. As the resulting file has to be checked in, + # it has to be in the UNIX text format. No conversion necessary. + # + mv $1 $1.bak + cp $file.new $1 + touch -r $1.bak $1 + fi + + # Clean up and leave. + # + rm -f $file $file.new /tmp/$$_path.sed /tmp/$$_msg /tmp/$$_stamp* + exit 0 +fi + +# More than 1 configuration at this point. +# +if [ $CVSUSE = 1 ]; then + echo "ERROR: $1 contains $NCFG configurations, cannot be checked in. Stop." + rm -f $file + exit 2 +fi + +# Extract configuration names to check the project consistency. +# +grep '^!MESSAGE "' $file | sed -e 's/^!MESSAGE //' -e 's/ *(.*).*$//' >/tmp/$$_mnames +grep '^# Name "' $file | sed -e 's/^# Name //g' >/tmp/$$_nnames + +# Check the consistency. +# +diff /tmp/$$_mnames /tmp/$$_nnames >/dev/null 2>&1 +if [ $? != 0 -o `cat /tmp/$$_nnames | wc -l` != $NCFG ]; then + ERROR=1 +else + ERROR=0 +fi +rm -f /tmp/$$_mnames /tmp/$$_nnames +if [ $ERROR = 1 ]; then + echo "ERROR: Project file inconsistency found in $1. Stop." + rm -f $file + exit 2 +fi + +# Check for per-config issues. +# +DEP=`grep -c '^# PROP *AllowPerConfigDependencies *1' $file` +cat <<EOF >/tmp/$$_dep.sed +/^# Begin Target/,\$ p +d +EOF +sed -n -f /tmp/$$_dep.sed $file | grep '^!IF' >/dev/null 2>&1 +if [ $DEP = 0 -o $? != 0 ]; then + DEP=0 +fi +rm -f /tmp/$$_dep.sed $file + +# Query the user to choose a configuration. +# Keep /tmp clean as the user may choose to cancel (Ctrl-C). +# +while true; do + if [ $DEP != 0 ]; then + echo "WARNING: $1 contains per-configuration dependencies," + echo 'which may or may not be handled correctly by this script.' + fi + sed -e 's/
*$//' $1 | grep '^# Name "' | sed -e 's/^# Name //g' >/tmp/$$_cfg + cat /dev/null >/tmp/$$_cfglist + i=1 + for j in `sed -e 'y/ "/~%/' /tmp/$$_cfg` ; do + echo ${i}: `echo $j | sed -e 'y/~/ /' -e 's/%//g'` >>/tmp/$$_cfglist + i=`expr "$i" + 1` + done + rm -f /tmp/$$_cfg + cat /tmp/$$_cfglist + if [ _$CFG = _ ]; then + rm -f /tmp/$$_cfglist + echo 'Please enter required configuration number' + read i + if [ ${i:=0} -ge 1 -a $i -le $NCFG ]; then + break + fi + echo "Invalid configuration number \"$i\"" + echo "${1}: $NCFG configuration(s) found" + else + i=`grep "\\\\<$CFG\\\\>\\\$" /tmp/$$_cfglist | sed -e 's/:.*//'` + rm -f /tmp/$$_cfglist + if [ _$i = _ ]; then + echo "ERROR: Configuration \"$CFG\" not found in $1. Stop." + exit 2 + fi + break + fi +done + +# DOS-2-UNIX conversion once more and final. +# +sed -e 's/
*$//' $1 >$file + +# Find the chosen configuration. +# +CFG=`grep '^# Name "' $file | sed -e 's/^# Name //' | head -$i | tail -1` +echo "Configuration ${i}: $CFG will be extracted" + +# Start extracting beginning of the file, changing configuration name. +# +cat <<EOF >/tmp/$$_head.sed +/^!MESSAGE "/q +/CFG/ s/=.*\$/=$CFG/ +/^CFG=/ s/"//g +p +d +EOF +sed -n -f /tmp/$$_head.sed $file >/tmp/$$_head +rm -f /tmp/$$_head.sed +grep "$CFG" $file | grep -v 'CFG' | head -1 >>/tmp/$$_head +echo '!MESSAGE ' >>/tmp/$$_head +echo >>/tmp/$$_head + +# Now extract middle part (just before configurations begin). +# +cat <<EOF >/tmp/$$_mid.sed +/^# Begin Project/,/^!IF/ { + /^# PROP *AllowPerConfigDependencies / s/ *1/ 0/ + /^!IF / q + p +} +d +EOF +sed -n -f /tmp/$$_mid.sed $file >>/tmp/$$_head +rm -f /tmp/$$_mid.sed + +# Extract all configurations, and select the required among them. +# +cat <<EOF >/tmp/$$_cfg.sed +/^!IF /,/^!ENDIF/ { + p + /^!ENDIF/ q +} +d +EOF +sed -n -f /tmp/$$_cfg.sed $file >/tmp/$$_cfg +cat <<EOF >/tmp/$$_cfg.sed +/^!.*CFG.*== *$CFG\$/,/^!E/ p +d +EOF +sed -n -f /tmp/$$_cfg.sed /tmp/$$_cfg >/tmp/$$_cfg1 +rm -f /tmp/$$_cfg.sed + +# Enclose extracted config in proper IF...ENDIF. +# +head -1 /tmp/$$_cfg1 | sed -e 's/^!ELSEIF /!IF /' >/tmp/$$_cfg +tail +2 /tmp/$$_cfg1 | sed -e 's/^!ELSEIF .*/!ENDIF /' >>/tmp/$$_cfg +rm -f /tmp/$$_cfg1 + +# Concatenate extracted config with what has been extracted earlier. +# +cat /tmp/$$_head /tmp/$$_cfg >/tmp/$$_out +rm -f /tmp/$$_head /tmp/$$_cfg +echo >>/tmp/$$_out + +# Finalize the project file, adding Target and Source sections. +# +cat <<EOF >/tmp/$$_tail.sed +/^# Begin Target/,/^# End Project/ { + /^!IF /,/^!ENDIF/ { + /^!.*CFG.*== *$CFG\$/,/^!E/ { + s/^!ELSEIF \(.*CFG.*== *$CFG\)\$/!IF \1/ + s/^!ELSEIF .*/!ENDIF/ + p + } + d + } + /^# Name / { + /^# Name $CFG/ !d + } + p +} +d +EOF +sed -n -f /tmp/$$_tail.sed $file >>/tmp/$$_out +rm -f /tmp/$$_tail.sed + +# Remove consequent empty lines (could occur earlier in substitutions) +# and replace original project file (backup kept in .bak). +# Output is always in native (UNIX) text file format. +# +mv $1 $1.bak +cat <<EOF >/tmp/$$_pretty.sed +/./ { + p + d +} +/^\$/ p +:Empty +/^\$/ { + N + s/.// + b Empty +} +p +EOF +sed -n -f /tmp/$$_pretty.sed /tmp/$$_out >$1 +rm -f /tmp/$$_pretty.sed /tmp/$$_out $file +touch -r $1.bak $1 + +exit 0 diff --git a/make/msvc_prj/demo/asn2all/demo_asn2all.dsp b/make/msvc_prj/demo/asn2all/demo_asn2all.dsp new file mode 100644 index 00000000..5d71af8b --- /dev/null +++ b/make/msvc_prj/demo/asn2all/demo_asn2all.dsp @@ -0,0 +1,75 @@ +# Microsoft Developer Studio Project File - Name="demo_asn2all" - Package Owner=<4> +# Microsoft Developer Studio Generated Build File, Format Version 6.00 +# ** DO NOT EDIT ** + +# TARGTYPE "Win32 (x86) Application" 0x0101 + +CFG=demo_asn2all - Win32 DebugDLL +!MESSAGE This is not a valid makefile. To build this project using NMAKE, +!MESSAGE use the Export Makefile command and run +!MESSAGE +!MESSAGE NMAKE /f "demo_asn2all.mak". +!MESSAGE +!MESSAGE You can specify a configuration when running NMAKE +!MESSAGE by defining the macro CFG on the command line. For example: +!MESSAGE +!MESSAGE NMAKE /f "demo_asn2all.mak" CFG="demo_asn2all - Win32 DebugDLL" +!MESSAGE +!MESSAGE Possible choices for configuration are: +!MESSAGE +!MESSAGE "demo_asn2all - Win32 DebugDLL" (based on "Win32 (x86) Application") +!MESSAGE + +# Begin Project +# PROP AllowPerConfigDependencies 0 +# PROP Scc_ProjName "" +# PROP Scc_LocalPath "" +CPP=cl.exe +MTL=midl.exe +RSC=rc.exe +# PROP BASE Use_MFC 0 +# PROP BASE Use_Debug_Libraries 1 +# PROP BASE Output_Dir "DebugDLL" +# PROP BASE Intermediate_Dir "DebugDLL" +# PROP BASE Target_Dir "" +# PROP Use_MFC 0 +# PROP Use_Debug_Libraries 1 +# PROP Output_Dir "DebugDLL" +# PROP Intermediate_Dir "DebugDLL" +# PROP Ignore_Export_Lib 0 +# PROP Target_Dir "" +LIB32=link.exe -lib +# ADD BASE CPP /nologo /MDd /W3 /GX /Z7 /Od /D "WIN32" /D "_DEBUG" /D "_NETENT_" /D "_WINDOWS" /D "_MBCS" /YX /FD /GZ /c +# ADD CPP /nologo /MDd /W3 /GR /Z7 /Od /I "..\..\..\.." /I "..\..\..\..\corelib" /I "..\..\..\..\connect" /I "..\..\..\..\api" /I "..\..\..\..\asnstat" /I "..\..\..\..\asnlib" /I "..\..\..\..\access" /I "..\..\..\..\object" /I "..\..\..\..\cdromlib" /I "..\..\..\..\biostruc" /I "..\..\..\..\tools" /D "_CONSOLE" /D "WIN32" /D "_DEBUG" /YX /FD /GZ /c +# ADD BASE MTL /nologo /D "_DEBUG" /mktyplib203 /win32 +# ADD MTL /nologo /D "_DEBUG" /mktyplib203 /win32 +# ADD BASE RSC /l 0x409 /d "_DEBUG" +# ADD RSC /l 0x409 /d "_DEBUG" +BSC32=bscmake.exe +# ADD BASE BSC32 /nologo +# ADD BSC32 /nologo +LINK32=link.exe +# ADD BASE LINK32 kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib ole32.lib oleaut32.lib uuid.lib odbc32.lib odbccp32.lib /nologo /subsystem:windows /pdb:none /debug /machine:I386 +# ADD LINK32 oldnames.lib kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib wsock32.lib /nologo /subsystem:console /debug /machine:I386 /out:"DebugDLL/asn2all.exe" /pdbtype:sept +# SUBTRACT LINK32 /pdb:none +# Begin Target + +# Name "demo_asn2all - Win32 DebugDLL" +# Begin Group "Source Files" + +# PROP Default_Filter "cpp;c;cxx;rc;def;r;odl;idl;hpj;bat" +# Begin Source File + +SOURCE=..\..\..\..\demo\asn2all.c +# End Source File +# Begin Source File + +SOURCE=..\..\..\..\link\mswin\asn2all.rc +# End Source File +# End Group +# Begin Group "Header Files" + +# PROP Default_Filter "h;hpp;hxx;hm;inl" +# End Group +# End Target +# End Project diff --git a/make/msvc_prj/demo/asn2fsa/demo_asn2fsa.dsp b/make/msvc_prj/demo/asn2fsa/demo_asn2fsa.dsp new file mode 100644 index 00000000..0e34cd9f --- /dev/null +++ b/make/msvc_prj/demo/asn2fsa/demo_asn2fsa.dsp @@ -0,0 +1,75 @@ +# Microsoft Developer Studio Project File - Name="demo_asn2fsa" - Package Owner=<4> +# Microsoft Developer Studio Generated Build File, Format Version 6.00 +# ** DO NOT EDIT ** + +# TARGTYPE "Win32 (x86) Application" 0x0101 + +CFG=demo_asn2fsa - Win32 DebugDLL +!MESSAGE This is not a valid makefile. To build this project using NMAKE, +!MESSAGE use the Export Makefile command and run +!MESSAGE +!MESSAGE NMAKE /f "demo_asn2fsa.mak". +!MESSAGE +!MESSAGE You can specify a configuration when running NMAKE +!MESSAGE by defining the macro CFG on the command line. For example: +!MESSAGE +!MESSAGE NMAKE /f "demo_asn2fsa.mak" CFG="demo_asn2fsa - Win32 DebugDLL" +!MESSAGE +!MESSAGE Possible choices for configuration are: +!MESSAGE +!MESSAGE "demo_asn2fsa - Win32 DebugDLL" (based on "Win32 (x86) Application") +!MESSAGE + +# Begin Project +# PROP AllowPerConfigDependencies 0 +# PROP Scc_ProjName "" +# PROP Scc_LocalPath "" +CPP=cl.exe +MTL=midl.exe +RSC=rc.exe +# PROP BASE Use_MFC 0 +# PROP BASE Use_Debug_Libraries 1 +# PROP BASE Output_Dir "DebugDLL" +# PROP BASE Intermediate_Dir "DebugDLL" +# PROP BASE Target_Dir "" +# PROP Use_MFC 0 +# PROP Use_Debug_Libraries 1 +# PROP Output_Dir "DebugDLL" +# PROP Intermediate_Dir "DebugDLL" +# PROP Ignore_Export_Lib 0 +# PROP Target_Dir "" +LIB32=link.exe -lib +# ADD BASE CPP /nologo /MDd /W3 /GX /Z7 /Od /D "WIN32" /D "_DEBUG" /D "_NETENT_" /D "_WINDOWS" /D "_MBCS" /YX /FD /GZ /c +# ADD CPP /nologo /MDd /W3 /GR /Z7 /Od /I "..\..\..\.." /I "..\..\..\..\corelib" /I "..\..\..\..\connect" /I "..\..\..\..\api" /I "..\..\..\..\asnstat" /I "..\..\..\..\asnlib" /I "..\..\..\..\access" /I "..\..\..\..\object" /I "..\..\..\..\cdromlib" /I "..\..\..\..\biostruc" /I "..\..\..\..\tools" /D "_CONSOLE" /D "WIN32" /D "_DEBUG" /YX /FD /GZ /c +# ADD BASE MTL /nologo /D "_DEBUG" /mktyplib203 /win32 +# ADD MTL /nologo /D "_DEBUG" /mktyplib203 /win32 +# ADD BASE RSC /l 0x409 /d "_DEBUG" +# ADD RSC /l 0x409 /d "_DEBUG" +BSC32=bscmake.exe +# ADD BASE BSC32 /nologo +# ADD BSC32 /nologo +LINK32=link.exe +# ADD BASE LINK32 kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib ole32.lib oleaut32.lib uuid.lib odbc32.lib odbccp32.lib /nologo /subsystem:windows /pdb:none /debug /machine:I386 +# ADD LINK32 oldnames.lib kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib wsock32.lib /nologo /subsystem:console /debug /machine:I386 /out:"DebugDLL/asn2fsa.exe" /pdbtype:sept +# SUBTRACT LINK32 /pdb:none +# Begin Target + +# Name "demo_asn2fsa - Win32 DebugDLL" +# Begin Group "Source Files" + +# PROP Default_Filter "cpp;c;cxx;rc;def;r;odl;idl;hpj;bat" +# Begin Source File + +SOURCE=..\..\..\..\demo\asn2fsa.c +# End Source File +# Begin Source File + +SOURCE=..\..\..\..\link\mswin\asn2fsa.rc +# End Source File +# End Group +# Begin Group "Header Files" + +# PROP Default_Filter "h;hpp;hxx;hm;inl" +# End Group +# End Target +# End Project diff --git a/make/msvc_prj/demo/asn2idx/demo_asn2idx.dsp b/make/msvc_prj/demo/asn2idx/demo_asn2idx.dsp new file mode 100644 index 00000000..d175e254 --- /dev/null +++ b/make/msvc_prj/demo/asn2idx/demo_asn2idx.dsp @@ -0,0 +1,81 @@ +# Microsoft Developer Studio Project File - Name="demo_asn2idx" - Package Owner=<4> +# Microsoft Developer Studio Generated Build File, Format Version 6.00 +# ** DO NOT EDIT ** + +# TARGTYPE "Win32 (x86) Application" 0x0101 + +CFG=demo_asn2idx - Win32 DebugDLL +!MESSAGE This is not a valid makefile. To build this project using NMAKE, +!MESSAGE use the Export Makefile command and run +!MESSAGE +!MESSAGE NMAKE /f "demo_asn2idx.mak". +!MESSAGE +!MESSAGE You can specify a configuration when running NMAKE +!MESSAGE by defining the macro CFG on the command line. For example: +!MESSAGE +!MESSAGE NMAKE /f "demo_asn2idx.mak" CFG="demo_asn2idx - Win32 DebugDLL" +!MESSAGE +!MESSAGE Possible choices for configuration are: +!MESSAGE +!MESSAGE "demo_asn2idx - Win32 DebugDLL" (based on "Win32 (x86) Application") +!MESSAGE + +# Begin Project +# PROP AllowPerConfigDependencies 0 +# PROP Scc_ProjName "" +# PROP Scc_LocalPath "" +CPP=cl.exe +MTL=midl.exe +RSC=rc.exe + +!IF "$(CFG)" == "demo_asn2idx - Win32 DebugDLL" + +# PROP BASE Use_MFC 0 +# PROP BASE Use_Debug_Libraries 1 +# PROP BASE Output_Dir "DebugDLL" +# PROP BASE Intermediate_Dir "DebugDLL" +# PROP BASE Target_Dir "" +# PROP Use_MFC 0 +# PROP Use_Debug_Libraries 1 +# PROP Output_Dir "DebugDLL" +# PROP Intermediate_Dir "DebugDLL" +# PROP Ignore_Export_Lib 0 +# PROP Target_Dir "" +LIB32=link.exe -lib +# ADD BASE CPP /nologo /MDd /W3 /Gm /GX /Z7 /Od /D "WIN32" /D "_DEBUG" /D "_NETENT_" /D "_WINDOWS" /D "_MBCS" /YX /FD /GZ /c +# ADD CPP /nologo /MDd /W3 /Gm /GR /Z7 /Od /I "..\..\..\.." /I "..\..\..\..\corelib" /I "..\..\..\..\api" /I "..\..\..\..\asnstat" /I "..\..\..\..\asnlib" /I "..\..\..\..\object" /I "..\..\..\..\cdromlib" /I "..\..\..\..\biostruc" /I "..\..\..\..\tools" /D "_CONSOLE" /D "WIN32" /D "_DEBUG" /YX /FD /GZ /c +# ADD BASE MTL /nologo /D "_DEBUG" /mktyplib203 /win32 +# ADD MTL /nologo /D "_DEBUG" /mktyplib203 /win32 +# ADD BASE RSC /l 0x409 /d "_DEBUG" +# ADD RSC /l 0x409 /d "_DEBUG" +BSC32=bscmake.exe +# ADD BASE BSC32 /nologo +# ADD BSC32 /nologo +LINK32=link.exe +# ADD BASE LINK32 kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib ole32.lib oleaut32.lib uuid.lib odbc32.lib odbccp32.lib /nologo /incremental:yes /subsystem:windows /pdb:none /debug /machine:I386 /pdbtype:sept +# ADD LINK32 oldnames.lib kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib /nologo /incremental:yes /subsystem:console /pdb:none /debug /machine:I386 /out:"DebugDLL/asn2idx.exe" /pdbtype:sept +# SUBTRACT LINK32 /pdb:none + +!ENDIF + +# Begin Target + +# Name "demo_asn2idx - Win32 DebugDLL" +# Begin Group "Source Files" + +# PROP Default_Filter "cpp;c;cxx;rc;def;r;odl;idl;hpj;bat" +# Begin Source File + +SOURCE=..\..\..\..\demo\asn2idx.c +# End Source File +# Begin Source File + +SOURCE=..\..\..\..\link\mswin\asn2idx.rc +# End Source File +# End Group +# Begin Group "Header Files" + +# PROP Default_Filter "h;hpp;hxx;hm;inl" +# End Group +# End Target +# End Project diff --git a/make/msvc_prj/demo/formatrpsdb/demo_formatrpsdb.dsp b/make/msvc_prj/demo/formatrpsdb/demo_formatrpsdb.dsp new file mode 100644 index 00000000..43876760 --- /dev/null +++ b/make/msvc_prj/demo/formatrpsdb/demo_formatrpsdb.dsp @@ -0,0 +1,66 @@ +# Microsoft Developer Studio Project File - Name="demo_formatrpsdb" - Package Owner=<4> +# Microsoft Developer Studio Generated Build File, Format Version 6.00 +# ** DO NOT EDIT ** + +# TARGTYPE "Win32 (x86) Console Application" 0x0103 + +CFG=demo_formatrpsdb - Win32 DebugDLL +!MESSAGE This is not a valid makefile. To build this project using NMAKE, +!MESSAGE use the Export Makefile command and run +!MESSAGE +!MESSAGE NMAKE /f "demo_formatrpsdb.mak". +!MESSAGE +!MESSAGE You can specify a configuration when running NMAKE +!MESSAGE by defining the macro CFG on the command line. For example: +!MESSAGE +!MESSAGE NMAKE /f "demo_formatrpsdb.mak" CFG="demo_formatrpsdb - Win32 DebugDLL" +!MESSAGE +!MESSAGE Possible choices for configuration are: +!MESSAGE +!MESSAGE "demo_formatrpsdb - Win32 DebugDLL" (based on "Win32 (x86) Console Application") +!MESSAGE + +# Begin Project +# PROP AllowPerConfigDependencies 0 +# PROP Scc_ProjName "" +# PROP Scc_LocalPath "" +CPP=cl.exe +RSC=rc.exe +# PROP BASE Use_MFC 0 +# PROP BASE Use_Debug_Libraries 1 +# PROP BASE Output_Dir "DebugDLL" +# PROP BASE Intermediate_Dir "DebugDLL" +# PROP BASE Target_Dir "" +# PROP Use_MFC 0 +# PROP Use_Debug_Libraries 1 +# PROP Output_Dir "DebugDLL" +# PROP Intermediate_Dir "DebugDLL" +# PROP Ignore_Export_Lib 0 +# PROP Target_Dir "" +# ADD BASE CPP /nologo /W3 /Gm /GX /ZI /Od /D "WIN32" /D "_DEBUG" /D "_CONSOLE" /D "_MBCS" /YX /FD /GZ /c +# ADD CPP /nologo /MDd /W3 /Gm /GX /ZI /Od /I "..\..\..\.." /I "..\..\..\..\corelib" /I "..\..\..\..\api" /I "..\..\..\..\asnstat" /I "..\..\..\..\asnlib" /I "..\..\..\..\object" /I "..\..\..\..\cdromlib" /I "..\..\..\..\biostruc" /I "..\..\..\..\tools" /D "WIN32" /D "_DEBUG" /D "_CONSOLE" /D "_MBCS" /FR /YX /FD /GZ /c +# ADD BASE RSC /l 0x409 /d "_DEBUG" +# ADD RSC /l 0x409 /d "_DEBUG" +BSC32=bscmake.exe +# ADD BASE BSC32 /nologo +# ADD BSC32 /nologo +LINK32=link.exe +# ADD BASE LINK32 kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib ole32.lib oleaut32.lib uuid.lib odbc32.lib odbccp32.lib kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib ole32.lib oleaut32.lib uuid.lib odbc32.lib odbccp32.lib /nologo /subsystem:console /debug /machine:I386 /pdbtype:sept +# ADD LINK32 kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib ole32.lib oleaut32.lib uuid.lib odbc32.lib odbccp32.lib kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib ole32.lib oleaut32.lib uuid.lib odbc32.lib odbccp32.lib /nologo /subsystem:console /debug /machine:I386 /out:"DebugDLL/formatrpsdb.exe" /pdbtype:sept +# Begin Target + +# Name "demo_formatrpsdb - Win32 DebugDLL" +# Begin Group "Source Files" + +# PROP Default_Filter "" +# Begin Source File + +SOURCE=..\..\..\..\demo\formatrpsdb.c +# End Source File +# Begin Source File + +SOURCE=..\..\..\..\link\mswin\formatrpsdb.rc +# End Source File +# End Group +# End Target +# End Project diff --git a/make/msvc_prj/demo/tbl2asn/demo_tbl2asn.dsp b/make/msvc_prj/demo/tbl2asn/demo_tbl2asn.dsp index 5909e2fb..4ef8bef8 100644 --- a/make/msvc_prj/demo/tbl2asn/demo_tbl2asn.dsp +++ b/make/msvc_prj/demo/tbl2asn/demo_tbl2asn.dsp @@ -27,9 +27,6 @@ CFG=demo_tbl2asn - Win32 DebugDLL CPP=cl.exe MTL=midl.exe RSC=rc.exe - -!IF "$(CFG)" == "demo_tbl2asn - Win32 DebugDLL" - # PROP BASE Use_MFC 0 # PROP BASE Use_Debug_Libraries 1 # PROP BASE Output_Dir "DebugDLL" @@ -42,8 +39,8 @@ RSC=rc.exe # PROP Ignore_Export_Lib 0 # PROP Target_Dir "" LIB32=link.exe -lib -# ADD BASE CPP /nologo /MDd /W3 /Gm /GX /Z7 /Od /D "WIN32" /D "_DEBUG" /D "_NETENT_" /D "_WINDOWS" /D "_MBCS" /YX /FD /GZ /c -# ADD CPP /nologo /MDd /W3 /Gm /GR /Z7 /Od /I "..\..\..\.." /I "..\..\..\..\corelib" /I "..\..\..\..\api" /I "..\..\..\..\asnstat" /I "..\..\..\..\asnlib" /I "..\..\..\..\object" /I "..\..\..\..\cdromlib" /I "..\..\..\..\biostruc" /I "..\..\..\..\tools" /D "_CONSOLE" /D "WIN32" /D "_DEBUG" /YX /FD /GZ /c +# ADD BASE CPP /nologo /MDd /W3 /GX /Z7 /Od /D "WIN32" /D "_DEBUG" /D "_NETENT_" /D "_WINDOWS" /D "_MBCS" /YX /FD /GZ /c +# ADD CPP /nologo /MDd /W3 /GR /Z7 /Od /I "..\..\..\.." /I "..\..\..\..\corelib" /I "..\..\..\..\connect" /I "..\..\..\..\api" /I "..\..\..\..\asnstat" /I "..\..\..\..\asnlib" /I "..\..\..\..\access" /I "..\..\..\..\object" /I "..\..\..\..\cdromlib" /I "..\..\..\..\biostruc" /I "..\..\..\..\tools" /D "_CONSOLE" /D "WIN32" /D "_DEBUG" /YX /FD /GZ /c # ADD BASE MTL /nologo /D "_DEBUG" /mktyplib203 /win32 # ADD MTL /nologo /D "_DEBUG" /mktyplib203 /win32 # ADD BASE RSC /l 0x409 /d "_DEBUG" @@ -52,12 +49,9 @@ BSC32=bscmake.exe # ADD BASE BSC32 /nologo # ADD BSC32 /nologo LINK32=link.exe -# ADD BASE LINK32 kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib ole32.lib oleaut32.lib uuid.lib odbc32.lib odbccp32.lib /nologo /incremental:yes /subsystem:windows /pdb:none /debug /machine:I386 /pdbtype:sept -# ADD LINK32 oldnames.lib kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib /nologo /incremental:yes /subsystem:console /pdb:none /debug /machine:I386 /out:"DebugDLL/tbl2asn.exe" /pdbtype:sept +# ADD BASE LINK32 kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib ole32.lib oleaut32.lib uuid.lib odbc32.lib odbccp32.lib /nologo /subsystem:windows /pdb:none /debug /machine:I386 +# ADD LINK32 oldnames.lib kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib wsock32.lib /nologo /subsystem:console /debug /machine:I386 /out:"DebugDLL/tbl2asn.exe" /pdbtype:sept # SUBTRACT LINK32 /pdb:none - -!ENDIF - # Begin Target # Name "demo_tbl2asn - Win32 DebugDLL" diff --git a/make/msvc_prj/install.sh b/make/msvc_prj/install.sh index 1327c008..65d4a1fa 100644 --- a/make/msvc_prj/install.sh +++ b/make/msvc_prj/install.sh @@ -1,5 +1,5 @@ #! /bin/sh -# $Id: install.sh,v 1.36 2004/04/14 17:14:08 ivanov Exp $ +# $Id: install.sh,v 1.37 2004/07/20 18:07:06 ivanov Exp $ # Authors: Denis Vakatov (vakatov@ncbi.nlm.nih.gov) # Vladimir Ivanov (ivanov@ncbi.nlm.nih.gov) # Anton Lavrentiev (lavr@ncbi.nlm.nih.gov) @@ -94,6 +94,8 @@ makedir "$srcdir"/object makedir "$srcdir"/sequin makedir "$srcdir"/tools makedir "$srcdir"/vibrant +makedir "$srcdir"/util/creaders -p +makedir "$srcdir"/util/tables -p makedir "$bindir" -p makedir "$datdir" -p makedir "$errdir" -p @@ -160,6 +162,10 @@ cp -p "$builddir"/cn3d/*.c "$srcdir"/cn3d cp -p "$builddir"/cn3d/*.h "$incdir" cp -p "$builddir"/ddv/*.c "$srcdir"/ddv cp -p "$builddir"/ddv/*.h "$incdir" +cp -p "$builddir"/util/creaders/*.c "$srcdir"/util/creaders +cp -p "$builddir"/util/creaders/*.h "$incdir" +cp -p "$builddir"/util/tables/*.c "$srcdir"/util/tables +cp -p "$builddir"/util/tables/*.h "$incdir" # Copy network files diff --git a/make/msvc_prj/ncbi.dsw b/make/msvc_prj/ncbi.dsw index c4e3ad5a..609e57d4 100644 --- a/make/msvc_prj/ncbi.dsw +++ b/make/msvc_prj/ncbi.dsw @@ -36,6 +36,15 @@ Package=<4> Project_Dep_Name demo_asn2xml End Project Dependency Begin Project Dependency + Project_Dep_Name demo_asn2idx + End Project Dependency + Begin Project Dependency + Project_Dep_Name demo_asn2all + End Project Dependency + Begin Project Dependency + Project_Dep_Name demo_asn2fsa + End Project Dependency + Begin Project Dependency Project_Dep_Name demo_asndhuff End Project Dependency Begin Project Dependency @@ -272,6 +281,9 @@ Package=<4> Begin Project Dependency Project_Dep_Name demo_insdseqget End Project Dependency + Begin Project Dependency + Project_Dep_Name demo_formatrpsdb + End Project Dependency }}} ############################################################################### @@ -486,6 +498,66 @@ Package=<4> ############################################################################### +Project: "demo_asn2all"=.\demo\asn2all\demo_asn2all.dsp - Package Owner=<4> + +Package=<5> +{{{ +}}} + +Package=<4> +{{{ + Begin Project Dependency + Project_Dep_Name ncbiid1 + End Project Dependency + Begin Project Dependency + Project_Dep_Name netcli + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbitool + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbinacc + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbiobj + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbi + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbimain + End Project Dependency +}}} + +############################################################################### + +Project: "demo_asn2idx"=.\demo\asn2idx\demo_asn2idx.dsp - Package Owner=<4> + +Package=<5> +{{{ +}}} + +Package=<4> +{{{ + Begin Project Dependency + Project_Dep_Name ncbitool + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbinacc + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbiobj + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbi + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbimain + End Project Dependency +}}} + +############################################################################### + Project: "demo_asn2ff"=.\demo\asn2ff\demo_asn2ff.dsp - Package Owner=<4> Package=<5> @@ -513,6 +585,42 @@ Package=<4> ############################################################################### +Project: "demo_asn2fsa"=.\demo\asn2fsa\demo_asn2fsa.dsp - Package Owner=<4> + +Package=<5> +{{{ +}}} + +Package=<4> +{{{ + Begin Project Dependency + Project_Dep_Name ncbiid1 + End Project Dependency + Begin Project Dependency + Project_Dep_Name netcli + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbitool + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbinacc + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbiobj + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbi + End Project Dependency + Begin Project Dependency + Project_Dep_Name connect + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbimain + End Project Dependency +}}} + +############################################################################### + Project: "demo_asn2gb"=.\demo\asn2gb\demo_asn2gb.dsp - Package Owner=<4> Package=<5> @@ -612,6 +720,12 @@ Package=<5> Package=<4> {{{ Begin Project Dependency + Project_Dep_Name blast + End Project Dependency + Begin Project Dependency + Project_Dep_Name blastapi + End Project Dependency + Begin Project Dependency Project_Dep_Name ncbitool End Project Dependency Begin Project Dependency @@ -1440,6 +1554,36 @@ Package=<4> ############################################################################### +Project: "demo_formatrpsdb"=.\demo\formatrpsdb\demo_formatrpsdb.dsp - Package Owner=<4> + +Package=<5> +{{{ +}}} + +Package=<4> +{{{ + Begin Project Dependency + Project_Dep_Name blast + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbinacc + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbiobj + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbitool + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbi + End Project Dependency + Begin Project Dependency + Project_Dep_Name ncbimain + End Project Dependency +}}} + +############################################################################### + Project: "demo_gbseqget"=.\demo\gbseqget\demo_gbseqget.dsp - Package Owner=<4> Package=<5> @@ -1737,6 +1881,12 @@ Package=<5> Package=<4> {{{ Begin Project Dependency + Project_Dep_Name blast + End Project Dependency + Begin Project Dependency + Project_Dep_Name blastapi + End Project Dependency + Begin Project Dependency Project_Dep_Name ncbitool End Project Dependency Begin Project Dependency @@ -2271,6 +2421,9 @@ Package=<4> Project_Dep_Name ncbiobj End Project Dependency Begin Project Dependency + Project_Dep_Name connect + End Project Dependency + Begin Project Dependency Project_Dep_Name ncbi End Project Dependency Begin Project Dependency diff --git a/make/msvc_prj/object/ncbiobj.dsp b/make/msvc_prj/object/ncbiobj.dsp index d3269154..c9dad086 100644 --- a/make/msvc_prj/object/ncbiobj.dsp +++ b/make/msvc_prj/object/ncbiobj.dsp @@ -327,6 +327,10 @@ SOURCE=..\..\..\object\objsub.c # End Source File # Begin Source File +SOURCE=..\..\..\access\objtax3.c +# End Source File +# Begin Source File + SOURCE=..\..\..\object\objtseq.c # End Source File # Begin Source File @@ -419,6 +423,10 @@ SOURCE=..\..\..\api\subutil.c # End Source File # Begin Source File +SOURCE=..\..\..\access\tax3api.c +# End Source File +# Begin Source File + SOURCE=..\..\..\api\tofasta.c # End Source File # Begin Source File @@ -883,6 +891,10 @@ SOURCE=..\..\..\object\objsub.h # End Source File # Begin Source File +SOURCE=..\..\..\access\objtax3.h +# End Source File +# Begin Source File + SOURCE=..\..\..\object\objtseq.h # End Source File # Begin Source File @@ -971,6 +983,10 @@ SOURCE=..\..\..\asnstat\sugmap.h # End Source File # Begin Source File +SOURCE=..\..\..\access\tax3api.h +# End Source File +# Begin Source File + SOURCE=..\..\..\asnstat\taxon1.h # End Source File # Begin Source File diff --git a/make/msvc_prj/one2all.sh b/make/msvc_prj/one2all.sh new file mode 100755 index 00000000..9cc22f1a --- /dev/null +++ b/make/msvc_prj/one2all.sh @@ -0,0 +1,762 @@ +#! /bin/sh +# +# $Id: one2all.sh,v 1.40 2003/10/23 16:02:07 ucko Exp $ +# =========================================================================== +# +# PUBLIC DOMAIN NOTICE +# National Center for Biotechnology Information +# +# This software/database is a "United States Government Work" under the +# terms of the United States Copyright Act. It was written as part of +# the author's official duties as a United States Government employee and +# thus cannot be copyrighted. This software/database is freely available +# to the public for use. The National Library of Medicine and the U.S. +# Government have not placed any restriction on its use or reproduction. +# +# Although all reasonable efforts have been taken to ensure the accuracy +# and reliability of the software and data, the NLM and the U.S. +# Government do not and cannot warrant the performance or results that +# may be obtained by using this software or data. The NLM and the U.S. +# Government disclaim all warranties, express or implied, including +# warranties of performance, merchantability or fitness for any particular +# purpose. +# +# Please cite the author in any work or product based on this material. +# +# =========================================================================== +# +# Author: Anton Lavrentiev +# +# MSVC project file converter. Expand a signle configuration project file +# to multi-configuration project file. +# +# =========================================================================== + +readfirstln() { + cat $1 | while read p; do + test -z "$p" && continue + echo "$p" + break + done +} + +config() { + # Argument checking first. + # + if [ _$1 = _--without-dizzy ]; then + dizzy='no' + shift + else + dizzy='yes' + fi + if [ _$1 = _ -o \! -f $1 ]; then + echo "ERROR: File \"$1\" inexistent. Stop." + return 3 + fi + if [ _$2 != _Debug -a _$2 != _Release ]; then + echo "ERROR: Unknown release parameter \"$2\". Stop." + return 3 + fi + DEBUG=$2 + if [ _$3 = _ ]; then + CFG="/ML" + elif [ $3 = MT ]; then + CFG="/MT" + elif [ $3 = DLL ]; then + CFG="/MD" + else + echo "ERROR: Unknown configuration \"$3\". Stop." + return 3 + fi + SFX="$3" + + # Our config is ${DEBUG}${SFX}. Compiler switch is ${CFG}. + # + if [ $DEBUG = Debug ]; then + CFG="${CFG}d" + fi + + # Init the sed script, which will make conversion. + # + cat /dev/null >/tmp/$$_cmd.sed + + # First replace config name wherever appropriate. + # + for p in Release Debug ; do + for q in DLL MT ; do + cat <<-EOF >>/tmp/$$_cmd.sed + /^# PROP / !s|$p$q|$p|g + /^# PROP .*"[^ ]*$p$q[^ ]*"/ s|$p$q|$p|g + EOF + done + if [ $p != $DEBUG$SFX ]; then + cat <<-EOF >>/tmp/$$_cmd.sed + /^# PROP / !s|$p|$DEBUG$SFX|g + /^# PROP .*"[^ ]*$p[^ ]*"/ s|$p|$DEBUG$SFX|g + EOF + fi + done + + # Replace debugging macro. + # + if [ $DEBUG = Debug ]; then + echo 's|NDEBUG|_DEBUG|g' >>/tmp/$$_cmd.sed + else + echo 's|_DEBUG|NDEBUG|g' >>/tmp/$$_cmd.sed + fi + + # Does the project use wxWindows (or is a part of wxWindows)? + # + if [ `grep -c '^# ADD .*CPP .*__WXDEBUG__' $1` != 0 -o \ + `grep -c '^# ADD .*CPP .*__WXMSW__' $1` != 0 -o \ + `grep -c '^# ADD .*CPP .*WX.\\{2,3\\}INGDLL' $1` != 0 ]; then + GUI="wxwin" + + # Flag proper macros for DLL mode. + # + if [ _$SFX = _DLL ]; then + if [ `grep -c '^# ADD .*CPP .*/D *["]\\{0,1\\}WXMAKINGDLL=*[0-9]*["]\\{0,1\\}' $1` != 0 ]; then + WXDLL='/D "WXMAKINGDLL=1"' + else + WXDLL='/D "WXUSINGDLL=1"' + fi + else + WXDLL="" + fi + + # Is this an FLTK-dependent project? + # + elif [ `grep -c '^# ADD .*LINK32 .*fltk[a-z]*[.]lib' $1` != 0 ]; then + GUI="fltk" + else + GUI="" + fi + + # Either replace with hooks, or just remove the compiler switches, + # which may be configuration-dependent or inconsistent. + # + cat <<-EOF >>/tmp/$$_cmd.sed + /^# ADD .*CPP / { + s| */O[0-9A-Za-z]*| @O| + s| */O[0-9A-Za-z]*||g + s| */Gm||g + s| */GZ||g + s| */FR||g + s| */Fr||g + s| */c| @c| + s| */c||g + s| */ZI| @Z| + s| */ZI||g + s| */Zi| @Z| + s| */Zi||g + s| */Z7| @Z| + s| */Z7||g + s| */D *"\{0,1\}DEBUG=*[0-9]*"\{0,1\}| @D|g + EOF + + # Remove some wxWindows macros, which are surely configuration-dependent. + # + if [ "$GUI" = "wxwin" ]; then + cat <<-EOF >>/tmp/$$_cmd.sed + s| */D *["]\\{0,1\\}__WXDEBUG__=*[0-9]*["]\\{0,1\\}||g + s| */D *["]\\{0,1\\}WXUSINGDLL=*[0-9]*["]\\{0,1\\}||g + s| */D *["]\\{0,1\\}WXMAKINGDLL=*[0-9]*["]\\{0,1\\}||g + EOF + fi + + # Clear the linker debug option. + # + cat <<-EOF >>/tmp/$$_cmd.sed + } + /^# ADD .*LINK32 / s| */debug||g + EOF + + # When requested, remove include/library paths, which refer to DIZZY. + # + if [ "$dizzy" = "no" ]; then + cat <<-EOF >>/tmp/$$_cmd.sed + /^# ADD .*CPP / s| */I *["]\\{0,1\\}\\\\\\\\[Dd][Ii][Zz][Zz][Yy]\\\\[^ ]*||g + /^# ADD .*RSC / s| */i *["]\\{0,1\\}\\\\\\\\[Dd][Ii][Zz][Zz][Yy]\\\\[^ ]*||g + /^# ADD .*LINK32 / s| */libpath:["]\\{0,1\\}\\\\\\\\[Dd][Ii][Zz][Zz][Yy]\\\\[^ ]*||g + EOF + fi + + # Configuration-dependent changes: replace hooks and + # add more compiler options where appropriate. + # + if [ $DEBUG = Debug ]; then + cat <<-EOF >>/tmp/$$_cmd.sed + /^# PROP / s| *Use_Debug_Libraries *0| Use_Debug_Libraries 1| + /^# ADD .*LINK32 / { + s| */pdb:[^ ]*||g + s|/mach|/pdb:none /debug &| + } + /^# ADD .*CPP / { + s|@O|/Od| + s|@Z|/Z7| + s| @Z||g + s|/W[^ ]*|& /Gm| + s|@c|/GZ /c| + s|@D|/D "DEBUG=1"| + s| @D||g + EOF + else + cat <<-EOF >>/tmp/$$_cmd.sed + /^# PROP / s| *Use_Debug_Libraries *1| Use_Debug_Libraries 0| + /^# ADD .*LINK32 / s| */pdbtype[^ ]*||g + /^# ADD .*CPP / { + s|@O|/O2| + s| @Z||g + s|@c|/c| + s| @D||g + EOF + fi + + # Now replace the code generation switch. + # + for p in "/MD" "/ML" "/MT" ; do + cat <<-EOF >>/tmp/$$_cmd.sed + s| *${p}d| $p|g + s| $p| @C|g + EOF + done + + # Finish with code generation switch, and then make sure + # that incremental linking is on except for wxWindows DLLs (slow). + # + cat <<-EOF >>/tmp/$$_cmd.sed + t cfgrst + :cfgrst + s|@C|$CFG| + t cfgokay + s|/nologo|& $CFG| + t cfgokay + s| CPP|& $CFG| + :cfgokay + s| @C||g + } + /^# ADD .*LINK32 / s| */incremental[:yesno]*||g + EOF + if [ `grep -c '^# ADD .*LINK32 .*/dll' $1` = 0 ]; then + INCRLNK='yes' + elif [ -n "$GUI" -a `echo "$WXDLL" | grep -c '^# ADD .*CPP .*WXMAKINGDLL'` != 0 ]; then + INCRLNK='no' + else + INCRLNK="" + fi + test "$INCRLNK" = "yes" -a $DEBUG != Debug && INCRLNK='no' + if [ -n "$INCRLNK" ]; then + echo "/^# ADD .*LINK32 / s|/nologo|& /incremental:$INCRLNK|" >>/tmp/$$_cmd.sed + fi + + # wxWindows-specific changes from now on. + # + if [ "$GUI" = "wxwin" ]; then + # Define __WXDEBUG__ for debug configs. + # + if [ $DEBUG = Debug ]; then + WXDEBUG='/D "__WXDEBUG__=1"' + else + WXDEBUG="" + fi + + # ${WX} is to be added to compiler options. + # + WX=`echo $WXDEBUG $WXDLL` + + if [ -n "$WX" ]; then + cat <<-EOF >>/tmp/$$_cmd.sed + /^# ADD .*CPP / { + t reset + :reset + s|/Y|$WX &| + t success + s|/D|$WX &| + t success + s|/c|$WX &| + t success + s| *\$| $WX| + :success + } + EOF + fi + + # Enforce /subsystem:windows. + # + cat <<-EOF >>/tmp/$$_cmd.sed + /^# ADD .*LINK32 / s|/subsystem:[A-Za-z]*|@s|g + /^# ADD LINK32 / { + t wxlrst + :wxlrst + s|@s|/subsystem:windows| + t wxlcnt + s|/nologo|& /subsystem:windows| + t wxlcnt + s|\$| /subsystem:windows| + :wxlcnt + } + /^# ADD .*LINK32 / s| *@s||g + EOF + + # Take care of libraries: remove all wxWindows ones + # + cat <<-EOF >>/tmp/$$_cmd.sed + /^# ADD .*LINK32 .*wx[dl]\\{0,1\\}[.]lib/ { + s/ *jpegd\\{0,1\\}[.]lib//g + s/ *pngd\\{0,1\\}[.]lib//g + s/ *tiffd\\{0,1\\}[.]lib//g + s/ *xpmd\\{0,1\\}[.]lib//g + s/ *zlibd\\{0,1\\}[.]lib//g + s/ *wx[dl]\\{0,1\\}[.]lib/ @wx/g + EOF + + # Insert them back but with correct names (which we use). + # Note that in DLL mode only one (import) library has to be included. + # The note above was true formely; now images libs are all static. + # + #if [ _$SFX != _DLL ]; then + cat <<-EOF >>/tmp/$$_cmd.sed + s/@wx/jpeg.lib png.lib tiff.lib zlib.lib wx.lib/ + EOF + #else + # cat <<-EOF >>/tmp/$$_cmd.sed + # s/@wx/wx.lib/ + # EOF + #fi + cat <<-EOF >>/tmp/$$_cmd.sed + s/ @wx//g + } + EOF + fi + + # FLTK specific changes from now on + # + if [ "$GUI" = "fltk" ]; then + # Enforce /subsystem:windows. + # + cat <<-EOF >>/tmp/$$_cmd.sed + /^# ADD .*LINK32 / s|/subsystem:[A-Za-z]*|@s|g + /^# ADD LINK32 / { + t fllrst + :fllrst + s|@s|/subsystem:windows| + t fllcnt + s|/nologo|& /subsystem:windows| + t fllcnt + s|\$| /subsystem:windows| + :fllcnt + } + /^# ADD .*LINK32 / s| *@s||g + EOF + + # Take care of libraries: remove all FLTK ones + # + cat <<-EOF >>/tmp/$$_cmd.sed + /^# ADD .*LINK32 * fltk[a-z]*[.]lib/ { + s/ *fltk[a-z]*[.]lib/ @fltk/g + EOF + + # Insert them back but with correct names (which we use). + # Note that in DLL mode only one (import) library has to be included. + # + #if [ _$SFX != _DLL ]; then + # cat <<-EOF >>/tmp/$$_cmd.sed + # s/@fltk/fltkforms.lib fltkimages.lib fltkgl.lib fltk.lib/ + # EOF + #else + cat <<-EOF >>/tmp/$$_cmd.sed + s/@fltk/fltkdll.lib/ + EOF + #fi + cat <<-EOF >>/tmp/$$_cmd.sed + s/ @fltk//g + } + EOF + fi + + # Print name of configuration, which was created, and run the script. + # + echo "${DEBUG}${SFX}" ${GUI:+"("$GUI")"} + + sed -f /tmp/$$_cmd.sed $1 >/tmp/$$_new + cp -f /tmp/$$_new $1 + rm -f /tmp/$$_cmd.sed /tmp/$$_new + + return 0 +} + +configcb() +{ + cat /dev/null >/tmp/$$_cmd.sed + + # First replace config name wherever appropriate. + # + for p in Release Debug ; do + for q in DLL MT ; do + cat <<-EOF >>/tmp/$$_cmd.sed + s|$p *$q|$p|g + EOF + done + if [ $p != $2$3 ]; then + cat <<-EOF >>/tmp/$$_cmd.sed + s|$p|$2$3|g + EOF + fi + done + sed -f /tmp/$$_cmd.sed $1 + rm -f /tmp/$$_cmd.sed +} + +usage() { + echo 'Automatic multi config for Microsoft Visual C++ Project File V 6.0' + echo 'Usage:' + echo `basename $0` '[--without-dizzy] filename' + exit 1 +} + +if [ _$1 = _--without-dizzy ]; then + without_dizzy="$1" + shift +else + without_dizzy="" +fi + +if [ _$1 = _ ]; then + usage +elif [ \! -f $1 ]; then + echo "ERROR: File \"$1\" must exist. Stop." + exit 3 +fi + +if [ _$2 != _ ]; then + if [ $2 != 4 -a $2 != 3 -a $2 != 2 ]; then + echo "ERROR: Unknown special parameter \"$2\". Stop." + exit 3 + fi + if [ $2 = 2 ]; then + CFGSET='DLL' + elif [ $2 = 3 ]; then + CFGSET='MT' + else + CFGSET='DLL ""' + fi +else + CFGSET='DLL MT ""' +fi +file=/tmp/$$_file + +# DOS-2-UNIX conversion (shouldn't be here, but just in case for sanity). +# +sed -e 's/
*$//' $1 >$file + +# Check signature. +# +cat <<-"EOF" >/tmp/$$_genusign + # Microsoft Developer Studio Project File + # Microsoft Developer Studio Generated Build File, Format Version 6.00 + # ** DO NOT EDIT ** + + # TARGTYPE + EOF +cat /dev/null >/tmp/$$_filesign +head -1 $file | sed -e 's/ -.*//' >>/tmp/$$_filesign +head -3 $file | tail +2 >>/tmp/$$_filesign +head -5 $file | tail +4 | sed -e 's/ *".*$//' >>/tmp/$$_filesign +diff /tmp/$$_filesign /tmp/$$_genusign >/dev/null 2>&1 +exit=$? +rm -f /tmp/$$_filesign /tmp/$$_genusign +if [ $exit != 0 ]; then + echo "ERROR: $1 doesn't look like MSVC++ Project File. Stop." + rm -f $file + exit 2 +fi + +# Extract configuration part of the project file and count configurations. +# +cat <<-EOF >/tmp/$$_.sed + /^!IF /,/^!ENDIF/ { + /^!ENDIF/ q + p + } + d + EOF +NCFG=`sed -n -f /tmp/$$_.sed $file | egrep -c '^[!ELS]+IF '` +rm -f /tmp/$$_.sed +if [ $NCFG -gt 1 ]; then + echo "ERROR: $1 contains more than one configuration ($NCFG). Stop." + rm -f $file + exit 2 +fi + +# Check for per-config dependencies, and warn if any. +# +DEP=`grep -c '^# PROP *AllowPerConfigDependencies *1' $file` +cat <<-EOF >/tmp/$$_prop.sed + /^# Begin Target/,\$ p + d + EOF +sed -n -f /tmp/$$_prop.sed $file | grep '^!IF ' >/dev/null 2>&1 +if [ $DEP != 0 -a $? = 0 ]; then + echo "WARNING: $1 contains per-configuration dependencies," + echo 'which may or may not be handled correctly by this script.' +fi +rm -f /tmp/$$_prop.sed + +# Extract beginning of the file. +# +cat <<-EOF >/tmp/$$_head.sed + /^!MESSAGE "/ { + w /tmp/$$_cmp + q + } + p + d + EOF +sed -n -f /tmp/$$_head.sed $file >/tmp/$$_head +rm -f /tmp/$$_head.sed +config /tmp/$$_head Release `echo $CFGSET | sed -e 's| .*||'` >/dev/null 2>&1 +sed -e 's/ "/ %/' -e 's/" /% /' /tmp/$$_cmp >/tmp/$$_comp +mv /tmp/$$_comp /tmp/$$_cmp + +# Extract the middle part. +# +cat <<-EOF >/tmp/$$_mid.sed + /^# Begin Project/,/^!IF / { + /^# PROP *AllowPerConfigDependencies / s/ *1/ 0/ + /^!IF / q + /^# PROP BASE / { + i\\ + + q + } + p + } + d + EOF +sed -n -f /tmp/$$_mid.sed $file >/tmp/$$_mid +rm -f /tmp/$$_mid.sed + +# Now extract configuration-dependent part, and make required configs. +# +cat <<-EOF >/tmp/$$_cut.sed + /^!IF /,/^!E/ { + s/^!ELSEIF .*\$/!ENDIF / + H + } + /^!ENDIF/ { + x + q + } + d + EOF +sed -n -f /tmp/$$_cut.sed $file >/tmp/$$_cfgtmpl +if [ \! -s /tmp/$$_cfgtmpl ]; then + cat <<-EOF >/tmp/$$_cut.sed + /^# PROP BASE /,/^# Begin Target/ { + /# Begin Target/ q + p + } + d + EOF + echo "!IF \"\$(CFG)\" == \"`sed -e 's/^.* %//' -e 's/% .*\$//' /tmp/$$_cmp`\"" >/tmp/$$_cfgtmpl + echo >>/tmp/$$_cfgtmpl + sed -n -f /tmp/$$_cut.sed $file >>/tmp/$$_cfgtmpl + echo >>/tmp/$$_cfgtmpl + echo '!ENDIF ' >>/tmp/$$_cfgtmpl +fi +rm -f /tmp/$$_cut.sed +cat /dev/null >/tmp/$$_title +cat /dev/null >/tmp/$$_cfg +cat /dev/null >/tmp/$$_message +for i in Release Debug ; do + for j in $CFGSET ; do + if [ $j = '""' ]; then + j="" + fi + cp /tmp/$$_cfgtmpl /tmp/$$_cfg_$i$j + config $without_dizzy /tmp/$$_cfg_$i$j $i $j >>/tmp/$$_message + if [ $? != 0 ]; then + tail -1 /tmp/$$_message + rm -f /tmp/$$_* + exit 3 + fi + grep '^!IF ' /tmp/$$_cfg_$i$j >>/tmp/$$_title + cat /tmp/$$_cfg_$i$j >>/tmp/$$_cfg + rm -f /tmp/$$_cfg_$i$j + done +done +echo "${1}:" `cat /tmp/$$_message` +rm -f /tmp/$$_cfgtmpl /tmp/$$_message + +# Summarize configurations in the header and tail parts of the project. +# +sed -e 's/^!IF.*CFG)" == //' -e 'y/ "/~%/' /tmp/$$_title >/tmp/$$_tlt +mv /tmp/$$_tlt /tmp/$$_title +cat /dev/null >/tmp/$$_msg +cat /dev/null >/tmp/$$_name +for i in `cat /tmp/$$_title` ; do + sed -e "s/ %.*% / $i /" -e 'y/~%/ "/' /tmp/$$_cmp >>/tmp/$$_msg + echo "# Name $i" | tr '~%' ' "' >>/tmp/$$_name +done +sed -e 's/ .*$/ /' /tmp/$$_cmp >>/tmp/$$_msg +echo >>/tmp/$$_msg +rm -f /tmp/$$_title + +# Extract the tail part and modify name list on-the-fly. +# +cat <<-EOF >/tmp/$$_tail.sed + /^# Begin Target/,/^# End Project/ { + /^# Name / { + r /tmp/$$_name + d + } + /^!IF /,/^!ENDIF/ d + p + } + d + EOF +sed -n -f /tmp/$$_tail.sed $file >/tmp/$$_tail +rm -f /tmp/$$_tail.sed /tmp/$$_name $file + +# Glue all parts but the tail. +# +cat /tmp/$$_head /tmp/$$_msg /tmp/$$_mid /tmp/$$_cfg >/tmp/$$_newhead +mv /tmp/$$_newhead /tmp/$$_head +rm -f /tmp/$$_msg /tmp/$$_mid /tmp/$$_cfg + +# Replace ENDIF..IF with ELSEIF. +# +cat <<-EOF >/tmp/$$_elseif.sed + /^!ENDIF/,/^!IF / { + s/^!IF /!ELSEIF / + /^!ELSEIF / !d + } + EOF +sed -f /tmp/$$_elseif.sed /tmp/$$_head >/tmp/$$_newhead +rm -f /tmp/$$_elseif.sed +mv /tmp/$$_newhead /tmp/$$_head +cat <<-EOF >>/tmp/$$_head + !ENDIF + + EOF + +grep '^SOURCE=' $1 | sed 's/^SOURCE=//;s/[\\]/\\\\/g;s/[.]/[.]/g' >/tmp/$$_flist + +for i in `cat /tmp/$$_flist | sed 's/[[]//g;s/]//g'`; do + file="/tmp/$$_`echo $i | sed 's/[./\\]/_/g'`" + cat <<-EOF >/tmp/$$_cbext.sed + /^SOURCE=$i\$/,/^SOURCE=/ { + /^SOURCE=$i\$/ d + /^[#] End Source File/ !H + /^!ENDIF/ { + x + q + } + /^[#] End Custom Build/ { + x + q + } + d + } + d + EOF + sed -f /tmp/$$_cbext.sed $1 >$file +done +rm -f /tmp/$$_cbext.sed + +cat /dev/null >/tmp/$$_cb.sed +for k in `cat /tmp/$$_flist | sed 's/[[]//g;s/]//g'`; do + file="/tmp/$$_`echo $k | sed 's/[./\\]/_/g'`" + test -s $file || continue + if [ `readfirstln $file | grep -c '^[!]'` = 0 ]; then + echo "!IF \"\$(CFG)\" == \"`sed -e 's/^.* %//' -e 's/% .*\$//' /tmp/$$_cmp`\"" >$file.1 + echo >>$file.1 + cat $file >>$file.1 + echo >>$file.1 + echo '!ENDIF ' >>$file.1 + mv $file.1 $file + fi + cat /dev/null >$file.new + for i in Release Debug ; do + for j in $CFGSET ; do + if [ $j = '""' ]; then + j="" + fi + configcb $file $i $j >>$file.new + done + done + echo >$file + + # Replace ENDIF..IF with ELSEIF. + # + cat <<-EOF >/tmp/$$_elseif.sed + /^!ENDIF/,/^!IF / { + s/^!IF /!ELSEIF / + /^!ELSEIF / !d + } + EOF + sed -f /tmp/$$_elseif.sed $file.new >>$file + rm -f /tmp/$$_elseif.sed $file.new + cat <<-EOF >>$file + !ENDIF + + EOF + cat <<-EOF >>/tmp/$$_cb.sed + /^SOURCE=$k\$/,/^[#] End Source File/ { + /^SOURCE=$k\$/ { + p + r $file + d + } + /^[#] End Source File/ p + d + } + EOF +done + +sed -f /tmp/$$_cb.sed /tmp/$$_tail >/tmp/$$_tail.1 + +# Final catenation of results to a single project file. +# +cat /tmp/$$_head /tmp/$$_tail.1 >/tmp/$$_proj +rm -f /tmp/$$_cmp /tmp/$$_head /tmp/$$_tail /tmp/$$_tail.1 /tmp/$$_cb.sed +for i in `cat /tmp/$$_flist | sed 's/[[]//g;s/]//g'`; do + file="/tmp/$$_`echo $i | sed 's/[./\\]/_/g'`" + rm -f $file +done +rm -f /tmp/$$_flist + +# Remove consequent empty lines (could occur earlier in substitutions) +# and replace original project file (backup kept in .bak). +# Make the output file to be a DOS (CR/LF) text file. +# +cat <<-EOF >/tmp/$$_pretty.sed + /./ { + p + d + } + /^\$/ p + :Empty + /^\$/ { + N + s/.// + b Empty + } + p + EOF +mv $1 $1.bak + +PATH=$PATH:/usr/sbin:/sbin +doser='sed -e s/$/
/' +if [ `echo $OSTYPE 2>&1 | grep -c -i cygwin` -ge 1 -o \ + `echo $MACHTYPE 2>&1 | grep -c -i cygwin` -ge 1 -o \ + `mount 2>&1 | grep -c -i cygwin` -ge 1 ]; then + echo >$1 + test "`ls -l $1 | tr '\t' ' ' | sed 's/ */ /g' | cut -f5 -d' '`" != "1" && \ + doser='sed -n p' +fi +sed -n -f /tmp/$$_pretty.sed /tmp/$$_proj | $doser >$1 +rm -f /tmp/$$_pretty.sed /tmp/$$_proj +touch -r $1.bak $1 + +exit 0 diff --git a/make/msvc_prj/one2all_r.sh b/make/msvc_prj/one2all_r.sh new file mode 100755 index 00000000..80c819aa --- /dev/null +++ b/make/msvc_prj/one2all_r.sh @@ -0,0 +1,60 @@ +#! /bin/sh +# +# $Id: one2all_r.sh,v 1.1 2003/08/05 18:23:23 lavr Exp $ +# =========================================================================== +# +# PUBLIC DOMAIN NOTICE +# National Center for Biotechnology Information +# +# This software/database is a "United States Government Work" under the +# terms of the United States Copyright Act. It was written as part of +# the author's official duties as a United States Government employee and +# thus cannot be copyrighted. This software/database is freely available +# to the public for use. The National Library of Medicine and the U.S. +# Government have not placed any restriction on its use or reproduction. +# +# Although all reasonable efforts have been taken to ensure the accuracy +# and reliability of the software and data, the NLM and the U.S. +# Government do not and cannot warrant the performance or results that +# may be obtained by using this software or data. The NLM and the U.S. +# Government disclaim all warranties, express or implied, including +# warranties of performance, merchantability or fitness for any particular +# purpose. +# +# Please cite the author in any work or product based on this material. +# +# =========================================================================== +# +# Author: Anton Lavrentiev +# +# MSVC project file recursive converter that converts single-config files +# into multiple config files on the entire subtree. +# +# =========================================================================== + +usage() { + echo 'Automatic single config for Microsoft Visual C++ Project File V 6.0' + echo 'Usage:' + echo `basename $0` '[--without-dizzy]' + exit 1 +} + +if [ _$1 = _--without-dizzy ]; then + without_dizzy="$1" + shift +else + without_dizzy="" +fi + +if [ "$1" = "--help" -o "$1" = "-h" -o "$1" = "-?" ]; then + usage +fi + +dir=`dirname $0` + +if [ \! -x ${dir:-.}/one2all.sh ]; then + echo "ERROR: Script \"${dir:-.}/one2all.sh\" not found. Stop." + exit 3 +fi + +find . -name "*.dsp" -exec ${dir:-.}/one2all.sh $without_dizzy {} \; diff --git a/make/msvc_prj/one2one.sh b/make/msvc_prj/one2one.sh new file mode 100755 index 00000000..7d22db47 --- /dev/null +++ b/make/msvc_prj/one2one.sh @@ -0,0 +1,107 @@ +#! /bin/sh +# +# $Id: one2one.sh,v 1.10 2003/08/22 15:33:10 lavr Exp $ +# =========================================================================== +# +# PUBLIC DOMAIN NOTICE +# National Center for Biotechnology Information +# +# This software/database is a "United States Government Work" under the +# terms of the United States Copyright Act. It was written as part of +# the author's official duties as a United States Government employee and +# thus cannot be copyrighted. This software/database is freely available +# to the public for use. The National Library of Medicine and the U.S. +# Government have not placed any restriction on its use or reproduction. +# +# Although all reasonable efforts have been taken to ensure the accuracy +# and reliability of the software and data, the NLM and the U.S. +# Government do not and cannot warrant the performance or results that +# may be obtained by using this software or data. The NLM and the U.S. +# Government disclaim all warranties, express or implied, including +# warranties of performance, merchantability or fitness for any particular +# purpose. +# +# Please cite the author in any work or product based on this material. +# +# =========================================================================== +# +# Author: Anton Lavrentiev +# +# MSVC project file converter. Change configuration in a +# single configuration project file. +# +# =========================================================================== + +usage() { + echo 'Automatic single config for Microsoft Visual C++ Project File V 6.0' + echo 'Usage:' + echo `basename $0` '[--without-dizzy] filename config' + exit 1 +} + +if [ _$1 = _--without-dizzy ]; then + without_dizzy="$1" + shift +else + without_dizzy="" +fi + +if [ _$1 = _ -o _$2 = _ ]; then + usage +elif [ \! -f $1 ]; then + echo "ERROR: File \"$1\" must exist. Stop." + exit 3 +fi + +dir=`dirname $0` + +if [ \! -x ${dir:-.}/all2one.sh ]; then + echo "ERROR: Script \"${dir:-.}/all2one.sh\" not found. Stop." + exit 3 +fi + +if [ \! -x ${dir:-.}/one2all.sh ]; then + echo "ERROR: Script \"${dir:-.}/one2all.sh\" not found. Stop." + exit 3 +fi + +file=/tmp/$$_file +cp -f $1 $file + +${dir:-.}/one2all.sh $without_dizzy $file </dev/null >/tmp/$$_list 2>&1 +exit=$? +if [ `head -1 /tmp/$$_list | grep -c 'ERROR'` != 0 ]; then + cat /tmp/$$_list | sed -e "s|$file|$1|g" + rm -f /tmp/$$_list $file + exit $exit +fi +rm -f $file.bak + +${dir:-.}/all2one.sh $file $2 </dev/null >/tmp/$$_list 2>&1 +if [ `tail -1 /tmp/$$_list | grep -c 'ERROR'` != 0 ]; then + cat /tmp/$$_list | sed -e "s|$file|$1|g" + rm -f /tmp/$$_list $file + exit $exit +fi +rm -f $file.bak + +echo "${1}:" Configured \ +\"\ +`tail -1 /tmp/$$_list | sed -e 's|^.* "||' -e 's|" .*\$||'`\ +\" +mv -f $1 $1.bak + +PATH=$PATH:/usr/sbin:/sbin +doser='sed -e s/$/
/' +if [ `echo $OSTYPE 2>&1 | grep -c -i cygwin` -ge 1 -o \ + `echo $MACHTYPE 2>&1 | grep -c -i cygwin` -ge 1 -o \ + `mount 2>&1 | grep -c -i cygwin` -ge 1 ]; then + echo >$1 + test "`ls -l $1 | tr '\t' ' ' | sed 's/ */ /g' | cut -f5 -d' '`" != "1" && \ + doser='sed -n p' +fi +$doser $file >$1 +rm -f $file /tmp/$$_list +touch -r $1.bak $1 + +exit 0 diff --git a/make/msvc_prj/tools/ncbitool.dsp b/make/msvc_prj/tools/ncbitool.dsp index bb060556..1dc9c4e9 100644 --- a/make/msvc_prj/tools/ncbitool.dsp +++ b/make/msvc_prj/tools/ncbitool.dsp @@ -107,6 +107,10 @@ SOURCE=..\..\..\tools\blastutl.c # End Source File # Begin Source File +SOURCE=..\..\..\tools\blfmtutl.c +# End Source File +# Begin Source File + SOURCE=..\..\..\tools\bxmlobj.c # End Source File # Begin Source File @@ -367,6 +371,10 @@ SOURCE=..\..\..\tools\blastpri.h # End Source File # Begin Source File +SOURCE=..\..\..\tools\blfmtutl.h +# End Source File +# Begin Source File + SOURCE=..\..\..\tools\blstxml.h # End Source File # Begin Source File diff --git a/make/packApps.met b/make/packApps.met index d6355a3a..57984d96 100644 --- a/make/packApps.met +++ b/make/packApps.met @@ -16,8 +16,8 @@ with timeout of 600 seconds end if end repeat repeat with f in pApps2Pack - if not (exists file (gProjectsDir & f)) then - error "Carbon Application " & (gProjectsDir & f) & return & " does not exist." + if not (exists file (gProjectsDir & f & "OS9")) then + error "Carbon Application " & (gProjectsDir & f & "OS9") & return & " does not exist." end if if not (exists file (gProjectsDir & f & "OSX.app")) then error "Mach-O Application " & (gProjectsDir & f & "OSX.app") & return & " does not exist." @@ -63,7 +63,7 @@ with timeout of 600 seconds duplicate file (gDistribRoot & "doc:sequin.htm") to gArchiveFolder repeat with ap in pApps2Pack - move file (gProjectsDir & ap) to gArchiveFolder + move file (gProjectsDir & ap & "OS9") to gArchiveFolder move file (gProjectsDir & ap & "OSX.app") to gArchiveFolder end repeat @@ -132,12 +132,14 @@ on MWRootDir() gStartupDisk & "Applications (Mac OS 9):", gHomeDir, gHomeDir & "Applications:", Â gHomeDir & "Applications:", gHomeDir & "AppsLocal (Mac OS 9):"} repeat with mwVersion from 8 to 9 - set dirName to "Metrowerks CodeWarrior " & mwVersion & ".0" - repeat with mwLoc in mwLocations - try - set mwRoot to ResolveAlias(mwLoc & dirName) - return mwRoot - end try + repeat with mwSubVersion from 0 to 5 + set dirName to "Metrowerks CodeWarrior " & mwVersion & "." & mwSubVersion + repeat with mwLoc in mwLocations + try + set mwRoot to ResolveAlias(mwLoc & dirName) + return mwRoot + end try + end repeat end repeat end repeat diff --git a/make/readme.unx b/make/readme.unx index f5dbfa82..745a7ef8 100644 --- a/make/readme.unx +++ b/make/readme.unx @@ -142,8 +142,6 @@ mv asn.h ../include ./ln-if-absent ../asnlib/*.c . ./ln-if-absent ../connect/*.c . ./ln-if-absent ../connect/*.h ../include -./ln-if-absent ../connect/lbapi/*.c . -./ln-if-absent ../connect/lbapi/*.h ../include ./ln-if-absent ../object/*.c . ./ln-if-absent ../object/*.h ../include ./ln-if-absent ../access/*.c . @@ -248,11 +246,9 @@ cc -fast -c -I../include -DWIN_MOTIF connutil.c cc -fast -c -I../include -DWIN_MOTIF con_url.c cc -fast -c -I../include -DWIN_MOTIF con_sock.c cc -fast -c -I../include -DWIN_MOTIF urlquery.c -cc -fast -c -I../include -DWIN_MOTIF lbapi.c -cc -fast -c -I../include -DWIN_MOTIF con_stateless.c cc -fast -c -I../include -DWIN_MOTIF binary.c rm -f libncbi.a -ar cru libncbi.a ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbimain.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o ncbisock.o ncbi_socket.o matrix.o ncbibuf.o ncbi_buffer.o connectn.o connutil.o con_url.o con_sock.o urlquery.o lbapi.o con_stateless.o binary.o +ar cru libncbi.a ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbimain.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o ncbisock.o ncbi_socket.o matrix.o ncbibuf.o ncbi_buffer.o connectn.o connutil.o urlquery.o binary.o cp -p libncbi.a ../lib ls -l ../lib/libncbi.a -rw-r--r-- 1 coremake ncbi 827962 Jan 31 14:11 ../lib/libncbi.a @@ -1003,5 +999,5 @@ Good luck! ======================================================================= - $Id: readme.unx,v 6.17 2001/12/12 20:37:50 beloslyu Exp $ + $Id: readme.unx,v 6.18 2004/09/28 15:11:48 lavr Exp $ ======================================================================= diff --git a/make/xCode/NCBI.xcode/project.pbxproj b/make/xCode/NCBI.xcode/project.pbxproj new file mode 100644 index 00000000..b04d211d --- /dev/null +++ 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