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authorAaron M. Ucko <ucko@debian.org>2005-03-24 17:57:54 +0000
committerAaron M. Ucko <ucko@debian.org>2005-03-24 17:57:54 +0000
commit9dd1ccc4b3f1bac2a7dda6ff84c690c05aaca0af (patch)
tree90701a363bcd56ba5c0cfc0a82a3a1b1aad2b29c /network
parentf22906b4b2a6ff3f8a318fec92d95baf9e9965a6 (diff)
Load ncbi (6.1.20040505) into ncbi-tools6/branches/upstream/current.
Diffstat (limited to 'network')
-rw-r--r--network/blast3/client/.NETBLAST_VERSION1
-rw-r--r--network/id1arch/accid1.c11
-rw-r--r--network/id1arch/idfetch.c52
-rw-r--r--network/id2arch/id2.asn317
-rw-r--r--network/id2arch/id2.c4563
-rw-r--r--network/id2arch/id2.h797
-rw-r--r--network/id2arch/id2gen.h730
-rw-r--r--network/id2arch/id2map.h19
-rw-r--r--network/id2arch/id2sgen.c3345
-rw-r--r--network/id2arch/id2sgen.h415
-rw-r--r--network/id2arch/makefile57
-rw-r--r--network/id2arch/seqsplit.asn175
-rw-r--r--network/id2arch/seqsplit.h259
-rw-r--r--network/medarch/client/medarch.c13
-rw-r--r--network/medarch/client/medutil.c105
-rw-r--r--network/nsclilib/ni_msg.c7
-rw-r--r--network/nsclilib/ni_service.c24
-rw-r--r--network/suggest/client/suggapi.c6
-rw-r--r--network/suggest/server/suggsrv.c9
-rw-r--r--network/taxon1/taxon2/tc2proc.c52
-rw-r--r--network/vibnet/trmlst.c8
-rw-r--r--network/wwwblast/.WWWBLAST_VERSION1
-rw-r--r--network/wwwblast/Src/wwwblast.c114
-rw-r--r--network/wwwblast/readme.html9
-rw-r--r--network/wwwblast/readme.txt5
25 files changed, 6224 insertions, 4870 deletions
diff --git a/network/blast3/client/.NETBLAST_VERSION b/network/blast3/client/.NETBLAST_VERSION
deleted file mode 100644
index bda8fbec..00000000
--- a/network/blast3/client/.NETBLAST_VERSION
+++ /dev/null
@@ -1 +0,0 @@
-2.2.6
diff --git a/network/id1arch/accid1.c b/network/id1arch/accid1.c
index fa8b070f..6cb3885f 100644
--- a/network/id1arch/accid1.c
+++ b/network/id1arch/accid1.c
@@ -257,6 +257,8 @@ s_ID1BioseqFetchFunc(Pointer data)
BioseqPtr bsp;
SeqIdPtr sip;
Int4 gi=0;
+ Int4 ent=0;
+ CharPtr sat=NULL;
Int2 retcode=0;
ompcp = (OMProcControlPtr)data;
@@ -287,6 +289,13 @@ s_ID1BioseqFetchFunc(Pointer data)
return OM_MSG_RET_ERROR;
if(sip->choice != SEQID_GI){
+ if(sip->choice==SEQID_GENERAL){
+ Dbtag *db = (Dbtag*)sip->data.ptrvalue;
+ sat=db->db;
+ gi=ent=db->tag->str?atoi(db->tag->str):db->tag->id;
+ sep=ID1ArchSeqEntryGet(gi,sat,ent,0,0);
+ if(sep) goto GOTIT;
+ }
gi = ID1FindSeqId(sip);
} else {
gi = sip->data.intvalue;
@@ -298,7 +307,7 @@ s_ID1BioseqFetchFunc(Pointer data)
sep = ID1SeqEntryGet(gi,0);/*** always get a whole blob in anticipation of following requests ***/
if(sep == NULL)
return OM_MSG_RET_ERROR;
-
+GOTIT:
sip = (SeqIdPtr)(ompcp->input_data);
bsp = BioseqFindInSeqEntry(sip, sep);
ompcp->output_data = (Pointer)bsp;
diff --git a/network/id1arch/idfetch.c b/network/id1arch/idfetch.c
index 9ba87b96..09660d5d 100644
--- a/network/id1arch/idfetch.c
+++ b/network/id1arch/idfetch.c
@@ -25,6 +25,9 @@
* Author Karl Sirotkin
*
$Log: idfetch.c,v $
+ Revision 1.31 2004/02/18 22:18:45 yaschenk
+ adding recognition of gnl|sat_name|ent seqids
+
Revision 1.30 2004/02/03 21:25:16 yaschenk
relaxing ranges for -g and -e
@@ -602,9 +605,15 @@ Int2 Main()
gi = ID1ArchGIGet (sip);
if(gi <= 0)
{
- SeqIdPrint(sip, tbuf, PRINTID_FASTA_SHORT);
- ErrPostEx(SEV_ERROR, 0, 0, "Couldn't find SeqId [%s]", tbuf);
- goto FATAL;
+ if(sip->choice==SEQID_GENERAL){
+ Dbtag *db = (Dbtag*)sip->data.ptrvalue;
+ gi=myargs[entarg].intvalue=db->tag->str?atoi(db->tag->str):db->tag->id;
+ myargs[dbarg].strvalue=StringSave(db->db);
+ } else {
+ SeqIdPrint(sip, tbuf, PRINTID_FASTA_SHORT);
+ ErrPostEx(SEV_ERROR, 0, 0, "Couldn't find SeqId [%s]", tbuf);
+ goto FATAL;
+ }
}
}
else if(fp_in)
@@ -744,7 +753,10 @@ static Boolean IdFetch_func1(CharPtr data, Int2 maxplex)
if(seqIdParse)
{
SeqIdPtr sip;
- Int4 gi;
+ Int4 gi,ent=0;
+ CharPtr sat=NULL;
+
+
sip = SeqIdParse(data);
if(sip == NULL)
{
@@ -754,11 +766,17 @@ static Boolean IdFetch_func1(CharPtr data, Int2 maxplex)
gi = ID1ArchGIGet(sip);
if(gi <= 0)
{
- SeqIdPrint(sip, data, PRINTID_FASTA_SHORT);
- ErrPostEx(SEV_ERROR, 0, 0, "Couldn't find SeqId [%s]", data);
- exit(1);
+ if(sip->choice==SEQID_GENERAL){
+ Dbtag *db = (Dbtag*)sip->data.ptrvalue;
+ gi=ent=db->tag->str?atoi(db->tag->str):db->tag->id;
+ sat=StringSave(db->db);
+ } else {
+ SeqIdPrint(sip, data, PRINTID_FASTA_SHORT);
+ ErrPostEx(SEV_ERROR, 0, 0, "Couldn't find SeqId [%s]", data);
+ exit(1);
+ }
}
- return IdFetch_func(gi, NULL, 0, maxplex);
+ return IdFetch_func(gi, sat, ent, maxplex);
}
else if(hasVersion || accession)
{
@@ -996,13 +1014,9 @@ static Boolean IdFetch_func(Int4 gi,CharPtr db, Int4 ent,Int2 maxplex)
}
break;
case 3:
-#if 0
- if(!SeqEntryToFlat(sep, fp, GENBANK_FMT, RELEASE_MODE)){
-#else
AssignIDsInEntity(0,OBJ_SEQENTRY,sep);
if(!SeqEntryToGnbk(sep,NULL,GENBANK_FMT,ENTREZ_MODE,0,SHOW_CONTIG_FEATURES|ONLY_NEAR_FEATURES,
LOOKUP_FAR_COMPONENTS|LOOKUP_FAR_LOCATIONS|LOOKUP_FAR_PRODUCTS|LOOKUP_FAR_HISTORY|STREAM_SEQ_PORT_FIRST,0,NULL,fp)){
-#endif
ErrPostEx(SEV_WARNING,0,0,
"GenBank Format does not exist for this sequence ");
retval=FALSE;
@@ -1010,13 +1024,9 @@ static Boolean IdFetch_func(Int4 gi,CharPtr db, Int4 ent,Int2 maxplex)
}
break;
case 4:
-#if 0
- if(!SeqEntryToFlat(sep, fp, GENPEPT_FMT, RELEASE_MODE))
-#else
AssignIDsInEntity(0,OBJ_SEQENTRY,sep);
if(!SeqEntryToGnbk(sep,NULL,GENPEPT_FMT,ENTREZ_MODE,0,SHOW_CONTIG_FEATURES|ONLY_NEAR_FEATURES,
LOOKUP_FAR_COMPONENTS|LOOKUP_FAR_LOCATIONS|LOOKUP_FAR_PRODUCTS|LOOKUP_FAR_HISTORY|STREAM_SEQ_PORT_FIRST,0,NULL,fp))
-#endif
{
ErrPostEx(SEV_WARNING,0,0,
"GenPept Format does not exist for this sequence");
@@ -1031,21 +1041,11 @@ static Boolean IdFetch_func(Int4 gi,CharPtr db, Int4 ent,Int2 maxplex)
switch(myargs[infotypearg].intvalue){
case 0:
if(bsp){
-#if 0
- SeqEntrysToFasta (sep, fp, ISA_na (bsp->mol), group_segs);
-#else
MyBioseqToFasta(bsp,(Pointer)fp);
-#endif
}
else
{
-#if 0
- SeqEntryToFasta(sep, fp, TRUE); /* nuc acids */
- SeqEntryToFasta(sep, fp, FALSE); /* proteins */
-#else
VisitBioseqsInSep(sep,(Pointer)fp, MyBioseqToFasta);
-
-#endif
}
break;
case 2:
diff --git a/network/id2arch/id2.asn b/network/id2arch/id2.asn
index f85764af..739be22f 100644
--- a/network/id2arch/id2.asn
+++ b/network/id2arch/id2.asn
@@ -1,4 +1,4 @@
---$Revision: 1.6 $
+--$Revision: 1.11 $
--********************************************************************
--
-- Network Id server network access
@@ -16,14 +16,17 @@
NCBI-ID2Access DEFINITIONS ::=
BEGIN
-IMPORTS Seq-id, Seq-loc FROM NCBI-Seqloc
- ID2S-Chunk-Id FROM NCBI-Seq-split;
+IMPORTS Seq-id, Seq-loc FROM NCBI-Seqloc
+ ID2S-Chunk-Id, ID2S-Seq-annot-Info FROM NCBI-Seq-split;
----------------------------------------------------------------------------
-- request types
----------------------------------------------------------------------------
+-- Requests are sent in packets to allow sending several requests at once
+-- to avoid network latency, without possiblity of deadlock with server.
+-- Server will not start sending replies until it will read the whole packet.
ID2-Request-Packet ::= SEQUENCE OF ID2-Request
@@ -37,16 +40,17 @@ ID2-Request ::= SEQUENCE {
request CHOICE {
init NULL,
get-packages ID2-Request-Get-Packages,
- string-to-gi ID2-Request-String-To-Gi,
- seq-id-to-gi ID2-Request-Seq-id-To-Gi,
- gi-to-tse-id ID2-Request-Gi-To-TSE-Id,
- get-tse ID2-Request-Get-TSE,
- reget-tse ID2-Request-ReGet-TSE,
+ get-seq-id ID2-Request-Get-Seq-id,
+ get-blob-id ID2-Request-Get-Blob-Id,
+ get-blob-info ID2-Request-Get-Blob-Info,
+ reget-blob ID2-Request-ReGet-Blob,
get-chunks ID2S-Request-Get-Chunks
}
}
+-- Request for set of params packages know by server.
+-- Packages can be used to abbreviate parameters of request.
ID2-Request-Get-Packages ::= SEQUENCE {
-- return known packages from this list
-- if unset - return all known packages
@@ -56,93 +60,125 @@ ID2-Request-Get-Packages ::= SEQUENCE {
no-contents NULL OPTIONAL
}
-
-ID2-Request-String-To-Gi ::= SEQUENCE {
- -- requested sequence ID, can be any string
- id VisibleString
+-- Requested sequence ID, can be any string or Seq-id.
+-- This request will be replied with one or more ID2-Reply-Get-Seq-id.
+ID2-Request-Get-Seq-id ::= SEQUENCE {
+ seq-id ID2-Seq-id,
+ seq-id-type INTEGER {
+ any (0), -- return any one Seq-id
+ gi (1), -- gi is preferred
+ text (2), -- text Seq-id (accession etc) is preferred
+ general (4), -- general Seq-id is preferred
+ all (127) -- return all Seq-ids of the sequence
+ } DEFAULT any
}
-ID2-Request-Seq-id-To-Gi ::= SEQUENCE {
- -- requested sequence ID, can be any ID
+ID2-Seq-id ::= CHOICE {
+ string VisibleString,
seq-id Seq-id
}
-ID2-Request-Gi-To-TSE-Id ::= SEQUENCE {
+-- Return blob-id with specified seq-id.
+-- This request with be replied with one or more ID2-Reply-Get-Blob-Id.
+ID2-Request-Get-Blob-Id ::= SEQUENCE {
-- id can be supplied by inner request
- gi CHOICE {
- gi INTEGER,
- string ID2-Request-String-To-Gi,
- seq-id ID2-Request-Seq-id-To-Gi
- },
-
- -- return id of tse with sequence
- sources SET OF VisibleString OPTIONAL,
+ seq-id ID2-Request-Get-Seq-id,
- -- return TSE-Ids with external references to this gi
- external NULL OPTIONAL,
+ -- return id of blob with sequence
+ sources SEQUENCE OF VisibleString OPTIONAL,
- -- return in addition list of gis also resolving to this tse
- current-gis NULL OPTIONAL
+ -- return Blob-Ids with external features on this Seq-id
+ external NULL OPTIONAL
}
-ID2-Request-Get-TSE ::= SEQUENCE {
+-- Return some information related to the blob.
+-- This request with be replied with one or more of:
+-- ID2-Reply-Get-Blob-Seq-ids - if requested by get-seq-ids field
+-- ID2-Reply-Get-Blob - if requested by get-data field
+-- ID2S-Reply-Get-Split-Info
+-- ID2S-Reply-Get-Chunk
+-- Last two can be sent in addition to ID2-Reply-Get-Blob
+-- if the blob is split on the server.
+-- The replies are made separate to allow server to create replies easier
+-- from precalculated data. Each of these replies have ID2-Reply-Data field.
+ID2-Request-Get-Blob-Info ::= SEQUENCE {
-- id can be supplied by inner request
- tse-id CHOICE {
- tse-id ID2-TSE-Id,
- gi SEQUENCE {
- request ID2-Request-Gi-To-TSE-Id,
-
- -- if this field is set, then server will not send
- -- tses listed here
- exclude-tses SET OF ID2-TSE-Id OPTIONAL
+ blob-id CHOICE {
+ -- id can be supplied by inner request
+ blob-id ID2-Blob-Id,
+
+ -- generate blob-ids from request
+ resolve SEQUENCE {
+ request ID2-Request-Get-Blob-Id,
+
+ -- server will not send blobs listed here
+ exclude-blobs SEQUENCE OF ID2-Blob-Id OPTIONAL
}
},
+ -- return in addition list of Seq-ids also resolving to this blob
+ get-seq-ids NULL OPTIONAL,
+
-- level of details requested immediately
- -- server will send relevant chunks if TSE is splitted
- details ID2-Get-TSE-Details OPTIONAL
+ -- server will send relevant chunks if blob is splitted
+ get-data ID2-Get-Blob-Details OPTIONAL
}
-ID2-Request-ReGet-TSE ::= SEQUENCE {
- tse-id ID2-TSE-Id,
+-- This is similar to FTP reget command.
+-- It may be unsupported by server.
+-- It's defined only for plain blobs (returned in ID2-Reply-Get-Blob)
+-- as all split data comes in small chunks, so reget doesn't make sense.
+ID2-Request-ReGet-Blob ::= SEQUENCE {
+ blob-id ID2-Blob-Id,
- -- level of details requested
- details ID2-Get-TSE-Details OPTIONAL,
+ -- blob split version to resend
+ split-version INTEGER,
-- start offset of data to get
offset INTEGER
}
-
+-- Request for specific chunks.
+-- Server will reply with one or more ID2S-Reply-Get-Chunk.
ID2S-Request-Get-Chunks ::= SEQUENCE {
- tse-id ID2-TSE-Id,
+ blob-id ID2-Blob-Id,
-- requests for specific chunks of splitted blob
- chunks SET OF ID2S-Chunk-Id
+ chunks SEQUENCE OF ID2S-Chunk-Id
}
-ID2-Get-TSE-Details ::= SEQUENCE {
- location Seq-loc,
+-- The following structure describes what parts of blob are required
+-- immediately after ID2-Request-Get-Blob-Info in case blob is split.
+-- Seq-entry level will have probably the same values as Entry-complexities.
+ID2-Get-Blob-Details ::= SEQUENCE {
+ -- reference location for details - can be only part of sequence
+ location Seq-loc OPTIONAL,
+ -- Seq-entry level for all data except descriptors (sequnence, annots)
seq-class-level INTEGER DEFAULT 1,
+ -- Seq-entry level for descriptors
descr-level INTEGER DEFAULT 1,
+ -- mask of descriptor types - see Seqdesc for variants' values
descr-type-mask INTEGER DEFAULT 0,
+ -- mask of annotation types - see Seq-annot.data for values
annot-type-mask INTEGER DEFAULT 0,
+ -- mask of feature types - see SeqFeatData for values
feat-type-mask INTEGER DEFAULT 0,
+ -- level of sequence data to load
sequence-level ENUMERATED {
- none (0) ,
- seq-map (1) ,
- seq-data (2)
+ none (0), -- not required
+ seq-map (1), -- at least seq-map
+ seq-data (2) -- include seq-data
} DEFAULT none
}
@@ -158,22 +194,38 @@ ID2-Reply ::= SEQUENCE {
params ID2-Params OPTIONAL,
+ error SEQUENCE OF ID2-Error OPTIONAL,
+
+ -- true if this reply is the last one for the request
+ -- false if more replies will follow
+ end-of-reply NULL OPTIONAL,
+
+ -- reply data moved at the end to make it easier to construct
+ -- the reply data manually from precalculated data
reply CHOICE {
init NULL,
+ empty NULL,
get-package ID2-Reply-Get-Package,
- -- string-to-gi ID2-Reply-String-To-Gi,
- seq-id-to-gi ID2-Reply-Seq-id-To-Gi,
- gi-to-tse-id ID2-Reply-Gi-To-TSE-Id,
- get-tse ID2-Reply-Get-TSE,
- get-tse-info ID2S-Reply-Get-TSE-Info,
+ get-seq-id ID2-Reply-Get-Seq-id,
+ get-blob-id ID2-Reply-Get-Blob-Id,
+ get-blob-seq-ids ID2-Reply-Get-Blob-Seq-ids,
+ get-blob ID2-Reply-Get-Blob,
+ reget-blob ID2-Reply-ReGet-Blob,
+ get-split-info ID2S-Reply-Get-Split-Info,
get-chunk ID2S-Reply-Get-Chunk
},
- error SEQUENCE OF ID2-Error OPTIONAL,
-
- -- true if this reply is the last one for the request
- -- false if more replies will follow
- end-of-reply BOOLEAN
+ -- additional error flag if the reply is broken in the middle
+ -- of transfer.
+ -- 'last-octet-string', and 'nothing' mean that
+ -- client may use ReGet request to get the remaining data.
+ discard ENUMERATED {
+ reply (0), -- whole reply should be discarded
+ last-octet-string (1), -- all data in embedded ID2-Reply-Data
+ -- except last OCTET STRING is correct
+ nothing (2) -- all data in embedded ID2-Reply-Data
+ -- is correct, but is incomplete
+ } OPTIONAL
}
@@ -212,6 +264,7 @@ ID2-Error ::= SEQUENCE {
}
+-- Reply to ID2-Request-Get-Packages.
ID2-Reply-Get-Package ::= SEQUENCE {
name VisibleString,
@@ -219,85 +272,146 @@ ID2-Reply-Get-Package ::= SEQUENCE {
}
-ID2-Reply-Seq-id-To-Gi ::= SEQUENCE {
- -- request sequence ID, copy from request
- seq-id Seq-id,
+-- Reply to ID2-Request-Get-Seq-id.
+ID2-Reply-Get-Seq-id ::= SEQUENCE {
+ -- copy of request
+ request ID2-Request-Get-Seq-id,
- -- gi of requested Seq-id
- -- not set if error occured
- gi INTEGER OPTIONAL
+ -- resolved Seq-id
+ -- not set if error occurred
+ seq-id SEQUENCE OF Seq-id OPTIONAL
}
-ID2-Reply-Gi-To-TSE-Id ::= SEQUENCE {
- gi INTEGER,
+-- Reply to ID2-Request-Get-Blob-Id.
+ID2-Reply-Get-Blob-Id ::= SEQUENCE {
+ -- requested Seq-id
+ seq-id Seq-id,
+
+ -- result
+ blob-id ID2-Blob-Id,
- -- source name of this tse set
- -- "" for native tse - tse with sequence
- source VisibleString DEFAULT "",
+ -- version of split data
+ -- (0 for non split)
+ split-version INTEGER DEFAULT 0,
- -- tse set with requested gi
- -- not set if error occured
- tses SET OF ID2-TSE-Id-Info OPTIONAL
+ -- annotation types in this blob
+ -- annotation are unknown if this field is omitted
+ annot-info SEQUENCE OF ID2S-Seq-annot-Info OPTIONAL
}
-ID2-TSE-Id-Info ::= SEQUENCE {
- tse-id ID2-TSE-Id,
+-- Reply to ID2-Request-Get-Blob-Info.
+ID2-Reply-Get-Blob-Seq-ids ::= SEQUENCE {
+ blob-id ID2-Blob-Id,
+
+ -- list of Seq-id resolving to this Blob-Id
+ -- in compressed format
+ ids ID2-Reply-Data OPTIONAL
+}
+
+
+-- Reply to ID2-Request-Get-Blob-Info.
+ID2-Reply-Get-Blob ::= SEQUENCE {
+ blob-id ID2-Blob-Id,
-- version of split data
-- (0 for non split)
- split-version INTEGER DEFAULT 0
+ split-version INTEGER DEFAULT 0,
+
+ -- whole blob or blob skeleton
+ -- not set if error occurred
+ data ID2-Reply-Data OPTIONAL
}
-ID2-Reply-Get-TSE ::= SEQUENCE {
- tse-id ID2-TSE-Id,
+-- Reply to ID2-Request-Get-Blob-Info.
+ID2S-Reply-Get-Split-Info ::= SEQUENCE {
+ blob-id ID2-Blob-Id,
- -- whole tse or tse skeleton
- -- not set if error occured
+ -- version of split data
+ split-version INTEGER,
+
+ -- blob split info
+ -- not set if error occurred
data ID2-Reply-Data OPTIONAL
}
-ID2S-Reply-Get-TSE-Info ::= SEQUENCE {
- tse-id ID2-TSE-Id,
+-- Reply to ID2-Request-ReGet-Blob.
+ID2-Reply-ReGet-Blob ::= SEQUENCE {
+ blob-id ID2-Blob-Id,
- -- version of split data
+ -- version of data split
split-version INTEGER,
- -- tse split info
- -- not set if error occured
- info ID2-Reply-Data OPTIONAL
+ -- offset of data
+ offset INTEGER,
+
+ -- blob split info
+ -- not set if error occurred
+ data ID2-Reply-Data OPTIONAL
}
+-- Reply to ID2S-Request-Get-Chunks.
ID2S-Reply-Get-Chunk ::= SEQUENCE {
- tse-id ID2-TSE-Id,
+ blob-id ID2-Blob-Id,
+ -- id of chunk to send
chunk-id ID2S-Chunk-Id,
-- chunk data
- -- not set if error occured
+ -- not set if error occurred
data ID2-Reply-Data OPTIONAL
}
+-- Data packing.
ID2-Reply-Data ::= SEQUENCE {
- data-type INTEGER, -- index of negotiated types
+ -- index of negotiated types
-- recommended types
-- Seq-entry,
-- ID2S-Split-Info,
-- ID2S-Chunk
+ data-type INTEGER {
+ seq-entry (0),
+ seq-annot (1),
+ id2s-split-info (2),
+ id2s-chunk (3)
+ } DEFAULT seq-entry,
-- serialization format (ASN.1 binary, ASN.1 text)
- data-format INTEGER, -- index of negotiated formats
+ -- index of negotiated formats
+ data-format INTEGER {
+ asn-binary (0),
+ asn-text (1),
+ xml (2)
+ } DEFAULT asn-binary,
-- post serialization compression (plain, gzip, etc.)
- data-compression INTEGER, -- index of negotiated formats
+ -- index of negotiated compressions
+ data-compression INTEGER {
+ none (0),
+ gzip (1),
+ nlmzip (2),
+ bzip2 (3)
+ } DEFAULT none,
-- data blob
- data SEQUENCE OF OCTET STRING
+ data SEQUENCE OF OCTET STRING
+}
+
+
+-- Data packed within ID2-Reply-Get-Blob-Seq-ids reply.
+ID2-Blob-Seq-ids ::= SEQUENCE OF ID2-Blob-Seq-id
+
+
+ID2-Blob-Seq-id ::= SEQUENCE {
+ seq-id Seq-id,
+
+ -- this Seq-id is replaced by sequence in another blob
+ replaced NULL OPTIONAL
}
@@ -306,9 +420,16 @@ ID2-Reply-Data ::= SEQUENCE {
----------------------------------------------------------------------------
-ID2-TSE-Id ::= SEQUENCE {
+ID2-Blob-Id ::= SEQUENCE {
sat INTEGER,
- sat-key INTEGER
+ sub-sat INTEGER {
+ main (0),
+ snp (1),
+ mgc (16)
+ } DEFAULT main,
+ sat-key INTEGER,
+ -- version of blob, optional in some requests
+ version INTEGER OPTIONAL
}
@@ -320,17 +441,17 @@ ID2-Param ::= SEQUENCE {
value SEQUENCE OF VisibleString OPTIONAL,
type ENUMERATED {
-- no response expected
- set-value (1) ,
+ set-value (1),
-- this option is for client only
-- server replies with its value of param if known
-- server omits this param in reply if unknown to server
- get-value (2) ,
+ get-value (2),
-- no direct response expected,
-- but if the param or its value is not supported
-- an error is reported and the request is not be completed
- force-value (3) ,
+ force-value (3),
-- use named package
-- value should be unset
diff --git a/network/id2arch/id2.c b/network/id2arch/id2.c
index 8a96fe8d..fe8c90a7 100644
--- a/network/id2arch/id2.c
+++ b/network/id2arch/id2.c
@@ -32,7 +32,7 @@ id2genAsnLoad(void)
/**************************************************
* Generated object loaders for Module NCBI-ID2Access
-* Generated using ASNCODE Revision: 6.0 at Dec 15, 2003 5:08 PM
+* Generated using ASNCODE Revision: 6.0 at May 3, 2004 6:18 PM
*
**************************************************/
@@ -209,20 +209,17 @@ Request_requestFree(ValNodePtr anp)
case Request_request_get_packages:
ID2RequestGetPackagesFree(anp -> data.ptrvalue);
break;
- case Request_request_string_to_gi:
- ID2RequestStringToGiFree(anp -> data.ptrvalue);
+ case Request_request_get_seq_id:
+ ID2RequestGetSeqIdFree(anp -> data.ptrvalue);
break;
- case Request_request_seq_id_to_gi:
- ID2RequestSeqIdToGiFree(anp -> data.ptrvalue);
+ case Request_request_get_blob_id:
+ ID2RequestGetBlobIdFree(anp -> data.ptrvalue);
break;
- case Request_request_gi_to_tse_id:
- ID2RequestGiToTSEIdFree(anp -> data.ptrvalue);
+ case Request_request_get_blob_info:
+ ID2RequestGetBlobInfoFree(anp -> data.ptrvalue);
break;
- case Request_request_get_tse:
- ID2RequestGetTSEFree(anp -> data.ptrvalue);
- break;
- case Request_request_reget_tse:
- ID2RequestReGetTSEFree(anp -> data.ptrvalue);
+ case Request_request_reget_blob:
+ ID2RequestReGetBlobFree(anp -> data.ptrvalue);
break;
case Request_request_get_chunks:
ID2SRequestGetChunksFree(anp -> data.ptrvalue);
@@ -380,25 +377,21 @@ Request_requestAsnRead(AsnIoPtr aip, AsnTypePtr orig)
choice = Request_request_get_packages;
func = (AsnReadFunc) ID2RequestGetPackagesAsnRead;
}
- else if (atp == REQUEST_request_string_to_gi) {
- choice = Request_request_string_to_gi;
- func = (AsnReadFunc) ID2RequestStringToGiAsnRead;
- }
- else if (atp == REQUEST_request_seq_id_to_gi) {
- choice = Request_request_seq_id_to_gi;
- func = (AsnReadFunc) ID2RequestSeqIdToGiAsnRead;
+ else if (atp == ID2_REQUEST_request_get_seq_id) {
+ choice = Request_request_get_seq_id;
+ func = (AsnReadFunc) ID2RequestGetSeqIdAsnRead;
}
- else if (atp == REQUEST_request_gi_to_tse_id) {
- choice = Request_request_gi_to_tse_id;
- func = (AsnReadFunc) ID2RequestGiToTSEIdAsnRead;
+ else if (atp == ID2_REQUEST_request_get_blob_id) {
+ choice = Request_request_get_blob_id;
+ func = (AsnReadFunc) ID2RequestGetBlobIdAsnRead;
}
- else if (atp == ID2_REQUEST_request_get_tse) {
- choice = Request_request_get_tse;
- func = (AsnReadFunc) ID2RequestGetTSEAsnRead;
+ else if (atp == REQUEST_request_get_blob_info) {
+ choice = Request_request_get_blob_info;
+ func = (AsnReadFunc) ID2RequestGetBlobInfoAsnRead;
}
- else if (atp == ID2_REQUEST_request_reget_tse) {
- choice = Request_request_reget_tse;
- func = (AsnReadFunc) ID2RequestReGetTSEAsnRead;
+ else if (atp == ID2_REQUEST_request_reget_blob) {
+ choice = Request_request_reget_blob;
+ func = (AsnReadFunc) ID2RequestReGetBlobAsnRead;
}
else if (atp == ID2_REQUEST_request_get_chunks) {
choice = Request_request_get_chunks;
@@ -530,25 +523,21 @@ Request_requestAsnWrite(Request_requestPtr anp, AsnIoPtr aip, AsnTypePtr orig)
writetype = REQUEST_request_get_packages;
func = (AsnWriteFunc) ID2RequestGetPackagesAsnWrite;
break;
- case Request_request_string_to_gi:
- writetype = REQUEST_request_string_to_gi;
- func = (AsnWriteFunc) ID2RequestStringToGiAsnWrite;
- break;
- case Request_request_seq_id_to_gi:
- writetype = REQUEST_request_seq_id_to_gi;
- func = (AsnWriteFunc) ID2RequestSeqIdToGiAsnWrite;
+ case Request_request_get_seq_id:
+ writetype = ID2_REQUEST_request_get_seq_id;
+ func = (AsnWriteFunc) ID2RequestGetSeqIdAsnWrite;
break;
- case Request_request_gi_to_tse_id:
- writetype = REQUEST_request_gi_to_tse_id;
- func = (AsnWriteFunc) ID2RequestGiToTSEIdAsnWrite;
+ case Request_request_get_blob_id:
+ writetype = ID2_REQUEST_request_get_blob_id;
+ func = (AsnWriteFunc) ID2RequestGetBlobIdAsnWrite;
break;
- case Request_request_get_tse:
- writetype = ID2_REQUEST_request_get_tse;
- func = (AsnWriteFunc) ID2RequestGetTSEAsnWrite;
+ case Request_request_get_blob_info:
+ writetype = REQUEST_request_get_blob_info;
+ func = (AsnWriteFunc) ID2RequestGetBlobInfoAsnWrite;
break;
- case Request_request_reget_tse:
- writetype = ID2_REQUEST_request_reget_tse;
- func = (AsnWriteFunc) ID2RequestReGetTSEAsnWrite;
+ case Request_request_reget_blob:
+ writetype = ID2_REQUEST_request_reget_blob;
+ func = (AsnWriteFunc) ID2RequestReGetBlobAsnWrite;
break;
case Request_request_get_chunks:
writetype = ID2_REQUEST_request_get_chunks;
@@ -846,15 +835,16 @@ erret:
/**************************************************
*
-* ID2RequestStringToGiNew()
+* ID2RequestGetSeqIdNew()
*
**************************************************/
NLM_EXTERN
-ID2RequestStringToGiPtr LIBCALL
-ID2RequestStringToGiNew(void)
+ID2RequestGetSeqIdPtr LIBCALL
+ID2RequestGetSeqIdNew(void)
{
- ID2RequestStringToGiPtr ptr = MemNew((size_t) sizeof(ID2RequestStringToGi));
+ ID2RequestGetSeqIdPtr ptr = MemNew((size_t) sizeof(ID2RequestGetSeqId));
+ ptr -> seq_id_type = 0;
return ptr;
}
@@ -862,36 +852,36 @@ ID2RequestStringToGiNew(void)
/**************************************************
*
-* ID2RequestStringToGiFree()
+* ID2RequestGetSeqIdFree()
*
**************************************************/
NLM_EXTERN
-ID2RequestStringToGiPtr LIBCALL
-ID2RequestStringToGiFree(ID2RequestStringToGiPtr ptr)
+ID2RequestGetSeqIdPtr LIBCALL
+ID2RequestGetSeqIdFree(ID2RequestGetSeqIdPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- MemFree(ptr -> id);
+ ID2SeqIdFree(ptr -> seq_id);
return MemFree(ptr);
}
/**************************************************
*
-* ID2RequestStringToGiAsnRead()
+* ID2RequestGetSeqIdAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2RequestStringToGiPtr LIBCALL
-ID2RequestStringToGiAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2RequestGetSeqIdPtr LIBCALL
+ID2RequestGetSeqIdAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2RequestStringToGiPtr ptr;
+ ID2RequestGetSeqIdPtr ptr;
if (! loaded)
{
@@ -904,17 +894,17 @@ ID2RequestStringToGiAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2RequestStringToGi ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_REQUEST_STRING_TO_GI);
+ if (orig == NULL) { /* ID2RequestGetSeqId ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_REQUEST_GET_SEQ_ID);
} else {
- atp = AsnLinkType(orig, ID2_REQUEST_STRING_TO_GI);
+ atp = AsnLinkType(orig, ID2_REQUEST_GET_SEQ_ID);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2RequestStringToGiNew();
+ ptr = ID2RequestGetSeqIdNew();
if (ptr == NULL) {
goto erret;
}
@@ -925,166 +915,18 @@ ID2RequestStringToGiAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2_REQUEST_STRING_TO_GI_id) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
+ if (atp == ID2_REQUEST_GET_SEQ_ID_seq_id) {
+ ptr -> seq_id = ID2SeqIdAsnRead(aip, atp);
+ if (aip -> io_failure) {
goto erret;
}
- ptr -> id = av.ptrvalue;
atp = AsnReadId(aip,amp, atp);
}
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- /* end struct */
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
-
-erret:
- aip -> io_failure = TRUE;
- ptr = ID2RequestStringToGiFree(ptr);
- goto ret;
-}
-
-
-
-/**************************************************
-*
-* ID2RequestStringToGiAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2RequestStringToGiAsnWrite(ID2RequestStringToGiPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return FALSE;
- }
- }
-
- if (aip == NULL) {
- return FALSE;
- }
-
- atp = AsnLinkType(orig, ID2_REQUEST_STRING_TO_GI); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- if (ptr -> id != NULL) {
- av.ptrvalue = ptr -> id;
- retval = AsnWrite(aip, ID2_REQUEST_STRING_TO_GI_id, &av);
- }
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-
-/**************************************************
-*
-* ID2RequestSeqIdToGiNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2RequestSeqIdToGiPtr LIBCALL
-ID2RequestSeqIdToGiNew(void)
-{
- ID2RequestSeqIdToGiPtr ptr = MemNew((size_t) sizeof(ID2RequestSeqIdToGi));
-
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2RequestSeqIdToGiFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2RequestSeqIdToGiPtr LIBCALL
-ID2RequestSeqIdToGiFree(ID2RequestSeqIdToGiPtr ptr)
-{
-
- if(ptr == NULL) {
- return NULL;
- }
- SeqIdFree(ptr -> seq_id);
- return MemFree(ptr);
-}
-
-
-/**************************************************
-*
-* ID2RequestSeqIdToGiAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2RequestSeqIdToGiPtr LIBCALL
-ID2RequestSeqIdToGiAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean isError = FALSE;
- AsnReadFunc func;
- ID2RequestSeqIdToGiPtr ptr;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2RequestSeqIdToGi ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_REQUEST_SEQ_ID_TO_GI);
- } else {
- atp = AsnLinkType(orig, ID2_REQUEST_SEQ_ID_TO_GI);
- }
- /* link in local tree */
- if (atp == NULL) {
- return NULL;
- }
-
- ptr = ID2RequestSeqIdToGiNew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
- func = NULL;
-
- if (atp == ID2_REQUEST_SEQ_ID_TO_GI_seq_id) {
- ptr -> seq_id = SeqIdAsnRead(aip, atp);
- if (aip -> io_failure) {
+ if (atp == REQUEST_GET_SEQ_ID_seq_id_type) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
+ ptr -> seq_id_type = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
@@ -1099,7 +941,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2RequestSeqIdToGiFree(ptr);
+ ptr = ID2RequestGetSeqIdFree(ptr);
goto ret;
}
@@ -1107,11 +949,11 @@ erret:
/**************************************************
*
-* ID2RequestSeqIdToGiAsnWrite()
+* ID2RequestGetSeqIdAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2RequestSeqIdToGiAsnWrite(ID2RequestSeqIdToGiPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2RequestGetSeqIdAsnWrite(ID2RequestGetSeqIdPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -1128,7 +970,7 @@ ID2RequestSeqIdToGiAsnWrite(ID2RequestSeqIdToGiPtr ptr, AsnIoPtr aip, AsnTypePtr
return FALSE;
}
- atp = AsnLinkType(orig, ID2_REQUEST_SEQ_ID_TO_GI); /* link local tree */
+ atp = AsnLinkType(orig, ID2_REQUEST_GET_SEQ_ID); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -1139,10 +981,12 @@ ID2RequestSeqIdToGiAsnWrite(ID2RequestSeqIdToGiPtr ptr, AsnIoPtr aip, AsnTypePtr
}
if (ptr -> seq_id != NULL) {
- if ( ! SeqIdAsnWrite(ptr -> seq_id, aip, ID2_REQUEST_SEQ_ID_TO_GI_seq_id)) {
+ if ( ! ID2SeqIdAsnWrite(ptr -> seq_id, aip, ID2_REQUEST_GET_SEQ_ID_seq_id)) {
goto erret;
}
}
+ av.intvalue = ptr -> seq_id_type;
+ retval = AsnWrite(aip, REQUEST_GET_SEQ_ID_seq_id_type, &av);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -1157,14 +1001,14 @@ erret:
/**************************************************
*
-* ID2RequestGiToTSEIdNew()
+* ID2RequestGetBlobIdNew()
*
**************************************************/
NLM_EXTERN
-ID2RequestGiToTSEIdPtr LIBCALL
-ID2RequestGiToTSEIdNew(void)
+ID2RequestGetBlobIdPtr LIBCALL
+ID2RequestGetBlobIdNew(void)
{
- ID2RequestGiToTSEIdPtr ptr = MemNew((size_t) sizeof(ID2RequestGiToTSEId));
+ ID2RequestGetBlobIdPtr ptr = MemNew((size_t) sizeof(ID2RequestGetBlobId));
return ptr;
@@ -1173,18 +1017,18 @@ ID2RequestGiToTSEIdNew(void)
/**************************************************
*
-* ID2RequestGiToTSEIdFree()
+* ID2RequestGetBlobIdFree()
*
**************************************************/
NLM_EXTERN
-ID2RequestGiToTSEIdPtr LIBCALL
-ID2RequestGiToTSEIdFree(ID2RequestGiToTSEIdPtr ptr)
+ID2RequestGetBlobIdPtr LIBCALL
+ID2RequestGetBlobIdFree(ID2RequestGetBlobIdPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- Gi_giFree(ptr -> Gi_gi);
+ ID2RequestGetSeqIdFree(ptr -> seq_id);
AsnGenericBaseSeqOfFree(ptr -> sources ,ASNCODE_PTRVAL_SLOT);
return MemFree(ptr);
}
@@ -1192,49 +1036,18 @@ ID2RequestGiToTSEIdFree(ID2RequestGiToTSEIdPtr ptr)
/**************************************************
*
-* Gi_giFree()
-*
-**************************************************/
-static
-Gi_giPtr LIBCALL
-Gi_giFree(ValNodePtr anp)
-{
- Pointer pnt;
-
- if (anp == NULL) {
- return NULL;
- }
-
- pnt = anp->data.ptrvalue;
- switch (anp->choice)
- {
- default:
- break;
- case Gi_gi_string:
- ID2RequestStringToGiFree(anp -> data.ptrvalue);
- break;
- case Gi_gi_seq_id:
- ID2RequestSeqIdToGiFree(anp -> data.ptrvalue);
- break;
- }
- return MemFree(anp);
-}
-
-
-/**************************************************
-*
-* ID2RequestGiToTSEIdAsnRead()
+* ID2RequestGetBlobIdAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2RequestGiToTSEIdPtr LIBCALL
-ID2RequestGiToTSEIdAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2RequestGetBlobIdPtr LIBCALL
+ID2RequestGetBlobIdAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2RequestGiToTSEIdPtr ptr;
+ ID2RequestGetBlobIdPtr ptr;
if (! loaded)
{
@@ -1247,17 +1060,17 @@ ID2RequestGiToTSEIdAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2RequestGiToTSEId ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_REQUEST_GI_TO_TSE_ID);
+ if (orig == NULL) { /* ID2RequestGetBlobId ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_REQUEST_GET_BLOB_ID);
} else {
- atp = AsnLinkType(orig, ID2_REQUEST_GI_TO_TSE_ID);
+ atp = AsnLinkType(orig, ID2_REQUEST_GET_BLOB_ID);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2RequestGiToTSEIdNew();
+ ptr = ID2RequestGetBlobIdNew();
if (ptr == NULL) {
goto erret;
}
@@ -1268,34 +1081,27 @@ ID2RequestGiToTSEIdAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2_REQUEST_GI_TO_TSE_ID_gi) {
- ptr -> Gi_gi = Gi_giAsnRead(aip, atp);
+ if (atp == ID2_REQUEST_GET_BLOB_ID_seq_id) {
+ ptr -> seq_id = ID2RequestGetSeqIdAsnRead(aip, atp);
if (aip -> io_failure) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
}
- if (atp == REQUEST_GI_TO_TSE_ID_sources) {
+ if (atp == ID2_REQUEST_GET_BLOB_ID_sources) {
ptr -> sources = AsnGenericBaseSeqOfAsnRead(aip, amp, atp, ASNCODE_PTRVAL_SLOT, &isError);
if (isError && ptr -> sources == NULL) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
}
- if (atp == REQUEST_GI_TO_TSE_ID_external) {
+ if (atp == REQUEST_GET_BLOB_ID_external) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
ptr -> external = av.boolvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == GI_TO_TSE_ID_current_gis) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> current_gis = av.boolvalue;
- atp = AsnReadId(aip,amp, atp);
- }
if (AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
@@ -1308,7 +1114,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2RequestGiToTSEIdFree(ptr);
+ ptr = ID2RequestGetBlobIdFree(ptr);
goto ret;
}
@@ -1316,99 +1122,11 @@ erret:
/**************************************************
*
-* Gi_giAsnRead()
-*
-**************************************************/
-static
-Gi_giPtr LIBCALL
-Gi_giAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- ValNodePtr anp;
- Uint1 choice;
- Boolean isError = FALSE;
- Boolean nullIsError = FALSE;
- AsnReadFunc func;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* Gi_gi ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_REQUEST_GI_TO_TSE_ID_gi);
- } else {
- atp = AsnLinkType(orig, ID2_REQUEST_GI_TO_TSE_ID_gi); /* link in local tree */
- }
- if (atp == NULL) {
- return NULL;
- }
-
- anp = ValNodeNew(NULL);
- if (anp == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the CHOICE or OpenStruct value (nothing) */
- goto erret;
- }
-
- func = NULL;
-
- atp = AsnReadId(aip, amp, atp); /* find the choice */
- if (atp == NULL) {
- goto erret;
- }
- if (atp == ID2_REQUEST_GI_TO_TSE_ID_gi_gi) {
- choice = Gi_gi_gi;
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- anp->data.intvalue = av.intvalue;
- }
- else if (atp == REQUEST_GI_TO_TSE_ID_gi_string) {
- choice = Gi_gi_string;
- func = (AsnReadFunc) ID2RequestStringToGiAsnRead;
- }
- else if (atp == REQUEST_GI_TO_TSE_ID_gi_seq_id) {
- choice = Gi_gi_seq_id;
- func = (AsnReadFunc) ID2RequestSeqIdToGiAsnRead;
- }
- anp->choice = choice;
- if (func != NULL)
- {
- anp->data.ptrvalue = (* func)(aip, atp);
- if (aip -> io_failure) goto erret;
-
- if (nullIsError && anp->data.ptrvalue == NULL) {
- goto erret;
- }
- }
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return anp;
-
-erret:
- anp = MemFree(anp);
- aip -> io_failure = TRUE;
- goto ret;
-}
-
-
-/**************************************************
-*
-* ID2RequestGiToTSEIdAsnWrite()
+* ID2RequestGetBlobIdAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2RequestGiToTSEIdAsnWrite(ID2RequestGiToTSEIdPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2RequestGetBlobIdAsnWrite(ID2RequestGetBlobIdPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -1425,7 +1143,7 @@ ID2RequestGiToTSEIdAsnWrite(ID2RequestGiToTSEIdPtr ptr, AsnIoPtr aip, AsnTypePtr
return FALSE;
}
- atp = AsnLinkType(orig, ID2_REQUEST_GI_TO_TSE_ID); /* link local tree */
+ atp = AsnLinkType(orig, ID2_REQUEST_GET_BLOB_ID); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -1435,16 +1153,14 @@ ID2RequestGiToTSEIdAsnWrite(ID2RequestGiToTSEIdPtr ptr, AsnIoPtr aip, AsnTypePtr
goto erret;
}
- if (ptr -> Gi_gi != NULL) {
- if ( ! Gi_giAsnWrite(ptr -> Gi_gi, aip, ID2_REQUEST_GI_TO_TSE_ID_gi)) {
+ if (ptr -> seq_id != NULL) {
+ if ( ! ID2RequestGetSeqIdAsnWrite(ptr -> seq_id, aip, ID2_REQUEST_GET_BLOB_ID_seq_id)) {
goto erret;
}
}
- retval = AsnGenericBaseSeqOfAsnWrite(ptr -> sources ,ASNCODE_PTRVAL_SLOT, aip, REQUEST_GI_TO_TSE_ID_sources, REQUEST_GI_TO_TSE_ID_sources_E);
+ retval = AsnGenericBaseSeqOfAsnWrite(ptr -> sources ,ASNCODE_PTRVAL_SLOT, aip, ID2_REQUEST_GET_BLOB_ID_sources, REQUEST_GET_BLOB_ID_sources_E);
av.boolvalue = ptr -> external;
- retval = AsnWrite(aip, REQUEST_GI_TO_TSE_ID_external, &av);
- av.boolvalue = ptr -> current_gis;
- retval = AsnWrite(aip, GI_TO_TSE_ID_current_gis, &av);
+ retval = AsnWrite(aip, REQUEST_GET_BLOB_ID_external, &av);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -1459,80 +1175,14 @@ erret:
/**************************************************
*
-* Gi_giAsnWrite()
-*
-**************************************************/
-static Boolean LIBCALL
-Gi_giAsnWrite(Gi_giPtr anp, AsnIoPtr aip, AsnTypePtr orig)
-
-{
- DataVal av;
- AsnTypePtr atp, writetype = NULL;
- Pointer pnt;
- AsnWriteFunc func = NULL;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad())
- return FALSE;
- }
-
- if (aip == NULL)
- return FALSE;
-
- atp = AsnLinkType(orig, ID2_REQUEST_GI_TO_TSE_ID_gi); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
-
- av.ptrvalue = (Pointer)anp;
- if (! AsnWriteChoice(aip, atp, (Int2)anp->choice, &av)) {
- goto erret;
- }
-
- pnt = anp->data.ptrvalue;
- switch (anp->choice)
- {
- case Gi_gi_gi:
- av.intvalue = anp->data.intvalue;
- retval = AsnWrite(aip, ID2_REQUEST_GI_TO_TSE_ID_gi_gi, &av);
- break;
- case Gi_gi_string:
- writetype = REQUEST_GI_TO_TSE_ID_gi_string;
- func = (AsnWriteFunc) ID2RequestStringToGiAsnWrite;
- break;
- case Gi_gi_seq_id:
- writetype = REQUEST_GI_TO_TSE_ID_gi_seq_id;
- func = (AsnWriteFunc) ID2RequestSeqIdToGiAsnWrite;
- break;
- }
- if (writetype != NULL) {
- retval = (* func)(pnt, aip, writetype); /* write it out */
- }
- if (!retval) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-/**************************************************
-*
-* ID2RequestGetTSENew()
+* ID2RequestGetBlobInfoNew()
*
**************************************************/
NLM_EXTERN
-ID2RequestGetTSEPtr LIBCALL
-ID2RequestGetTSENew(void)
+ID2RequestGetBlobInfoPtr LIBCALL
+ID2RequestGetBlobInfoNew(void)
{
- ID2RequestGetTSEPtr ptr = MemNew((size_t) sizeof(ID2RequestGetTSE));
+ ID2RequestGetBlobInfoPtr ptr = MemNew((size_t) sizeof(ID2RequestGetBlobInfo));
return ptr;
@@ -1541,14 +1191,14 @@ ID2RequestGetTSENew(void)
/**************************************************
*
-* TseId_giNew()
+* BlobId_resolveNew()
*
**************************************************/
static
-TseId_giPtr LIBCALL
-TseId_giNew(void)
+BlobId_resolvePtr LIBCALL
+BlobId_resolveNew(void)
{
- TseId_giPtr ptr = MemNew((size_t) sizeof(TseId_gi));
+ BlobId_resolvePtr ptr = MemNew((size_t) sizeof(BlobId_resolve));
return ptr;
@@ -1557,31 +1207,31 @@ TseId_giNew(void)
/**************************************************
*
-* ID2RequestGetTSEFree()
+* ID2RequestGetBlobInfoFree()
*
**************************************************/
NLM_EXTERN
-ID2RequestGetTSEPtr LIBCALL
-ID2RequestGetTSEFree(ID2RequestGetTSEPtr ptr)
+ID2RequestGetBlobInfoPtr LIBCALL
+ID2RequestGetBlobInfoFree(ID2RequestGetBlobInfoPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- TseId_tse_idFree(ptr -> TseId_tse_id);
- ID2GetTSEDetailsFree(ptr -> details);
+ BlobId_blob_idFree(ptr -> BlobId_blob_id);
+ ID2GetBlobDetailsFree(ptr -> get_data);
return MemFree(ptr);
}
/**************************************************
*
-* TseId_tse_idFree()
+* BlobId_blob_idFree()
*
**************************************************/
static
-TseId_tse_idPtr LIBCALL
-TseId_tse_idFree(ValNodePtr anp)
+BlobId_blob_idPtr LIBCALL
+BlobId_blob_idFree(ValNodePtr anp)
{
Pointer pnt;
@@ -1594,11 +1244,11 @@ TseId_tse_idFree(ValNodePtr anp)
{
default:
break;
- case TseId_tse_id_tse_id:
- ID2TSEIdFree(anp -> data.ptrvalue);
+ case BlobId_blob_id_blob_id:
+ ID2BlobIdFree(anp -> data.ptrvalue);
break;
- case TseId_tse_id_TseId_Gi:
- TseId_giFree(anp -> data.ptrvalue);
+ case BlobId_blob_id_BlobId_Resolve:
+ BlobId_resolveFree(anp -> data.ptrvalue);
break;
}
return MemFree(anp);
@@ -1607,37 +1257,37 @@ TseId_tse_idFree(ValNodePtr anp)
/**************************************************
*
-* TseId_giFree()
+* BlobId_resolveFree()
*
**************************************************/
static
-TseId_giPtr LIBCALL
-TseId_giFree(TseId_giPtr ptr)
+BlobId_resolvePtr LIBCALL
+BlobId_resolveFree(BlobId_resolvePtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- ID2RequestGiToTSEIdFree(ptr -> request);
- AsnGenericUserSeqOfFree(ptr -> exclude_tses, (AsnOptFreeFunc) ID2TSEIdFree);
+ ID2RequestGetBlobIdFree(ptr -> request);
+ AsnGenericUserSeqOfFree(ptr -> exclude_blobs, (AsnOptFreeFunc) ID2BlobIdFree);
return MemFree(ptr);
}
/**************************************************
*
-* ID2RequestGetTSEAsnRead()
+* ID2RequestGetBlobInfoAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2RequestGetTSEPtr LIBCALL
-ID2RequestGetTSEAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2RequestGetBlobInfoPtr LIBCALL
+ID2RequestGetBlobInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2RequestGetTSEPtr ptr;
+ ID2RequestGetBlobInfoPtr ptr;
if (! loaded)
{
@@ -1650,17 +1300,17 @@ ID2RequestGetTSEAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2RequestGetTSE ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_REQUEST_GET_TSE);
+ if (orig == NULL) { /* ID2RequestGetBlobInfo ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_REQUEST_GET_BLOB_INFO);
} else {
- atp = AsnLinkType(orig, ID2_REQUEST_GET_TSE);
+ atp = AsnLinkType(orig, ID2_REQUEST_GET_BLOB_INFO);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2RequestGetTSENew();
+ ptr = ID2RequestGetBlobInfoNew();
if (ptr == NULL) {
goto erret;
}
@@ -1671,15 +1321,22 @@ ID2RequestGetTSEAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2_REQUEST_GET_TSE_tse_id) {
- ptr -> TseId_tse_id = TseId_tse_idAsnRead(aip, atp);
+ if (atp == REQUEST_GET_BLOB_INFO_blob_id) {
+ ptr -> BlobId_blob_id = BlobId_blob_idAsnRead(aip, atp);
if (aip -> io_failure) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2_REQUEST_GET_TSE_details) {
- ptr -> details = ID2GetTSEDetailsAsnRead(aip, atp);
+ if (atp == GET_BLOB_INFO_get_seq_ids) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> get_seq_ids = av.boolvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == REQUEST_GET_BLOB_INFO_get_data) {
+ ptr -> get_data = ID2GetBlobDetailsAsnRead(aip, atp);
if (aip -> io_failure) {
goto erret;
}
@@ -1697,7 +1354,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2RequestGetTSEFree(ptr);
+ ptr = ID2RequestGetBlobInfoFree(ptr);
goto ret;
}
@@ -1705,12 +1362,12 @@ erret:
/**************************************************
*
-* TseId_tse_idAsnRead()
+* BlobId_blob_idAsnRead()
*
**************************************************/
static
-TseId_tse_idPtr LIBCALL
-TseId_tse_idAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+BlobId_blob_idPtr LIBCALL
+BlobId_blob_idAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -1731,10 +1388,10 @@ TseId_tse_idAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* TseId_tse_id ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_REQUEST_GET_TSE_tse_id);
+ if (orig == NULL) { /* BlobId_blob_id ::= (self contained) */
+ atp = AsnReadId(aip, amp, REQUEST_GET_BLOB_INFO_blob_id);
} else {
- atp = AsnLinkType(orig, ID2_REQUEST_GET_TSE_tse_id); /* link in local tree */
+ atp = AsnLinkType(orig, REQUEST_GET_BLOB_INFO_blob_id); /* link in local tree */
}
if (atp == NULL) {
return NULL;
@@ -1754,13 +1411,13 @@ TseId_tse_idAsnRead(AsnIoPtr aip, AsnTypePtr orig)
if (atp == NULL) {
goto erret;
}
- if (atp == REQUEST_GET_TSE_tse_id_tse_id) {
- choice = TseId_tse_id_tse_id;
- func = (AsnReadFunc) ID2TSEIdAsnRead;
+ if (atp == GET_BLOB_INFO_blob_id_blob_id) {
+ choice = BlobId_blob_id_blob_id;
+ func = (AsnReadFunc) ID2BlobIdAsnRead;
}
- else if (atp == ID2_REQUEST_GET_TSE_tse_id_gi) {
- choice = TseId_tse_id_TseId_Gi;
- func = (AsnReadFunc) TseId_giAsnRead;
+ else if (atp == GET_BLOB_INFO_blob_id_resolve) {
+ choice = BlobId_blob_id_BlobId_Resolve;
+ func = (AsnReadFunc) BlobId_resolveAsnRead;
}
anp->choice = choice;
if (func != NULL)
@@ -1786,18 +1443,18 @@ erret:
/**************************************************
*
-* TseId_giAsnRead()
+* BlobId_resolveAsnRead()
*
**************************************************/
static
-TseId_giPtr LIBCALL
-TseId_giAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+BlobId_resolvePtr LIBCALL
+BlobId_resolveAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- TseId_giPtr ptr;
+ BlobId_resolvePtr ptr;
if (! loaded)
{
@@ -1810,17 +1467,17 @@ TseId_giAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* TseId_gi ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_REQUEST_GET_TSE_tse_id_gi);
+ if (orig == NULL) { /* BlobId_resolve ::= (self contained) */
+ atp = AsnReadId(aip, amp, GET_BLOB_INFO_blob_id_resolve);
} else {
- atp = AsnLinkType(orig, ID2_REQUEST_GET_TSE_tse_id_gi);
+ atp = AsnLinkType(orig, GET_BLOB_INFO_blob_id_resolve);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = TseId_giNew();
+ ptr = BlobId_resolveNew();
if (ptr == NULL) {
goto erret;
}
@@ -1831,16 +1488,16 @@ TseId_giAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == GET_TSE_tse_id_gi_request) {
- ptr -> request = ID2RequestGiToTSEIdAsnRead(aip, atp);
+ if (atp == INFO_blob_id_resolve_request) {
+ ptr -> request = ID2RequestGetBlobIdAsnRead(aip, atp);
if (aip -> io_failure) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
}
- if (atp == GET_TSE_tse_id_gi_exclude_tses) {
- ptr -> exclude_tses = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2TSEIdAsnRead, (AsnOptFreeFunc) ID2TSEIdFree);
- if (isError && ptr -> exclude_tses == NULL) {
+ if (atp == blob_id_resolve_exclude_blobs) {
+ ptr -> exclude_blobs = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2BlobIdAsnRead, (AsnOptFreeFunc) ID2BlobIdFree);
+ if (isError && ptr -> exclude_blobs == NULL) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
@@ -1857,7 +1514,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = TseId_giFree(ptr);
+ ptr = BlobId_resolveFree(ptr);
goto ret;
}
@@ -1865,11 +1522,11 @@ erret:
/**************************************************
*
-* ID2RequestGetTSEAsnWrite()
+* ID2RequestGetBlobInfoAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2RequestGetTSEAsnWrite(ID2RequestGetTSEPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2RequestGetBlobInfoAsnWrite(ID2RequestGetBlobInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -1886,7 +1543,7 @@ ID2RequestGetTSEAsnWrite(ID2RequestGetTSEPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
return FALSE;
}
- atp = AsnLinkType(orig, ID2_REQUEST_GET_TSE); /* link local tree */
+ atp = AsnLinkType(orig, ID2_REQUEST_GET_BLOB_INFO); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -1896,13 +1553,15 @@ ID2RequestGetTSEAsnWrite(ID2RequestGetTSEPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
goto erret;
}
- if (ptr -> TseId_tse_id != NULL) {
- if ( ! TseId_tse_idAsnWrite(ptr -> TseId_tse_id, aip, ID2_REQUEST_GET_TSE_tse_id)) {
+ if (ptr -> BlobId_blob_id != NULL) {
+ if ( ! BlobId_blob_idAsnWrite(ptr -> BlobId_blob_id, aip, REQUEST_GET_BLOB_INFO_blob_id)) {
goto erret;
}
}
- if (ptr -> details != NULL) {
- if ( ! ID2GetTSEDetailsAsnWrite(ptr -> details, aip, ID2_REQUEST_GET_TSE_details)) {
+ av.boolvalue = ptr -> get_seq_ids;
+ retval = AsnWrite(aip, GET_BLOB_INFO_get_seq_ids, &av);
+ if (ptr -> get_data != NULL) {
+ if ( ! ID2GetBlobDetailsAsnWrite(ptr -> get_data, aip, REQUEST_GET_BLOB_INFO_get_data)) {
goto erret;
}
}
@@ -1920,11 +1579,11 @@ erret:
/**************************************************
*
-* TseId_tse_idAsnWrite()
+* BlobId_blob_idAsnWrite()
*
**************************************************/
static Boolean LIBCALL
-TseId_tse_idAsnWrite(TseId_tse_idPtr anp, AsnIoPtr aip, AsnTypePtr orig)
+BlobId_blob_idAsnWrite(BlobId_blob_idPtr anp, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
@@ -1942,7 +1601,7 @@ TseId_tse_idAsnWrite(TseId_tse_idPtr anp, AsnIoPtr aip, AsnTypePtr orig)
if (aip == NULL)
return FALSE;
- atp = AsnLinkType(orig, ID2_REQUEST_GET_TSE_tse_id); /* link local tree */
+ atp = AsnLinkType(orig, REQUEST_GET_BLOB_INFO_blob_id); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -1957,13 +1616,13 @@ TseId_tse_idAsnWrite(TseId_tse_idPtr anp, AsnIoPtr aip, AsnTypePtr orig)
pnt = anp->data.ptrvalue;
switch (anp->choice)
{
- case TseId_tse_id_tse_id:
- writetype = REQUEST_GET_TSE_tse_id_tse_id;
- func = (AsnWriteFunc) ID2TSEIdAsnWrite;
+ case BlobId_blob_id_blob_id:
+ writetype = GET_BLOB_INFO_blob_id_blob_id;
+ func = (AsnWriteFunc) ID2BlobIdAsnWrite;
break;
- case TseId_tse_id_TseId_Gi:
- writetype = ID2_REQUEST_GET_TSE_tse_id_gi;
- func = (AsnWriteFunc) TseId_giAsnWrite;
+ case BlobId_blob_id_BlobId_Resolve:
+ writetype = GET_BLOB_INFO_blob_id_resolve;
+ func = (AsnWriteFunc) BlobId_resolveAsnWrite;
break;
}
if (writetype != NULL) {
@@ -1982,11 +1641,11 @@ erret:
/**************************************************
*
-* TseId_giAsnWrite()
+* BlobId_resolveAsnWrite()
*
**************************************************/
static Boolean LIBCALL
-TseId_giAsnWrite(TseId_giPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+BlobId_resolveAsnWrite(BlobId_resolvePtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -2003,7 +1662,7 @@ TseId_giAsnWrite(TseId_giPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
return FALSE;
}
- atp = AsnLinkType(orig, ID2_REQUEST_GET_TSE_tse_id_gi); /* link local tree */
+ atp = AsnLinkType(orig, GET_BLOB_INFO_blob_id_resolve); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -2014,11 +1673,11 @@ TseId_giAsnWrite(TseId_giPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
}
if (ptr -> request != NULL) {
- if ( ! ID2RequestGiToTSEIdAsnWrite(ptr -> request, aip, GET_TSE_tse_id_gi_request)) {
+ if ( ! ID2RequestGetBlobIdAsnWrite(ptr -> request, aip, INFO_blob_id_resolve_request)) {
goto erret;
}
}
- AsnGenericUserSeqOfAsnWrite(ptr -> exclude_tses, (AsnWriteFunc) ID2TSEIdAsnWrite, aip, GET_TSE_tse_id_gi_exclude_tses, TSE_tse_id_gi_exclude_tses_E);
+ AsnGenericUserSeqOfAsnWrite(ptr -> exclude_blobs, (AsnWriteFunc) ID2BlobIdAsnWrite, aip, blob_id_resolve_exclude_blobs, blob_id_resolve_exclude_blobs_E);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -2033,14 +1692,14 @@ erret:
/**************************************************
*
-* ID2RequestReGetTSENew()
+* ID2RequestReGetBlobNew()
*
**************************************************/
NLM_EXTERN
-ID2RequestReGetTSEPtr LIBCALL
-ID2RequestReGetTSENew(void)
+ID2RequestReGetBlobPtr LIBCALL
+ID2RequestReGetBlobNew(void)
{
- ID2RequestReGetTSEPtr ptr = MemNew((size_t) sizeof(ID2RequestReGetTSE));
+ ID2RequestReGetBlobPtr ptr = MemNew((size_t) sizeof(ID2RequestReGetBlob));
return ptr;
@@ -2049,37 +1708,36 @@ ID2RequestReGetTSENew(void)
/**************************************************
*
-* ID2RequestReGetTSEFree()
+* ID2RequestReGetBlobFree()
*
**************************************************/
NLM_EXTERN
-ID2RequestReGetTSEPtr LIBCALL
-ID2RequestReGetTSEFree(ID2RequestReGetTSEPtr ptr)
+ID2RequestReGetBlobPtr LIBCALL
+ID2RequestReGetBlobFree(ID2RequestReGetBlobPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- ID2TSEIdFree(ptr -> tse_id);
- ID2GetTSEDetailsFree(ptr -> details);
+ ID2BlobIdFree(ptr -> blob_id);
return MemFree(ptr);
}
/**************************************************
*
-* ID2RequestReGetTSEAsnRead()
+* ID2RequestReGetBlobAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2RequestReGetTSEPtr LIBCALL
-ID2RequestReGetTSEAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2RequestReGetBlobPtr LIBCALL
+ID2RequestReGetBlobAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2RequestReGetTSEPtr ptr;
+ ID2RequestReGetBlobPtr ptr;
if (! loaded)
{
@@ -2092,17 +1750,17 @@ ID2RequestReGetTSEAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2RequestReGetTSE ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_REQUEST_REGET_TSE);
+ if (orig == NULL) { /* ID2RequestReGetBlob ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_REQUEST_REGET_BLOB);
} else {
- atp = AsnLinkType(orig, ID2_REQUEST_REGET_TSE);
+ atp = AsnLinkType(orig, ID2_REQUEST_REGET_BLOB);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2RequestReGetTSENew();
+ ptr = ID2RequestReGetBlobNew();
if (ptr == NULL) {
goto erret;
}
@@ -2113,21 +1771,21 @@ ID2RequestReGetTSEAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2_REQUEST_REGET_TSE_tse_id) {
- ptr -> tse_id = ID2TSEIdAsnRead(aip, atp);
+ if (atp == ID2_REQUEST_REGET_BLOB_blob_id) {
+ ptr -> blob_id = ID2BlobIdAsnRead(aip, atp);
if (aip -> io_failure) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2_REQUEST_REGET_TSE_details) {
- ptr -> details = ID2GetTSEDetailsAsnRead(aip, atp);
- if (aip -> io_failure) {
+ if (atp == REGET_BLOB_split_version) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
+ ptr -> split_version = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2_REQUEST_REGET_TSE_offset) {
+ if (atp == ID2_REQUEST_REGET_BLOB_offset) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
@@ -2146,7 +1804,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2RequestReGetTSEFree(ptr);
+ ptr = ID2RequestReGetBlobFree(ptr);
goto ret;
}
@@ -2154,11 +1812,11 @@ erret:
/**************************************************
*
-* ID2RequestReGetTSEAsnWrite()
+* ID2RequestReGetBlobAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2RequestReGetTSEAsnWrite(ID2RequestReGetTSEPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2RequestReGetBlobAsnWrite(ID2RequestReGetBlobPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -2175,7 +1833,7 @@ ID2RequestReGetTSEAsnWrite(ID2RequestReGetTSEPtr ptr, AsnIoPtr aip, AsnTypePtr o
return FALSE;
}
- atp = AsnLinkType(orig, ID2_REQUEST_REGET_TSE); /* link local tree */
+ atp = AsnLinkType(orig, ID2_REQUEST_REGET_BLOB); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -2185,18 +1843,15 @@ ID2RequestReGetTSEAsnWrite(ID2RequestReGetTSEPtr ptr, AsnIoPtr aip, AsnTypePtr o
goto erret;
}
- if (ptr -> tse_id != NULL) {
- if ( ! ID2TSEIdAsnWrite(ptr -> tse_id, aip, ID2_REQUEST_REGET_TSE_tse_id)) {
- goto erret;
- }
- }
- if (ptr -> details != NULL) {
- if ( ! ID2GetTSEDetailsAsnWrite(ptr -> details, aip, ID2_REQUEST_REGET_TSE_details)) {
+ if (ptr -> blob_id != NULL) {
+ if ( ! ID2BlobIdAsnWrite(ptr -> blob_id, aip, ID2_REQUEST_REGET_BLOB_blob_id)) {
goto erret;
}
}
+ av.intvalue = ptr -> split_version;
+ retval = AsnWrite(aip, REGET_BLOB_split_version, &av);
av.intvalue = ptr -> offset;
- retval = AsnWrite(aip, ID2_REQUEST_REGET_TSE_offset, &av);
+ retval = AsnWrite(aip, ID2_REQUEST_REGET_BLOB_offset, &av);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -2238,7 +1893,7 @@ ID2SRequestGetChunksFree(ID2SRequestGetChunksPtr ptr)
if(ptr == NULL) {
return NULL;
}
- ID2TSEIdFree(ptr -> tse_id);
+ ID2BlobIdFree(ptr -> blob_id);
AsnGenericBaseSeqOfFree(ptr -> chunks ,ASNCODE_INTVAL_SLOT);
return MemFree(ptr);
}
@@ -2291,8 +1946,8 @@ ID2SRequestGetChunksAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2S_REQUEST_GET_CHUNKS_tse_id) {
- ptr -> tse_id = ID2TSEIdAsnRead(aip, atp);
+ if (atp == ID2S_REQUEST_GET_CHUNKS_blob_id) {
+ ptr -> blob_id = ID2BlobIdAsnRead(aip, atp);
if (aip -> io_failure) {
goto erret;
}
@@ -2356,8 +2011,8 @@ ID2SRequestGetChunksAsnWrite(ID2SRequestGetChunksPtr ptr, AsnIoPtr aip, AsnTypeP
goto erret;
}
- if (ptr -> tse_id != NULL) {
- if ( ! ID2TSEIdAsnWrite(ptr -> tse_id, aip, ID2S_REQUEST_GET_CHUNKS_tse_id)) {
+ if (ptr -> blob_id != NULL) {
+ if ( ! ID2BlobIdAsnWrite(ptr -> blob_id, aip, ID2S_REQUEST_GET_CHUNKS_blob_id)) {
goto erret;
}
}
@@ -2376,51 +2031,51 @@ erret:
/**************************************************
*
-* ID2TSEIdNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2TSEIdPtr LIBCALL
-ID2TSEIdNew(void)
-{
- ID2TSEIdPtr ptr = MemNew((size_t) sizeof(ID2TSEId));
-
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2TSEIdFree()
+* ID2SeqIdFree()
*
**************************************************/
NLM_EXTERN
-ID2TSEIdPtr LIBCALL
-ID2TSEIdFree(ID2TSEIdPtr ptr)
+ID2SeqIdPtr LIBCALL
+ID2SeqIdFree(ValNodePtr anp)
{
+ Pointer pnt;
- if(ptr == NULL) {
+ if (anp == NULL) {
return NULL;
}
- return MemFree(ptr);
+
+ pnt = anp->data.ptrvalue;
+ switch (anp->choice)
+ {
+ default:
+ break;
+ case ID2SeqId_string:
+ MemFree(anp -> data.ptrvalue);
+ break;
+ case ID2SeqId_seq_id:
+ SeqIdFree(anp -> data.ptrvalue);
+ break;
+ }
+ return MemFree(anp);
}
/**************************************************
*
-* ID2TSEIdAsnRead()
+* ID2SeqIdAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2TSEIdPtr LIBCALL
-ID2TSEIdAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2SeqIdPtr LIBCALL
+ID2SeqIdAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
+ ValNodePtr anp;
+ Uint1 choice;
Boolean isError = FALSE;
+ Boolean nullIsError = FALSE;
AsnReadFunc func;
- ID2TSEIdPtr ptr;
if (! loaded)
{
@@ -2433,97 +2088,114 @@ ID2TSEIdAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2TSEId ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_TSE_ID);
+ if (orig == NULL) { /* ID2SeqId ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_SEQ_ID);
} else {
- atp = AsnLinkType(orig, ID2_TSE_ID);
+ atp = AsnLinkType(orig, ID2_SEQ_ID); /* link in local tree */
}
- /* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2TSEIdNew();
- if (ptr == NULL) {
+ anp = ValNodeNew(NULL);
+ if (anp == NULL) {
goto erret;
}
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the CHOICE or OpenStruct value (nothing) */
goto erret;
}
- atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2_TSE_ID_sat) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> sat = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
+ atp = AsnReadId(aip, amp, atp); /* find the choice */
+ if (atp == NULL) {
+ goto erret;
}
- if (atp == ID2_TSE_ID_sat_key) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
+ if (atp == ID2_SEQ_ID_string) {
+ choice = ID2SeqId_string;
+ if (AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> sat_key = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
+ anp->data.ptrvalue = av.ptrvalue;
+ }
+ else if (atp == ID2_SEQ_ID_seq_id) {
+ choice = ID2SeqId_seq_id;
+ func = (AsnReadFunc) SeqIdAsnRead;
}
+ anp->choice = choice;
+ if (func != NULL)
+ {
+ anp->data.ptrvalue = (* func)(aip, atp);
+ if (aip -> io_failure) goto erret;
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
+ if (nullIsError && anp->data.ptrvalue == NULL) {
+ goto erret;
+ }
}
- /* end struct */
ret:
AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
+ return anp;
erret:
+ anp = MemFree(anp);
aip -> io_failure = TRUE;
- ptr = ID2TSEIdFree(ptr);
goto ret;
}
-
/**************************************************
*
-* ID2TSEIdAsnWrite()
+* ID2SeqIdAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2TSEIdAsnWrite(ID2TSEIdPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2SeqIdAsnWrite(ID2SeqIdPtr anp, AsnIoPtr aip, AsnTypePtr orig)
+
{
DataVal av;
- AsnTypePtr atp;
+ AsnTypePtr atp, writetype = NULL;
+ Pointer pnt;
+ AsnWriteFunc func = NULL;
Boolean retval = FALSE;
if (! loaded)
{
- if (! id2genAsnLoad()) {
- return FALSE;
- }
- }
-
- if (aip == NULL) {
+ if (! id2genAsnLoad())
return FALSE;
}
- atp = AsnLinkType(orig, ID2_TSE_ID); /* link local tree */
+ if (aip == NULL)
+ return FALSE;
+
+ atp = AsnLinkType(orig, ID2_SEQ_ID); /* link local tree */
if (atp == NULL) {
return FALSE;
}
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+
+ av.ptrvalue = (Pointer)anp;
+ if (! AsnWriteChoice(aip, atp, (Int2)anp->choice, &av)) {
goto erret;
}
- av.intvalue = ptr -> sat;
- retval = AsnWrite(aip, ID2_TSE_ID_sat, &av);
- av.intvalue = ptr -> sat_key;
- retval = AsnWrite(aip, ID2_TSE_ID_sat_key, &av);
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ pnt = anp->data.ptrvalue;
+ switch (anp->choice)
+ {
+ case ID2SeqId_string:
+ av.ptrvalue = anp->data.ptrvalue;
+ retval = AsnWrite(aip, ID2_SEQ_ID_string, &av);
+ break;
+ case ID2SeqId_seq_id:
+ writetype = ID2_SEQ_ID_seq_id;
+ func = (AsnWriteFunc) SeqIdAsnWrite;
+ break;
+ }
+ if (writetype != NULL) {
+ retval = (* func)(pnt, aip, writetype); /* write it out */
+ }
+ if (!retval) {
goto erret;
}
retval = TRUE;
@@ -2534,24 +2206,18 @@ erret:
}
-
/**************************************************
*
-* ID2GetTSEDetailsNew()
+* ID2BlobIdNew()
*
**************************************************/
NLM_EXTERN
-ID2GetTSEDetailsPtr LIBCALL
-ID2GetTSEDetailsNew(void)
+ID2BlobIdPtr LIBCALL
+ID2BlobIdNew(void)
{
- ID2GetTSEDetailsPtr ptr = MemNew((size_t) sizeof(ID2GetTSEDetails));
+ ID2BlobIdPtr ptr = MemNew((size_t) sizeof(ID2BlobId));
- ptr -> seq_class_level = 1;
- ptr -> descr_level = 1;
- ptr -> descr_type_mask = 0;
- ptr -> annot_type_mask = 0;
- ptr -> feat_type_mask = 0;
- ptr -> sequence_level = 0;
+ ptr -> sub_sat = 0;
return ptr;
}
@@ -2559,36 +2225,35 @@ ID2GetTSEDetailsNew(void)
/**************************************************
*
-* ID2GetTSEDetailsFree()
+* ID2BlobIdFree()
*
**************************************************/
NLM_EXTERN
-ID2GetTSEDetailsPtr LIBCALL
-ID2GetTSEDetailsFree(ID2GetTSEDetailsPtr ptr)
+ID2BlobIdPtr LIBCALL
+ID2BlobIdFree(ID2BlobIdPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- ID2SeqLocFree(ptr -> location);
return MemFree(ptr);
}
/**************************************************
*
-* ID2GetTSEDetailsAsnRead()
+* ID2BlobIdAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2GetTSEDetailsPtr LIBCALL
-ID2GetTSEDetailsAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2BlobIdPtr LIBCALL
+ID2BlobIdAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2GetTSEDetailsPtr ptr;
+ ID2BlobIdPtr ptr;
if (! loaded)
{
@@ -2601,17 +2266,17 @@ ID2GetTSEDetailsAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2GetTSEDetails ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_GET_TSE_DETAILS);
+ if (orig == NULL) { /* ID2BlobId ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_BLOB_ID);
} else {
- atp = AsnLinkType(orig, ID2_GET_TSE_DETAILS);
+ atp = AsnLinkType(orig, ID2_BLOB_ID);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2GetTSEDetailsNew();
+ ptr = ID2BlobIdNew();
if (ptr == NULL) {
goto erret;
}
@@ -2622,53 +2287,32 @@ ID2GetTSEDetailsAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2_GET_TSE_DETAILS_location) {
- ptr -> location = ID2SeqLocAsnRead(aip, atp);
- if (aip -> io_failure) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == TSE_DETAILS_seq_class_level) {
+ if (atp == ID2_BLOB_ID_sat) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> seq_class_level = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2_GET_TSE_DETAILS_descr_level) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> descr_level = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == TSE_DETAILS_descr_type_mask) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> descr_type_mask = av.intvalue;
+ ptr -> sat = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == TSE_DETAILS_annot_type_mask) {
+ if (atp == ID2_BLOB_ID_sub_sat) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> annot_type_mask = av.intvalue;
+ ptr -> sub_sat = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == GET_TSE_DETAILS_feat_type_mask) {
+ if (atp == ID2_BLOB_ID_sat_key) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> feat_type_mask = av.intvalue;
+ ptr -> sat_key = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == GET_TSE_DETAILS_sequence_level) {
+ if (atp == ID2_BLOB_ID_version) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> sequence_level = av.intvalue;
+ ptr -> version = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
@@ -2683,7 +2327,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2GetTSEDetailsFree(ptr);
+ ptr = ID2BlobIdFree(ptr);
goto ret;
}
@@ -2691,11 +2335,11 @@ erret:
/**************************************************
*
-* ID2GetTSEDetailsAsnWrite()
+* ID2BlobIdAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2GetTSEDetailsAsnWrite(ID2GetTSEDetailsPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2BlobIdAsnWrite(ID2BlobIdPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -2712,7 +2356,7 @@ ID2GetTSEDetailsAsnWrite(ID2GetTSEDetailsPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
return FALSE;
}
- atp = AsnLinkType(orig, ID2_GET_TSE_DETAILS); /* link local tree */
+ atp = AsnLinkType(orig, ID2_BLOB_ID); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -2722,23 +2366,14 @@ ID2GetTSEDetailsAsnWrite(ID2GetTSEDetailsPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
goto erret;
}
- if (ptr -> location != NULL) {
- if ( ! ID2SeqLocAsnWrite(ptr -> location, aip, ID2_GET_TSE_DETAILS_location)) {
- goto erret;
- }
- }
- av.intvalue = ptr -> seq_class_level;
- retval = AsnWrite(aip, TSE_DETAILS_seq_class_level, &av);
- av.intvalue = ptr -> descr_level;
- retval = AsnWrite(aip, ID2_GET_TSE_DETAILS_descr_level, &av);
- av.intvalue = ptr -> descr_type_mask;
- retval = AsnWrite(aip, TSE_DETAILS_descr_type_mask, &av);
- av.intvalue = ptr -> annot_type_mask;
- retval = AsnWrite(aip, TSE_DETAILS_annot_type_mask, &av);
- av.intvalue = ptr -> feat_type_mask;
- retval = AsnWrite(aip, GET_TSE_DETAILS_feat_type_mask, &av);
- av.intvalue = ptr -> sequence_level;
- retval = AsnWrite(aip, GET_TSE_DETAILS_sequence_level, &av);
+ av.intvalue = ptr -> sat;
+ retval = AsnWrite(aip, ID2_BLOB_ID_sat, &av);
+ av.intvalue = ptr -> sub_sat;
+ retval = AsnWrite(aip, ID2_BLOB_ID_sub_sat, &av);
+ av.intvalue = ptr -> sat_key;
+ retval = AsnWrite(aip, ID2_BLOB_ID_sat_key, &av);
+ av.intvalue = ptr -> version;
+ retval = AsnWrite(aip, ID2_BLOB_ID_version, &av);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -2753,57 +2388,58 @@ erret:
/**************************************************
*
-* ID2SeqLocFree()
+* ID2GetBlobDetailsNew()
*
**************************************************/
NLM_EXTERN
-ID2SeqLocPtr LIBCALL
-ID2SeqLocFree(ValNodePtr anp)
+ID2GetBlobDetailsPtr LIBCALL
+ID2GetBlobDetailsNew(void)
{
- Pointer pnt;
+ ID2GetBlobDetailsPtr ptr = MemNew((size_t) sizeof(ID2GetBlobDetails));
- if (anp == NULL) {
- return NULL;
- }
+ ptr -> seq_class_level = 1;
+ ptr -> descr_level = 1;
+ ptr -> descr_type_mask = 0;
+ ptr -> annot_type_mask = 0;
+ ptr -> feat_type_mask = 0;
+ ptr -> sequence_level = 0;
+ return ptr;
- pnt = anp->data.ptrvalue;
- switch (anp->choice)
- {
- default:
- break;
- case ID2SeqLoc_int__:
- ID2IntervalFree(anp -> data.ptrvalue);
- break;
- case ID2SeqLoc_int_set:
- ID2PackedSeqIntsFree(anp -> data.ptrvalue);
- break;
- case ID2SeqLoc_whole_range:
- ID2IdRangeFree(anp -> data.ptrvalue);
- break;
- case ID2SeqLoc_loc_set:
- AsnGenericChoiceSeqOfFree((Pointer) pnt, (AsnOptFreeFunc) ID2SeqLocFree);
- break;
+}
+
+
+/**************************************************
+*
+* ID2GetBlobDetailsFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2GetBlobDetailsPtr LIBCALL
+ID2GetBlobDetailsFree(ID2GetBlobDetailsPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
}
- return MemFree(anp);
+ SeqLocFree(ptr -> location);
+ return MemFree(ptr);
}
/**************************************************
*
-* ID2SeqLocAsnRead()
+* ID2GetBlobDetailsAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2SeqLocPtr LIBCALL
-ID2SeqLocAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2GetBlobDetailsPtr LIBCALL
+ID2GetBlobDetailsAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
- ValNodePtr anp;
- Uint1 choice;
Boolean isError = FALSE;
- Boolean nullIsError = FALSE;
AsnReadFunc func;
+ ID2GetBlobDetailsPtr ptr;
if (! loaded)
{
@@ -2816,141 +2452,145 @@ ID2SeqLocAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2SeqLoc ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_SEQ_LOC);
+ if (orig == NULL) { /* ID2GetBlobDetails ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_GET_BLOB_DETAILS);
} else {
- atp = AsnLinkType(orig, ID2_SEQ_LOC); /* link in local tree */
+ atp = AsnLinkType(orig, ID2_GET_BLOB_DETAILS);
}
+ /* link in local tree */
if (atp == NULL) {
return NULL;
}
- anp = ValNodeNew(NULL);
- if (anp == NULL) {
+ ptr = ID2GetBlobDetailsNew();
+ if (ptr == NULL) {
goto erret;
}
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the CHOICE or OpenStruct value (nothing) */
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
goto erret;
}
+ atp = AsnReadId(aip,amp, atp);
func = NULL;
- atp = AsnReadId(aip, amp, atp); /* find the choice */
- if (atp == NULL) {
- goto erret;
+ if (atp == ID2_GET_BLOB_DETAILS_location) {
+ ptr -> location = SeqLocAsnRead(aip, atp);
+ if (aip -> io_failure) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2_SEQ_LOC_whole) {
- choice = ID2SeqLoc_whole;
- if (AsnReadVal(aip, atp, &av) <= 0) {
+ if (atp == BLOB_DETAILS_seq_class_level) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- anp->data.intvalue = av.intvalue;
+ ptr -> seq_class_level = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
}
- else if (atp == ID2_SEQ_LOC_int__) {
- choice = ID2SeqLoc_int__;
- func = (AsnReadFunc) ID2IntervalAsnRead;
+ if (atp == GET_BLOB_DETAILS_descr_level) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> descr_level = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
}
- else if (atp == ID2_SEQ_LOC_int_set) {
- choice = ID2SeqLoc_int_set;
- func = (AsnReadFunc) ID2PackedSeqIntsAsnRead;
+ if (atp == BLOB_DETAILS_descr_type_mask) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> descr_type_mask = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
}
- else if (atp == ID2_SEQ_LOC_whole_range) {
- choice = ID2SeqLoc_whole_range;
- func = (AsnReadFunc) ID2IdRangeAsnRead;
+ if (atp == BLOB_DETAILS_annot_type_mask) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> annot_type_mask = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
}
- else if (atp == ID2_SEQ_LOC_loc_set) {
- choice = ID2SeqLoc_loc_set;
- anp -> data.ptrvalue =
- AsnGenericChoiceSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SeqLocAsnRead, (AsnOptFreeFunc) ID2SeqLocFree);
- if (isError && anp -> data.ptrvalue == NULL) {
+ if (atp == BLOB_DETAILS_feat_type_mask) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
+ ptr -> feat_type_mask = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
}
- anp->choice = choice;
- if (func != NULL)
- {
- anp->data.ptrvalue = (* func)(aip, atp);
- if (aip -> io_failure) goto erret;
-
- if (nullIsError && anp->data.ptrvalue == NULL) {
+ if (atp == BLOB_DETAILS_sequence_level) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
+ ptr -> sequence_level = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
}
+ /* end struct */
ret:
AsnUnlinkType(orig); /* unlink local tree */
- return anp;
+ return ptr;
erret:
- anp = MemFree(anp);
aip -> io_failure = TRUE;
+ ptr = ID2GetBlobDetailsFree(ptr);
goto ret;
}
+
/**************************************************
*
-* ID2SeqLocAsnWrite()
+* ID2GetBlobDetailsAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2SeqLocAsnWrite(ID2SeqLocPtr anp, AsnIoPtr aip, AsnTypePtr orig)
-
+ID2GetBlobDetailsAsnWrite(ID2GetBlobDetailsPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
- AsnTypePtr atp, writetype = NULL;
- Pointer pnt;
- AsnWriteFunc func = NULL;
+ AsnTypePtr atp;
Boolean retval = FALSE;
if (! loaded)
{
- if (! id2genAsnLoad())
- return FALSE;
+ if (! id2genAsnLoad()) {
+ return FALSE;
+ }
}
- if (aip == NULL)
- return FALSE;
+ if (aip == NULL) {
+ return FALSE;
+ }
- atp = AsnLinkType(orig, ID2_SEQ_LOC); /* link local tree */
+ atp = AsnLinkType(orig, ID2_GET_BLOB_DETAILS); /* link local tree */
if (atp == NULL) {
return FALSE;
}
- if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
-
- av.ptrvalue = (Pointer)anp;
- if (! AsnWriteChoice(aip, atp, (Int2)anp->choice, &av)) {
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
goto erret;
}
- pnt = anp->data.ptrvalue;
- switch (anp->choice)
- {
- case ID2SeqLoc_whole:
- av.intvalue = anp->data.intvalue;
- retval = AsnWrite(aip, ID2_SEQ_LOC_whole, &av);
- break;
- case ID2SeqLoc_int__:
- writetype = ID2_SEQ_LOC_int__;
- func = (AsnWriteFunc) ID2IntervalAsnWrite;
- break;
- case ID2SeqLoc_int_set:
- writetype = ID2_SEQ_LOC_int_set;
- func = (AsnWriteFunc) ID2PackedSeqIntsAsnWrite;
- break;
- case ID2SeqLoc_whole_range:
- writetype = ID2_SEQ_LOC_whole_range;
- func = (AsnWriteFunc) ID2IdRangeAsnWrite;
- break;
- case ID2SeqLoc_loc_set:
- retval = AsnGenericChoiceSeqOfAsnWrite((Pointer) pnt, (AsnWriteFunc) ID2SeqLocAsnWrite, aip, ID2_SEQ_LOC_loc_set, ID2_SEQ_LOC_loc_set_E);
- break;
- }
- if (writetype != NULL) {
- retval = (* func)(pnt, aip, writetype); /* write it out */
+ if (ptr -> location != NULL) {
+ if ( ! SeqLocAsnWrite(ptr -> location, aip, ID2_GET_BLOB_DETAILS_location)) {
+ goto erret;
+ }
}
- if (!retval) {
+ av.intvalue = ptr -> seq_class_level;
+ retval = AsnWrite(aip, BLOB_DETAILS_seq_class_level, &av);
+ av.intvalue = ptr -> descr_level;
+ retval = AsnWrite(aip, GET_BLOB_DETAILS_descr_level, &av);
+ av.intvalue = ptr -> descr_type_mask;
+ retval = AsnWrite(aip, BLOB_DETAILS_descr_type_mask, &av);
+ av.intvalue = ptr -> annot_type_mask;
+ retval = AsnWrite(aip, BLOB_DETAILS_annot_type_mask, &av);
+ av.intvalue = ptr -> feat_type_mask;
+ retval = AsnWrite(aip, BLOB_DETAILS_feat_type_mask, &av);
+ av.intvalue = ptr -> sequence_level;
+ retval = AsnWrite(aip, BLOB_DETAILS_sequence_level, &av);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
retval = TRUE;
@@ -2961,6 +2601,7 @@ erret:
}
+
/**************************************************
*
* ID2ReplyNew()
@@ -2991,8 +2632,8 @@ ID2ReplyFree(ID2ReplyPtr ptr)
return NULL;
}
ID2ParamsFree(ptr -> params);
- Reply_replyFree(ptr -> Reply_reply);
AsnGenericUserSeqOfFree(ptr -> error, (AsnOptFreeFunc) ID2ErrorFree);
+ Reply_replyFree(ptr -> Reply_reply);
return MemFree(ptr);
}
@@ -3020,17 +2661,23 @@ Reply_replyFree(ValNodePtr anp)
case Reply_reply_get_package:
ID2ReplyGetPackageFree(anp -> data.ptrvalue);
break;
- case Reply_reply_seq_id_to_gi:
- ID2ReplySeqIdToGiFree(anp -> data.ptrvalue);
+ case Reply_reply_get_seq_id:
+ ID2ReplyGetSeqIdFree(anp -> data.ptrvalue);
break;
- case Reply_reply_gi_to_tse_id:
- ID2ReplyGiToTSEIdFree(anp -> data.ptrvalue);
+ case Reply_reply_get_blob_id:
+ ID2ReplyGetBlobIdFree(anp -> data.ptrvalue);
break;
- case Reply_reply_get_tse:
- ID2ReplyGetTSEFree(anp -> data.ptrvalue);
+ case Reply_reply_get_blob_seq_ids:
+ ID2ReplyGetBlobSeqIdsFree(anp -> data.ptrvalue);
break;
- case Reply_reply_get_tse_info:
- ID2SReplyGetTSEInfoFree(anp -> data.ptrvalue);
+ case Reply_reply_get_blob:
+ ID2ReplyGetBlobFree(anp -> data.ptrvalue);
+ break;
+ case Reply_reply_reget_blob:
+ ID2ReplyReGetBlobFree(anp -> data.ptrvalue);
+ break;
+ case Reply_reply_get_split_info:
+ ID2SReplyGetSplitInfoFree(anp -> data.ptrvalue);
break;
case Reply_reply_get_chunk:
ID2SReplyGetChunkFree(anp -> data.ptrvalue);
@@ -3101,13 +2748,6 @@ ID2ReplyAsnRead(AsnIoPtr aip, AsnTypePtr orig)
}
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2_REPLY_reply) {
- ptr -> Reply_reply = Reply_replyAsnRead(aip, atp);
- if (aip -> io_failure) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
if (atp == ID2_REPLY_error) {
ptr -> error = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2ErrorAsnRead, (AsnOptFreeFunc) ID2ErrorFree);
if (isError && ptr -> error == NULL) {
@@ -3122,6 +2762,13 @@ ID2ReplyAsnRead(AsnIoPtr aip, AsnTypePtr orig)
ptr -> end_of_reply = av.boolvalue;
atp = AsnReadId(aip,amp, atp);
}
+ if (atp == ID2_REPLY_reply) {
+ ptr -> Reply_reply = Reply_replyAsnRead(aip, atp);
+ if (aip -> io_failure) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
if (AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
@@ -3198,25 +2845,40 @@ Reply_replyAsnRead(AsnIoPtr aip, AsnTypePtr orig)
}
anp->data.boolvalue = av.boolvalue;
}
+ else if (atp == ID2_REPLY_reply_empty) {
+ choice = Reply_reply_empty;
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ anp->data.boolvalue = av.boolvalue;
+ }
else if (atp == ID2_REPLY_reply_get_package) {
choice = Reply_reply_get_package;
func = (AsnReadFunc) ID2ReplyGetPackageAsnRead;
}
- else if (atp == ID2_REPLY_reply_seq_id_to_gi) {
- choice = Reply_reply_seq_id_to_gi;
- func = (AsnReadFunc) ID2ReplySeqIdToGiAsnRead;
+ else if (atp == ID2_REPLY_reply_get_seq_id) {
+ choice = Reply_reply_get_seq_id;
+ func = (AsnReadFunc) ID2ReplyGetSeqIdAsnRead;
+ }
+ else if (atp == ID2_REPLY_reply_get_blob_id) {
+ choice = Reply_reply_get_blob_id;
+ func = (AsnReadFunc) ID2ReplyGetBlobIdAsnRead;
+ }
+ else if (atp == REPLY_reply_get_blob_seq_ids) {
+ choice = Reply_reply_get_blob_seq_ids;
+ func = (AsnReadFunc) ID2ReplyGetBlobSeqIdsAsnRead;
}
- else if (atp == ID2_REPLY_reply_gi_to_tse_id) {
- choice = Reply_reply_gi_to_tse_id;
- func = (AsnReadFunc) ID2ReplyGiToTSEIdAsnRead;
+ else if (atp == ID2_REPLY_reply_get_blob) {
+ choice = Reply_reply_get_blob;
+ func = (AsnReadFunc) ID2ReplyGetBlobAsnRead;
}
- else if (atp == ID2_REPLY_reply_get_tse) {
- choice = Reply_reply_get_tse;
- func = (AsnReadFunc) ID2ReplyGetTSEAsnRead;
+ else if (atp == ID2_REPLY_reply_reget_blob) {
+ choice = Reply_reply_reget_blob;
+ func = (AsnReadFunc) ID2ReplyReGetBlobAsnRead;
}
- else if (atp == ID2_REPLY_reply_get_tse_info) {
- choice = Reply_reply_get_tse_info;
- func = (AsnReadFunc) ID2SReplyGetTSEInfoAsnRead;
+ else if (atp == ID2_REPLY_reply_get_split_info) {
+ choice = Reply_reply_get_split_info;
+ func = (AsnReadFunc) ID2SReplyGetSplitInfoAsnRead;
}
else if (atp == ID2_REPLY_reply_get_chunk) {
choice = Reply_reply_get_chunk;
@@ -3284,14 +2946,14 @@ ID2ReplyAsnWrite(ID2ReplyPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
goto erret;
}
}
+ AsnGenericUserSeqOfAsnWrite(ptr -> error, (AsnWriteFunc) ID2ErrorAsnWrite, aip, ID2_REPLY_error, ID2_REPLY_error_E);
+ av.boolvalue = ptr -> end_of_reply;
+ retval = AsnWrite(aip, ID2_REPLY_end_of_reply, &av);
if (ptr -> Reply_reply != NULL) {
if ( ! Reply_replyAsnWrite(ptr -> Reply_reply, aip, ID2_REPLY_reply)) {
goto erret;
}
}
- AsnGenericUserSeqOfAsnWrite(ptr -> error, (AsnWriteFunc) ID2ErrorAsnWrite, aip, ID2_REPLY_error, ID2_REPLY_error_E);
- av.boolvalue = ptr -> end_of_reply;
- retval = AsnWrite(aip, ID2_REPLY_end_of_reply, &av);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -3347,25 +3009,37 @@ Reply_replyAsnWrite(Reply_replyPtr anp, AsnIoPtr aip, AsnTypePtr orig)
av.boolvalue = anp->data.boolvalue;
retval = AsnWrite(aip, ID2_REPLY_reply_init, &av);
break;
+ case Reply_reply_empty:
+ av.boolvalue = anp->data.boolvalue;
+ retval = AsnWrite(aip, ID2_REPLY_reply_empty, &av);
+ break;
case Reply_reply_get_package:
writetype = ID2_REPLY_reply_get_package;
func = (AsnWriteFunc) ID2ReplyGetPackageAsnWrite;
break;
- case Reply_reply_seq_id_to_gi:
- writetype = ID2_REPLY_reply_seq_id_to_gi;
- func = (AsnWriteFunc) ID2ReplySeqIdToGiAsnWrite;
+ case Reply_reply_get_seq_id:
+ writetype = ID2_REPLY_reply_get_seq_id;
+ func = (AsnWriteFunc) ID2ReplyGetSeqIdAsnWrite;
break;
- case Reply_reply_gi_to_tse_id:
- writetype = ID2_REPLY_reply_gi_to_tse_id;
- func = (AsnWriteFunc) ID2ReplyGiToTSEIdAsnWrite;
+ case Reply_reply_get_blob_id:
+ writetype = ID2_REPLY_reply_get_blob_id;
+ func = (AsnWriteFunc) ID2ReplyGetBlobIdAsnWrite;
break;
- case Reply_reply_get_tse:
- writetype = ID2_REPLY_reply_get_tse;
- func = (AsnWriteFunc) ID2ReplyGetTSEAsnWrite;
+ case Reply_reply_get_blob_seq_ids:
+ writetype = REPLY_reply_get_blob_seq_ids;
+ func = (AsnWriteFunc) ID2ReplyGetBlobSeqIdsAsnWrite;
break;
- case Reply_reply_get_tse_info:
- writetype = ID2_REPLY_reply_get_tse_info;
- func = (AsnWriteFunc) ID2SReplyGetTSEInfoAsnWrite;
+ case Reply_reply_get_blob:
+ writetype = ID2_REPLY_reply_get_blob;
+ func = (AsnWriteFunc) ID2ReplyGetBlobAsnWrite;
+ break;
+ case Reply_reply_reget_blob:
+ writetype = ID2_REPLY_reply_reget_blob;
+ func = (AsnWriteFunc) ID2ReplyReGetBlobAsnWrite;
+ break;
+ case Reply_reply_get_split_info:
+ writetype = ID2_REPLY_reply_get_split_info;
+ func = (AsnWriteFunc) ID2SReplyGetSplitInfoAsnWrite;
break;
case Reply_reply_get_chunk:
writetype = ID2_REPLY_reply_get_chunk;
@@ -3388,1038 +3062,6 @@ erret:
/**************************************************
*
-* ID2ReplyGetPackageNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2ReplyGetPackagePtr LIBCALL
-ID2ReplyGetPackageNew(void)
-{
- ID2ReplyGetPackagePtr ptr = MemNew((size_t) sizeof(ID2ReplyGetPackage));
-
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2ReplyGetPackageFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2ReplyGetPackagePtr LIBCALL
-ID2ReplyGetPackageFree(ID2ReplyGetPackagePtr ptr)
-{
-
- if(ptr == NULL) {
- return NULL;
- }
- MemFree(ptr -> name);
- ID2ParamsFree(ptr -> params);
- return MemFree(ptr);
-}
-
-
-/**************************************************
-*
-* ID2ReplyGetPackageAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2ReplyGetPackagePtr LIBCALL
-ID2ReplyGetPackageAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean isError = FALSE;
- AsnReadFunc func;
- ID2ReplyGetPackagePtr ptr;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2ReplyGetPackage ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_REPLY_GET_PACKAGE);
- } else {
- atp = AsnLinkType(orig, ID2_REPLY_GET_PACKAGE);
- }
- /* link in local tree */
- if (atp == NULL) {
- return NULL;
- }
-
- ptr = ID2ReplyGetPackageNew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
- func = NULL;
-
- if (atp == ID2_REPLY_GET_PACKAGE_name) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> name = av.ptrvalue;
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2_REPLY_GET_PACKAGE_params) {
- ptr -> params = ID2ParamsAsnRead(aip, atp);
- if (aip -> io_failure) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- /* end struct */
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
-
-erret:
- aip -> io_failure = TRUE;
- ptr = ID2ReplyGetPackageFree(ptr);
- goto ret;
-}
-
-
-
-/**************************************************
-*
-* ID2ReplyGetPackageAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2ReplyGetPackageAsnWrite(ID2ReplyGetPackagePtr ptr, AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return FALSE;
- }
- }
-
- if (aip == NULL) {
- return FALSE;
- }
-
- atp = AsnLinkType(orig, ID2_REPLY_GET_PACKAGE); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- if (ptr -> name != NULL) {
- av.ptrvalue = ptr -> name;
- retval = AsnWrite(aip, ID2_REPLY_GET_PACKAGE_name, &av);
- }
- if (ptr -> params != NULL) {
- if ( ! ID2ParamsAsnWrite(ptr -> params, aip, ID2_REPLY_GET_PACKAGE_params)) {
- goto erret;
- }
- }
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-
-/**************************************************
-*
-* ID2ReplySeqIdToGiNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2ReplySeqIdToGiPtr LIBCALL
-ID2ReplySeqIdToGiNew(void)
-{
- ID2ReplySeqIdToGiPtr ptr = MemNew((size_t) sizeof(ID2ReplySeqIdToGi));
-
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2ReplySeqIdToGiFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2ReplySeqIdToGiPtr LIBCALL
-ID2ReplySeqIdToGiFree(ID2ReplySeqIdToGiPtr ptr)
-{
-
- if(ptr == NULL) {
- return NULL;
- }
- SeqIdFree(ptr -> seq_id);
- return MemFree(ptr);
-}
-
-
-/**************************************************
-*
-* ID2ReplySeqIdToGiAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2ReplySeqIdToGiPtr LIBCALL
-ID2ReplySeqIdToGiAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean isError = FALSE;
- AsnReadFunc func;
- ID2ReplySeqIdToGiPtr ptr;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2ReplySeqIdToGi ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_REPLY_SEQ_ID_TO_GI);
- } else {
- atp = AsnLinkType(orig, ID2_REPLY_SEQ_ID_TO_GI);
- }
- /* link in local tree */
- if (atp == NULL) {
- return NULL;
- }
-
- ptr = ID2ReplySeqIdToGiNew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
- func = NULL;
-
- if (atp == ID2_REPLY_SEQ_ID_TO_GI_seq_id) {
- ptr -> seq_id = SeqIdAsnRead(aip, atp);
- if (aip -> io_failure) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2_REPLY_SEQ_ID_TO_GI_gi) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> gi = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
- }
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- /* end struct */
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
-
-erret:
- aip -> io_failure = TRUE;
- ptr = ID2ReplySeqIdToGiFree(ptr);
- goto ret;
-}
-
-
-
-/**************************************************
-*
-* ID2ReplySeqIdToGiAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2ReplySeqIdToGiAsnWrite(ID2ReplySeqIdToGiPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return FALSE;
- }
- }
-
- if (aip == NULL) {
- return FALSE;
- }
-
- atp = AsnLinkType(orig, ID2_REPLY_SEQ_ID_TO_GI); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- if (ptr -> seq_id != NULL) {
- if ( ! SeqIdAsnWrite(ptr -> seq_id, aip, ID2_REPLY_SEQ_ID_TO_GI_seq_id)) {
- goto erret;
- }
- }
- av.intvalue = ptr -> gi;
- retval = AsnWrite(aip, ID2_REPLY_SEQ_ID_TO_GI_gi, &av);
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-
-/**************************************************
-*
-* ID2ReplyGiToTSEIdNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2ReplyGiToTSEIdPtr LIBCALL
-ID2ReplyGiToTSEIdNew(void)
-{
- ID2ReplyGiToTSEIdPtr ptr = MemNew((size_t) sizeof(ID2ReplyGiToTSEId));
-
- ptr -> source = "0";
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2ReplyGiToTSEIdFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2ReplyGiToTSEIdPtr LIBCALL
-ID2ReplyGiToTSEIdFree(ID2ReplyGiToTSEIdPtr ptr)
-{
-
- if(ptr == NULL) {
- return NULL;
- }
- MemFree(ptr -> source);
- AsnGenericUserSeqOfFree(ptr -> tses, (AsnOptFreeFunc) ID2TSEIdInfoFree);
- return MemFree(ptr);
-}
-
-
-/**************************************************
-*
-* ID2ReplyGiToTSEIdAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2ReplyGiToTSEIdPtr LIBCALL
-ID2ReplyGiToTSEIdAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean isError = FALSE;
- AsnReadFunc func;
- ID2ReplyGiToTSEIdPtr ptr;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2ReplyGiToTSEId ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_REPLY_GI_TO_TSE_ID);
- } else {
- atp = AsnLinkType(orig, ID2_REPLY_GI_TO_TSE_ID);
- }
- /* link in local tree */
- if (atp == NULL) {
- return NULL;
- }
-
- ptr = ID2ReplyGiToTSEIdNew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
- func = NULL;
-
- if (atp == ID2_REPLY_GI_TO_TSE_ID_gi) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> gi = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2_REPLY_GI_TO_TSE_ID_source) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> source = av.ptrvalue;
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2_REPLY_GI_TO_TSE_ID_tses) {
- ptr -> tses = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2TSEIdInfoAsnRead, (AsnOptFreeFunc) ID2TSEIdInfoFree);
- if (isError && ptr -> tses == NULL) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- /* end struct */
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
-
-erret:
- aip -> io_failure = TRUE;
- ptr = ID2ReplyGiToTSEIdFree(ptr);
- goto ret;
-}
-
-
-
-/**************************************************
-*
-* ID2ReplyGiToTSEIdAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2ReplyGiToTSEIdAsnWrite(ID2ReplyGiToTSEIdPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return FALSE;
- }
- }
-
- if (aip == NULL) {
- return FALSE;
- }
-
- atp = AsnLinkType(orig, ID2_REPLY_GI_TO_TSE_ID); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- av.intvalue = ptr -> gi;
- retval = AsnWrite(aip, ID2_REPLY_GI_TO_TSE_ID_gi, &av);
- if (ptr -> source != NULL) {
- av.ptrvalue = ptr -> source;
- retval = AsnWrite(aip, ID2_REPLY_GI_TO_TSE_ID_source, &av);
- }
- AsnGenericUserSeqOfAsnWrite(ptr -> tses, (AsnWriteFunc) ID2TSEIdInfoAsnWrite, aip, ID2_REPLY_GI_TO_TSE_ID_tses, ID2_REPLY_GI_TO_TSE_ID_tses_E);
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-
-/**************************************************
-*
-* ID2ReplyGetTSENew()
-*
-**************************************************/
-NLM_EXTERN
-ID2ReplyGetTSEPtr LIBCALL
-ID2ReplyGetTSENew(void)
-{
- ID2ReplyGetTSEPtr ptr = MemNew((size_t) sizeof(ID2ReplyGetTSE));
-
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2ReplyGetTSEFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2ReplyGetTSEPtr LIBCALL
-ID2ReplyGetTSEFree(ID2ReplyGetTSEPtr ptr)
-{
-
- if(ptr == NULL) {
- return NULL;
- }
- ID2TSEIdFree(ptr -> tse_id);
- ID2ReplyDataFree(ptr -> data);
- return MemFree(ptr);
-}
-
-
-/**************************************************
-*
-* ID2ReplyGetTSEAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2ReplyGetTSEPtr LIBCALL
-ID2ReplyGetTSEAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean isError = FALSE;
- AsnReadFunc func;
- ID2ReplyGetTSEPtr ptr;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2ReplyGetTSE ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_REPLY_GET_TSE);
- } else {
- atp = AsnLinkType(orig, ID2_REPLY_GET_TSE);
- }
- /* link in local tree */
- if (atp == NULL) {
- return NULL;
- }
-
- ptr = ID2ReplyGetTSENew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
- func = NULL;
-
- if (atp == ID2_REPLY_GET_TSE_tse_id) {
- ptr -> tse_id = ID2TSEIdAsnRead(aip, atp);
- if (aip -> io_failure) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2_REPLY_GET_TSE_data) {
- ptr -> data = ID2ReplyDataAsnRead(aip, atp);
- if (aip -> io_failure) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- /* end struct */
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
-
-erret:
- aip -> io_failure = TRUE;
- ptr = ID2ReplyGetTSEFree(ptr);
- goto ret;
-}
-
-
-
-/**************************************************
-*
-* ID2ReplyGetTSEAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2ReplyGetTSEAsnWrite(ID2ReplyGetTSEPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return FALSE;
- }
- }
-
- if (aip == NULL) {
- return FALSE;
- }
-
- atp = AsnLinkType(orig, ID2_REPLY_GET_TSE); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- if (ptr -> tse_id != NULL) {
- if ( ! ID2TSEIdAsnWrite(ptr -> tse_id, aip, ID2_REPLY_GET_TSE_tse_id)) {
- goto erret;
- }
- }
- if (ptr -> data != NULL) {
- if ( ! ID2ReplyDataAsnWrite(ptr -> data, aip, ID2_REPLY_GET_TSE_data)) {
- goto erret;
- }
- }
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-
-/**************************************************
-*
-* ID2SReplyGetTSEInfoNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2SReplyGetTSEInfoPtr LIBCALL
-ID2SReplyGetTSEInfoNew(void)
-{
- ID2SReplyGetTSEInfoPtr ptr = MemNew((size_t) sizeof(ID2SReplyGetTSEInfo));
-
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2SReplyGetTSEInfoFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2SReplyGetTSEInfoPtr LIBCALL
-ID2SReplyGetTSEInfoFree(ID2SReplyGetTSEInfoPtr ptr)
-{
-
- if(ptr == NULL) {
- return NULL;
- }
- ID2TSEIdFree(ptr -> tse_id);
- ID2ReplyDataFree(ptr -> info);
- return MemFree(ptr);
-}
-
-
-/**************************************************
-*
-* ID2SReplyGetTSEInfoAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2SReplyGetTSEInfoPtr LIBCALL
-ID2SReplyGetTSEInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean isError = FALSE;
- AsnReadFunc func;
- ID2SReplyGetTSEInfoPtr ptr;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2SReplyGetTSEInfo ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_REPLY_GET_TSE_INFO);
- } else {
- atp = AsnLinkType(orig, ID2S_REPLY_GET_TSE_INFO);
- }
- /* link in local tree */
- if (atp == NULL) {
- return NULL;
- }
-
- ptr = ID2SReplyGetTSEInfoNew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
- func = NULL;
-
- if (atp == ID2S_REPLY_GET_TSE_INFO_tse_id) {
- ptr -> tse_id = ID2TSEIdAsnRead(aip, atp);
- if (aip -> io_failure) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == GET_TSE_INFO_split_version) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> split_version = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2S_REPLY_GET_TSE_INFO_info) {
- ptr -> info = ID2ReplyDataAsnRead(aip, atp);
- if (aip -> io_failure) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- /* end struct */
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
-
-erret:
- aip -> io_failure = TRUE;
- ptr = ID2SReplyGetTSEInfoFree(ptr);
- goto ret;
-}
-
-
-
-/**************************************************
-*
-* ID2SReplyGetTSEInfoAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2SReplyGetTSEInfoAsnWrite(ID2SReplyGetTSEInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return FALSE;
- }
- }
-
- if (aip == NULL) {
- return FALSE;
- }
-
- atp = AsnLinkType(orig, ID2S_REPLY_GET_TSE_INFO); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- if (ptr -> tse_id != NULL) {
- if ( ! ID2TSEIdAsnWrite(ptr -> tse_id, aip, ID2S_REPLY_GET_TSE_INFO_tse_id)) {
- goto erret;
- }
- }
- av.intvalue = ptr -> split_version;
- retval = AsnWrite(aip, GET_TSE_INFO_split_version, &av);
- if (ptr -> info != NULL) {
- if ( ! ID2ReplyDataAsnWrite(ptr -> info, aip, ID2S_REPLY_GET_TSE_INFO_info)) {
- goto erret;
- }
- }
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-
-/**************************************************
-*
-* ID2SReplyGetChunkNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2SReplyGetChunkPtr LIBCALL
-ID2SReplyGetChunkNew(void)
-{
- ID2SReplyGetChunkPtr ptr = MemNew((size_t) sizeof(ID2SReplyGetChunk));
-
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2SReplyGetChunkFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2SReplyGetChunkPtr LIBCALL
-ID2SReplyGetChunkFree(ID2SReplyGetChunkPtr ptr)
-{
-
- if(ptr == NULL) {
- return NULL;
- }
- ID2TSEIdFree(ptr -> tse_id);
- ID2ReplyDataFree(ptr -> data);
- return MemFree(ptr);
-}
-
-
-/**************************************************
-*
-* ID2SReplyGetChunkAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2SReplyGetChunkPtr LIBCALL
-ID2SReplyGetChunkAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean isError = FALSE;
- AsnReadFunc func;
- ID2SReplyGetChunkPtr ptr;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2SReplyGetChunk ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_REPLY_GET_CHUNK);
- } else {
- atp = AsnLinkType(orig, ID2S_REPLY_GET_CHUNK);
- }
- /* link in local tree */
- if (atp == NULL) {
- return NULL;
- }
-
- ptr = ID2SReplyGetChunkNew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
- func = NULL;
-
- if (atp == ID2S_REPLY_GET_CHUNK_tse_id) {
- ptr -> tse_id = ID2TSEIdAsnRead(aip, atp);
- if (aip -> io_failure) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2S_REPLY_GET_CHUNK_chunk_id) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> chunk_id = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2S_REPLY_GET_CHUNK_data) {
- ptr -> data = ID2ReplyDataAsnRead(aip, atp);
- if (aip -> io_failure) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- /* end struct */
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
-
-erret:
- aip -> io_failure = TRUE;
- ptr = ID2SReplyGetChunkFree(ptr);
- goto ret;
-}
-
-
-
-/**************************************************
-*
-* ID2SReplyGetChunkAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2SReplyGetChunkAsnWrite(ID2SReplyGetChunkPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return FALSE;
- }
- }
-
- if (aip == NULL) {
- return FALSE;
- }
-
- atp = AsnLinkType(orig, ID2S_REPLY_GET_CHUNK); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- if (ptr -> tse_id != NULL) {
- if ( ! ID2TSEIdAsnWrite(ptr -> tse_id, aip, ID2S_REPLY_GET_CHUNK_tse_id)) {
- goto erret;
- }
- }
- av.intvalue = ptr -> chunk_id;
- retval = AsnWrite(aip, ID2S_REPLY_GET_CHUNK_chunk_id, &av);
- if (ptr -> data != NULL) {
- if ( ! ID2ReplyDataAsnWrite(ptr -> data, aip, ID2S_REPLY_GET_CHUNK_data)) {
- goto erret;
- }
- }
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-
-/**************************************************
-*
* ID2ErrorNew()
*
**************************************************/
@@ -4593,16 +3235,15 @@ erret:
/**************************************************
*
-* ID2TSEIdInfoNew()
+* ID2ReplyGetPackageNew()
*
**************************************************/
NLM_EXTERN
-ID2TSEIdInfoPtr LIBCALL
-ID2TSEIdInfoNew(void)
+ID2ReplyGetPackagePtr LIBCALL
+ID2ReplyGetPackageNew(void)
{
- ID2TSEIdInfoPtr ptr = MemNew((size_t) sizeof(ID2TSEIdInfo));
+ ID2ReplyGetPackagePtr ptr = MemNew((size_t) sizeof(ID2ReplyGetPackage));
- ptr -> split_version = 0;
return ptr;
}
@@ -4610,36 +3251,37 @@ ID2TSEIdInfoNew(void)
/**************************************************
*
-* ID2TSEIdInfoFree()
+* ID2ReplyGetPackageFree()
*
**************************************************/
NLM_EXTERN
-ID2TSEIdInfoPtr LIBCALL
-ID2TSEIdInfoFree(ID2TSEIdInfoPtr ptr)
+ID2ReplyGetPackagePtr LIBCALL
+ID2ReplyGetPackageFree(ID2ReplyGetPackagePtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- ID2TSEIdFree(ptr -> tse_id);
+ MemFree(ptr -> name);
+ ID2ParamsFree(ptr -> params);
return MemFree(ptr);
}
/**************************************************
*
-* ID2TSEIdInfoAsnRead()
+* ID2ReplyGetPackageAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2TSEIdInfoPtr LIBCALL
-ID2TSEIdInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyGetPackagePtr LIBCALL
+ID2ReplyGetPackageAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2TSEIdInfoPtr ptr;
+ ID2ReplyGetPackagePtr ptr;
if (! loaded)
{
@@ -4652,17 +3294,17 @@ ID2TSEIdInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2TSEIdInfo ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_TSE_ID_INFO);
+ if (orig == NULL) { /* ID2ReplyGetPackage ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_REPLY_GET_PACKAGE);
} else {
- atp = AsnLinkType(orig, ID2_TSE_ID_INFO);
+ atp = AsnLinkType(orig, ID2_REPLY_GET_PACKAGE);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2TSEIdInfoNew();
+ ptr = ID2ReplyGetPackageNew();
if (ptr == NULL) {
goto erret;
}
@@ -4673,18 +3315,18 @@ ID2TSEIdInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2_TSE_ID_INFO_tse_id) {
- ptr -> tse_id = ID2TSEIdAsnRead(aip, atp);
- if (aip -> io_failure) {
+ if (atp == ID2_REPLY_GET_PACKAGE_name) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
+ ptr -> name = av.ptrvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2_TSE_ID_INFO_split_version) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
+ if (atp == ID2_REPLY_GET_PACKAGE_params) {
+ ptr -> params = ID2ParamsAsnRead(aip, atp);
+ if (aip -> io_failure) {
goto erret;
}
- ptr -> split_version = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
@@ -4699,7 +3341,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2TSEIdInfoFree(ptr);
+ ptr = ID2ReplyGetPackageFree(ptr);
goto ret;
}
@@ -4707,11 +3349,11 @@ erret:
/**************************************************
*
-* ID2TSEIdInfoAsnWrite()
+* ID2ReplyGetPackageAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2TSEIdInfoAsnWrite(ID2TSEIdInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyGetPackageAsnWrite(ID2ReplyGetPackagePtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -4728,7 +3370,7 @@ ID2TSEIdInfoAsnWrite(ID2TSEIdInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
return FALSE;
}
- atp = AsnLinkType(orig, ID2_TSE_ID_INFO); /* link local tree */
+ atp = AsnLinkType(orig, ID2_REPLY_GET_PACKAGE); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -4738,13 +3380,15 @@ ID2TSEIdInfoAsnWrite(ID2TSEIdInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
goto erret;
}
- if (ptr -> tse_id != NULL) {
- if ( ! ID2TSEIdAsnWrite(ptr -> tse_id, aip, ID2_TSE_ID_INFO_tse_id)) {
+ if (ptr -> name != NULL) {
+ av.ptrvalue = ptr -> name;
+ retval = AsnWrite(aip, ID2_REPLY_GET_PACKAGE_name, &av);
+ }
+ if (ptr -> params != NULL) {
+ if ( ! ID2ParamsAsnWrite(ptr -> params, aip, ID2_REPLY_GET_PACKAGE_params)) {
goto erret;
}
}
- av.intvalue = ptr -> split_version;
- retval = AsnWrite(aip, ID2_TSE_ID_INFO_split_version, &av);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -4759,14 +3403,14 @@ erret:
/**************************************************
*
-* ID2ReplyDataNew()
+* ID2ReplyGetSeqIdNew()
*
**************************************************/
NLM_EXTERN
-ID2ReplyDataPtr LIBCALL
-ID2ReplyDataNew(void)
+ID2ReplyGetSeqIdPtr LIBCALL
+ID2ReplyGetSeqIdNew(void)
{
- ID2ReplyDataPtr ptr = MemNew((size_t) sizeof(ID2ReplyData));
+ ID2ReplyGetSeqIdPtr ptr = MemNew((size_t) sizeof(ID2ReplyGetSeqId));
return ptr;
@@ -4775,36 +3419,37 @@ ID2ReplyDataNew(void)
/**************************************************
*
-* ID2ReplyDataFree()
+* ID2ReplyGetSeqIdFree()
*
**************************************************/
NLM_EXTERN
-ID2ReplyDataPtr LIBCALL
-ID2ReplyDataFree(ID2ReplyDataPtr ptr)
+ID2ReplyGetSeqIdPtr LIBCALL
+ID2ReplyGetSeqIdFree(ID2ReplyGetSeqIdPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- AsnGenericBaseSeqOfFree(ptr -> data ,ASNCODE_BYTEVAL_SLOT);
+ ID2RequestGetSeqIdFree(ptr -> request);
+ AsnGenericChoiceSeqOfFree(ptr -> seq_id, (AsnOptFreeFunc) SeqIdFree);
return MemFree(ptr);
}
/**************************************************
*
-* ID2ReplyDataAsnRead()
+* ID2ReplyGetSeqIdAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2ReplyDataPtr LIBCALL
-ID2ReplyDataAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyGetSeqIdPtr LIBCALL
+ID2ReplyGetSeqIdAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2ReplyDataPtr ptr;
+ ID2ReplyGetSeqIdPtr ptr;
if (! loaded)
{
@@ -4817,17 +3462,17 @@ ID2ReplyDataAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2ReplyData ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_REPLY_DATA);
+ if (orig == NULL) { /* ID2ReplyGetSeqId ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_REPLY_GET_SEQ_ID);
} else {
- atp = AsnLinkType(orig, ID2_REPLY_DATA);
+ atp = AsnLinkType(orig, ID2_REPLY_GET_SEQ_ID);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2ReplyDataNew();
+ ptr = ID2ReplyGetSeqIdNew();
if (ptr == NULL) {
goto erret;
}
@@ -4838,30 +3483,16 @@ ID2ReplyDataAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2_REPLY_DATA_data_type) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> data_type = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2_REPLY_DATA_data_format) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> data_format = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2_REPLY_DATA_data_compression) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
+ if (atp == ID2_REPLY_GET_SEQ_ID_request) {
+ ptr -> request = ID2RequestGetSeqIdAsnRead(aip, atp);
+ if (aip -> io_failure) {
goto erret;
}
- ptr -> data_compression = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2_REPLY_DATA_data) {
- ptr -> data = AsnGenericBaseSeqOfAsnRead(aip, amp, atp, ASNCODE_BYTEVAL_SLOT, &isError);
- if (isError && ptr -> data == NULL) {
+ if (atp == ID2_REPLY_GET_SEQ_ID_seq_id) {
+ ptr -> seq_id = AsnGenericChoiceSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) SeqIdAsnRead, (AsnOptFreeFunc) SeqIdFree);
+ if (isError && ptr -> seq_id == NULL) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
@@ -4878,7 +3509,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2ReplyDataFree(ptr);
+ ptr = ID2ReplyGetSeqIdFree(ptr);
goto ret;
}
@@ -4886,11 +3517,11 @@ erret:
/**************************************************
*
-* ID2ReplyDataAsnWrite()
+* ID2ReplyGetSeqIdAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2ReplyDataAsnWrite(ID2ReplyDataPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyGetSeqIdAsnWrite(ID2ReplyGetSeqIdPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -4907,7 +3538,7 @@ ID2ReplyDataAsnWrite(ID2ReplyDataPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
return FALSE;
}
- atp = AsnLinkType(orig, ID2_REPLY_DATA); /* link local tree */
+ atp = AsnLinkType(orig, ID2_REPLY_GET_SEQ_ID); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -4917,174 +3548,12 @@ ID2ReplyDataAsnWrite(ID2ReplyDataPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
goto erret;
}
- av.intvalue = ptr -> data_type;
- retval = AsnWrite(aip, ID2_REPLY_DATA_data_type, &av);
- av.intvalue = ptr -> data_format;
- retval = AsnWrite(aip, ID2_REPLY_DATA_data_format, &av);
- av.intvalue = ptr -> data_compression;
- retval = AsnWrite(aip, ID2_REPLY_DATA_data_compression, &av);
- retval = AsnGenericBaseSeqOfAsnWrite(ptr -> data ,ASNCODE_BYTEVAL_SLOT, aip, ID2_REPLY_DATA_data, ID2_REPLY_DATA_data_E);
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-
-/**************************************************
-*
-* ID2SSplitInfoNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2SSplitInfoPtr LIBCALL
-ID2SSplitInfoNew(void)
-{
- ID2SSplitInfoPtr ptr = MemNew((size_t) sizeof(ID2SSplitInfo));
-
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2SSplitInfoFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2SSplitInfoPtr LIBCALL
-ID2SSplitInfoFree(ID2SSplitInfoPtr ptr)
-{
-
- if(ptr == NULL) {
- return NULL;
- }
- AsnGenericUserSeqOfFree(ptr -> bioseqs_info, (AsnOptFreeFunc) ID2SBioseqsInfoFree);
- AsnGenericUserSeqOfFree(ptr -> chunks, (AsnOptFreeFunc) ID2SChunkInfoFree);
- return MemFree(ptr);
-}
-
-
-/**************************************************
-*
-* ID2SSplitInfoAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2SSplitInfoPtr LIBCALL
-ID2SSplitInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean isError = FALSE;
- AsnReadFunc func;
- ID2SSplitInfoPtr ptr;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2SSplitInfo ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_SPLIT_INFO);
- } else {
- atp = AsnLinkType(orig, ID2S_SPLIT_INFO);
- }
- /* link in local tree */
- if (atp == NULL) {
- return NULL;
- }
-
- ptr = ID2SSplitInfoNew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
- func = NULL;
-
- if (atp == ID2S_SPLIT_INFO_bioseqs_info) {
- ptr -> bioseqs_info = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SBioseqsInfoAsnRead, (AsnOptFreeFunc) ID2SBioseqsInfoFree);
- if (isError && ptr -> bioseqs_info == NULL) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2S_SPLIT_INFO_chunks) {
- ptr -> chunks = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SChunkInfoAsnRead, (AsnOptFreeFunc) ID2SChunkInfoFree);
- if (isError && ptr -> chunks == NULL) {
+ if (ptr -> request != NULL) {
+ if ( ! ID2RequestGetSeqIdAsnWrite(ptr -> request, aip, ID2_REPLY_GET_SEQ_ID_request)) {
goto erret;
}
- atp = AsnReadId(aip,amp, atp);
- }
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- /* end struct */
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
-
-erret:
- aip -> io_failure = TRUE;
- ptr = ID2SSplitInfoFree(ptr);
- goto ret;
-}
-
-
-
-/**************************************************
-*
-* ID2SSplitInfoAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2SSplitInfoAsnWrite(ID2SSplitInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return FALSE;
- }
}
-
- if (aip == NULL) {
- return FALSE;
- }
-
- atp = AsnLinkType(orig, ID2S_SPLIT_INFO); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- AsnGenericUserSeqOfAsnWrite(ptr -> bioseqs_info, (AsnWriteFunc) ID2SBioseqsInfoAsnWrite, aip, ID2S_SPLIT_INFO_bioseqs_info, ID2S_SPLIT_INFO_bioseqs_info_E);
- AsnGenericUserSeqOfAsnWrite(ptr -> chunks, (AsnWriteFunc) ID2SChunkInfoAsnWrite, aip, ID2S_SPLIT_INFO_chunks, ID2S_SPLIT_INFO_chunks_E);
+ AsnGenericChoiceSeqOfAsnWrite(ptr -> seq_id, (AsnWriteFunc) SeqIdAsnWrite, aip, ID2_REPLY_GET_SEQ_ID_seq_id, ID2_REPLY_GET_SEQ_ID_seq_id_E);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -5099,15 +3568,16 @@ erret:
/**************************************************
*
-* ID2SBioseqsInfoNew()
+* ID2ReplyGetBlobIdNew()
*
**************************************************/
NLM_EXTERN
-ID2SBioseqsInfoPtr LIBCALL
-ID2SBioseqsInfoNew(void)
+ID2ReplyGetBlobIdPtr LIBCALL
+ID2ReplyGetBlobIdNew(void)
{
- ID2SBioseqsInfoPtr ptr = MemNew((size_t) sizeof(ID2SBioseqsInfo));
+ ID2ReplyGetBlobIdPtr ptr = MemNew((size_t) sizeof(ID2ReplyGetBlobId));
+ ptr -> split_version = 0;
return ptr;
}
@@ -5115,37 +3585,38 @@ ID2SBioseqsInfoNew(void)
/**************************************************
*
-* ID2SBioseqsInfoFree()
+* ID2ReplyGetBlobIdFree()
*
**************************************************/
NLM_EXTERN
-ID2SBioseqsInfoPtr LIBCALL
-ID2SBioseqsInfoFree(ID2SBioseqsInfoPtr ptr)
+ID2ReplyGetBlobIdPtr LIBCALL
+ID2ReplyGetBlobIdFree(ID2ReplyGetBlobIdPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- ID2SBioseqInfoFree(ptr -> info);
- ID2IdRangeFree(ptr -> bioseqs);
+ SeqIdFree(ptr -> seq_id);
+ ID2BlobIdFree(ptr -> blob_id);
+ AsnGenericUserSeqOfFree(ptr -> annot_info, (AsnOptFreeFunc) ID2SSeqAnnotInfoFree);
return MemFree(ptr);
}
/**************************************************
*
-* ID2SBioseqsInfoAsnRead()
+* ID2ReplyGetBlobIdAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2SBioseqsInfoPtr LIBCALL
-ID2SBioseqsInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyGetBlobIdPtr LIBCALL
+ID2ReplyGetBlobIdAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2SBioseqsInfoPtr ptr;
+ ID2ReplyGetBlobIdPtr ptr;
if (! loaded)
{
@@ -5158,17 +3629,17 @@ ID2SBioseqsInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2SBioseqsInfo ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_BIOSEQS_INFO);
+ if (orig == NULL) { /* ID2ReplyGetBlobId ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_REPLY_GET_BLOB_ID);
} else {
- atp = AsnLinkType(orig, ID2S_BIOSEQS_INFO);
+ atp = AsnLinkType(orig, ID2_REPLY_GET_BLOB_ID);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2SBioseqsInfoNew();
+ ptr = ID2ReplyGetBlobIdNew();
if (ptr == NULL) {
goto erret;
}
@@ -5179,184 +3650,30 @@ ID2SBioseqsInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2S_BIOSEQS_INFO_info) {
- ptr -> info = ID2SBioseqInfoAsnRead(aip, atp);
+ if (atp == ID2_REPLY_GET_BLOB_ID_seq_id) {
+ ptr -> seq_id = SeqIdAsnRead(aip, atp);
if (aip -> io_failure) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2S_BIOSEQS_INFO_bioseqs) {
- ptr -> bioseqs = ID2IdRangeAsnRead(aip, atp);
+ if (atp == ID2_REPLY_GET_BLOB_ID_blob_id) {
+ ptr -> blob_id = ID2BlobIdAsnRead(aip, atp);
if (aip -> io_failure) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
}
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- /* end struct */
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
-
-erret:
- aip -> io_failure = TRUE;
- ptr = ID2SBioseqsInfoFree(ptr);
- goto ret;
-}
-
-
-
-/**************************************************
-*
-* ID2SBioseqsInfoAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2SBioseqsInfoAsnWrite(ID2SBioseqsInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return FALSE;
- }
- }
-
- if (aip == NULL) {
- return FALSE;
- }
-
- atp = AsnLinkType(orig, ID2S_BIOSEQS_INFO); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- if (ptr -> info != NULL) {
- if ( ! ID2SBioseqInfoAsnWrite(ptr -> info, aip, ID2S_BIOSEQS_INFO_info)) {
- goto erret;
- }
- }
- if (ptr -> bioseqs != NULL) {
- if ( ! ID2IdRangeAsnWrite(ptr -> bioseqs, aip, ID2S_BIOSEQS_INFO_bioseqs)) {
- goto erret;
- }
- }
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-
-/**************************************************
-*
-* ID2SChunkInfoNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2SChunkInfoPtr LIBCALL
-ID2SChunkInfoNew(void)
-{
- ID2SChunkInfoPtr ptr = MemNew((size_t) sizeof(ID2SChunkInfo));
-
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2SChunkInfoFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2SChunkInfoPtr LIBCALL
-ID2SChunkInfoFree(ID2SChunkInfoPtr ptr)
-{
-
- if(ptr == NULL) {
- return NULL;
- }
- AsnGenericChoiceSeqOfFree(ptr -> content, (AsnOptFreeFunc) ID2SChunkContentFree);
- return MemFree(ptr);
-}
-
-
-/**************************************************
-*
-* ID2SChunkInfoAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2SChunkInfoPtr LIBCALL
-ID2SChunkInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean isError = FALSE;
- AsnReadFunc func;
- ID2SChunkInfoPtr ptr;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2SChunkInfo ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_CHUNK_INFO);
- } else {
- atp = AsnLinkType(orig, ID2S_CHUNK_INFO);
- }
- /* link in local tree */
- if (atp == NULL) {
- return NULL;
- }
-
- ptr = ID2SChunkInfoNew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
- func = NULL;
-
- if (atp == ID2S_CHUNK_INFO_id) {
+ if (atp == GET_BLOB_ID_split_version) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> id = av.intvalue;
+ ptr -> split_version = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2S_CHUNK_INFO_content) {
- ptr -> content = AsnGenericChoiceSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SChunkContentAsnRead, (AsnOptFreeFunc) ID2SChunkContentFree);
- if (isError && ptr -> content == NULL) {
+ if (atp == REPLY_GET_BLOB_ID_annot_info) {
+ ptr -> annot_info = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SSeqAnnotInfoAsnRead, (AsnOptFreeFunc) ID2SSeqAnnotInfoFree);
+ if (isError && ptr -> annot_info == NULL) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
@@ -5373,7 +3690,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2SChunkInfoFree(ptr);
+ ptr = ID2ReplyGetBlobIdFree(ptr);
goto ret;
}
@@ -5381,11 +3698,11 @@ erret:
/**************************************************
*
-* ID2SChunkInfoAsnWrite()
+* ID2ReplyGetBlobIdAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2SChunkInfoAsnWrite(ID2SChunkInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyGetBlobIdAsnWrite(ID2ReplyGetBlobIdPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -5402,7 +3719,7 @@ ID2SChunkInfoAsnWrite(ID2SChunkInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
return FALSE;
}
- atp = AsnLinkType(orig, ID2S_CHUNK_INFO); /* link local tree */
+ atp = AsnLinkType(orig, ID2_REPLY_GET_BLOB_ID); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -5412,9 +3729,19 @@ ID2SChunkInfoAsnWrite(ID2SChunkInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
goto erret;
}
- av.intvalue = ptr -> id;
- retval = AsnWrite(aip, ID2S_CHUNK_INFO_id, &av);
- AsnGenericChoiceSeqOfAsnWrite(ptr -> content, (AsnWriteFunc) ID2SChunkContentAsnWrite, aip, ID2S_CHUNK_INFO_content, ID2S_CHUNK_INFO_content_E);
+ if (ptr -> seq_id != NULL) {
+ if ( ! SeqIdAsnWrite(ptr -> seq_id, aip, ID2_REPLY_GET_BLOB_ID_seq_id)) {
+ goto erret;
+ }
+ }
+ if (ptr -> blob_id != NULL) {
+ if ( ! ID2BlobIdAsnWrite(ptr -> blob_id, aip, ID2_REPLY_GET_BLOB_ID_blob_id)) {
+ goto erret;
+ }
+ }
+ av.intvalue = ptr -> split_version;
+ retval = AsnWrite(aip, GET_BLOB_ID_split_version, &av);
+ AsnGenericUserSeqOfAsnWrite(ptr -> annot_info, (AsnWriteFunc) ID2SSeqAnnotInfoAsnWrite, aip, REPLY_GET_BLOB_ID_annot_info, REPLY_GET_BLOB_ID_annot_info_E);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -5429,14 +3756,14 @@ erret:
/**************************************************
*
-* ID2SBioseqInfoNew()
+* ID2ReplyGetBlobSeqIdsNew()
*
**************************************************/
NLM_EXTERN
-ID2SBioseqInfoPtr LIBCALL
-ID2SBioseqInfoNew(void)
+ID2ReplyGetBlobSeqIdsPtr LIBCALL
+ID2ReplyGetBlobSeqIdsNew(void)
{
- ID2SBioseqInfoPtr ptr = MemNew((size_t) sizeof(ID2SBioseqInfo));
+ ID2ReplyGetBlobSeqIdsPtr ptr = MemNew((size_t) sizeof(ID2ReplyGetBlobSeqIds));
return ptr;
@@ -5445,36 +3772,37 @@ ID2SBioseqInfoNew(void)
/**************************************************
*
-* ID2SBioseqInfoFree()
+* ID2ReplyGetBlobSeqIdsFree()
*
**************************************************/
NLM_EXTERN
-ID2SBioseqInfoPtr LIBCALL
-ID2SBioseqInfoFree(ID2SBioseqInfoPtr ptr)
+ID2ReplyGetBlobSeqIdsPtr LIBCALL
+ID2ReplyGetBlobSeqIdsFree(ID2ReplyGetBlobSeqIdsPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- ID2SSequenceSplitInfoFree(ptr -> sequence_split);
+ ID2BlobIdFree(ptr -> blob_id);
+ ID2ReplyDataFree(ptr -> ids);
return MemFree(ptr);
}
/**************************************************
*
-* ID2SBioseqInfoAsnRead()
+* ID2ReplyGetBlobSeqIdsAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2SBioseqInfoPtr LIBCALL
-ID2SBioseqInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyGetBlobSeqIdsPtr LIBCALL
+ID2ReplyGetBlobSeqIdsAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2SBioseqInfoPtr ptr;
+ ID2ReplyGetBlobSeqIdsPtr ptr;
if (! loaded)
{
@@ -5487,17 +3815,17 @@ ID2SBioseqInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2SBioseqInfo ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_BIOSEQ_INFO);
+ if (orig == NULL) { /* ID2ReplyGetBlobSeqIds ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_REPLY_GET_BLOB_SEQ_IDS);
} else {
- atp = AsnLinkType(orig, ID2S_BIOSEQ_INFO);
+ atp = AsnLinkType(orig, ID2_REPLY_GET_BLOB_SEQ_IDS);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2SBioseqInfoNew();
+ ptr = ID2ReplyGetBlobSeqIdsNew();
if (ptr == NULL) {
goto erret;
}
@@ -5508,22 +3836,15 @@ ID2SBioseqInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2S_BIOSEQ_INFO_gap_count) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> gap_count = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == BIOSEQ_INFO_seq_map_has_ref) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
+ if (atp == REPLY_GET_BLOB_SEQ_IDS_blob_id) {
+ ptr -> blob_id = ID2BlobIdAsnRead(aip, atp);
+ if (aip -> io_failure) {
goto erret;
}
- ptr -> seq_map_has_ref = av.boolvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2S_BIOSEQ_INFO_sequence_split) {
- ptr -> sequence_split = ID2SSequenceSplitInfoAsnRead(aip, atp);
+ if (atp == ID2_REPLY_GET_BLOB_SEQ_IDS_ids) {
+ ptr -> ids = ID2ReplyDataAsnRead(aip, atp);
if (aip -> io_failure) {
goto erret;
}
@@ -5541,7 +3862,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2SBioseqInfoFree(ptr);
+ ptr = ID2ReplyGetBlobSeqIdsFree(ptr);
goto ret;
}
@@ -5549,11 +3870,11 @@ erret:
/**************************************************
*
-* ID2SBioseqInfoAsnWrite()
+* ID2ReplyGetBlobSeqIdsAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2SBioseqInfoAsnWrite(ID2SBioseqInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyGetBlobSeqIdsAsnWrite(ID2ReplyGetBlobSeqIdsPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -5570,7 +3891,7 @@ ID2SBioseqInfoAsnWrite(ID2SBioseqInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
return FALSE;
}
- atp = AsnLinkType(orig, ID2S_BIOSEQ_INFO); /* link local tree */
+ atp = AsnLinkType(orig, ID2_REPLY_GET_BLOB_SEQ_IDS); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -5580,177 +3901,16 @@ ID2SBioseqInfoAsnWrite(ID2SBioseqInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
goto erret;
}
- av.intvalue = ptr -> gap_count;
- retval = AsnWrite(aip, ID2S_BIOSEQ_INFO_gap_count, &av);
- av.boolvalue = ptr -> seq_map_has_ref;
- retval = AsnWrite(aip, BIOSEQ_INFO_seq_map_has_ref, &av);
- if (ptr -> sequence_split != NULL) {
- if ( ! ID2SSequenceSplitInfoAsnWrite(ptr -> sequence_split, aip, ID2S_BIOSEQ_INFO_sequence_split)) {
- goto erret;
- }
- }
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-
-/**************************************************
-*
-* ID2IdRangeNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2IdRangePtr LIBCALL
-ID2IdRangeNew(void)
-{
- ID2IdRangePtr ptr = MemNew((size_t) sizeof(ID2IdRange));
-
- ptr -> count = 1;
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2IdRangeFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2IdRangePtr LIBCALL
-ID2IdRangeFree(ID2IdRangePtr ptr)
-{
-
- if(ptr == NULL) {
- return NULL;
- }
- return MemFree(ptr);
-}
-
-
-/**************************************************
-*
-* ID2IdRangeAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2IdRangePtr LIBCALL
-ID2IdRangeAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean isError = FALSE;
- AsnReadFunc func;
- ID2IdRangePtr ptr;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2IdRange ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_ID_RANGE);
- } else {
- atp = AsnLinkType(orig, ID2_ID_RANGE);
- }
- /* link in local tree */
- if (atp == NULL) {
- return NULL;
- }
-
- ptr = ID2IdRangeNew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
- func = NULL;
-
- if (atp == ID2_ID_RANGE_start) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
+ if (ptr -> blob_id != NULL) {
+ if ( ! ID2BlobIdAsnWrite(ptr -> blob_id, aip, REPLY_GET_BLOB_SEQ_IDS_blob_id)) {
goto erret;
}
- ptr -> start = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2_ID_RANGE_count) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
+ if (ptr -> ids != NULL) {
+ if ( ! ID2ReplyDataAsnWrite(ptr -> ids, aip, ID2_REPLY_GET_BLOB_SEQ_IDS_ids)) {
goto erret;
}
- ptr -> count = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
- }
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- /* end struct */
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
-
-erret:
- aip -> io_failure = TRUE;
- ptr = ID2IdRangeFree(ptr);
- goto ret;
-}
-
-
-
-/**************************************************
-*
-* ID2IdRangeAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2IdRangeAsnWrite(ID2IdRangePtr ptr, AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return FALSE;
- }
- }
-
- if (aip == NULL) {
- return FALSE;
- }
-
- atp = AsnLinkType(orig, ID2_ID_RANGE); /* link local tree */
- if (atp == NULL) {
- return FALSE;
}
-
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- av.intvalue = ptr -> start;
- retval = AsnWrite(aip, ID2_ID_RANGE_start, &av);
- av.intvalue = ptr -> count;
- retval = AsnWrite(aip, ID2_ID_RANGE_count, &av);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -5765,15 +3925,16 @@ erret:
/**************************************************
*
-* ID2SSequenceSplitInfoNew()
+* ID2ReplyGetBlobNew()
*
**************************************************/
NLM_EXTERN
-ID2SSequenceSplitInfoPtr LIBCALL
-ID2SSequenceSplitInfoNew(void)
+ID2ReplyGetBlobPtr LIBCALL
+ID2ReplyGetBlobNew(void)
{
- ID2SSequenceSplitInfoPtr ptr = MemNew((size_t) sizeof(ID2SSequenceSplitInfo));
+ ID2ReplyGetBlobPtr ptr = MemNew((size_t) sizeof(ID2ReplyGetBlob));
+ ptr -> split_version = 0;
return ptr;
}
@@ -5781,36 +3942,37 @@ ID2SSequenceSplitInfoNew(void)
/**************************************************
*
-* ID2SSequenceSplitInfoFree()
+* ID2ReplyGetBlobFree()
*
**************************************************/
NLM_EXTERN
-ID2SSequenceSplitInfoPtr LIBCALL
-ID2SSequenceSplitInfoFree(ID2SSequenceSplitInfoPtr ptr)
+ID2ReplyGetBlobPtr LIBCALL
+ID2ReplyGetBlobFree(ID2ReplyGetBlobPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- AsnGenericBaseSeqOfFree(ptr -> chunk_blocks ,ASNCODE_INTVAL_SLOT);
+ ID2BlobIdFree(ptr -> blob_id);
+ ID2ReplyDataFree(ptr -> data);
return MemFree(ptr);
}
/**************************************************
*
-* ID2SSequenceSplitInfoAsnRead()
+* ID2ReplyGetBlobAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2SSequenceSplitInfoPtr LIBCALL
-ID2SSequenceSplitInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyGetBlobPtr LIBCALL
+ID2ReplyGetBlobAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2SSequenceSplitInfoPtr ptr;
+ ID2ReplyGetBlobPtr ptr;
if (! loaded)
{
@@ -5823,17 +3985,17 @@ ID2SSequenceSplitInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2SSequenceSplitInfo ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_SEQUENCE_SPLIT_INFO);
+ if (orig == NULL) { /* ID2ReplyGetBlob ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_REPLY_GET_BLOB);
} else {
- atp = AsnLinkType(orig, ID2S_SEQUENCE_SPLIT_INFO);
+ atp = AsnLinkType(orig, ID2_REPLY_GET_BLOB);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2SSequenceSplitInfoNew();
+ ptr = ID2ReplyGetBlobNew();
if (ptr == NULL) {
goto erret;
}
@@ -5844,23 +4006,23 @@ ID2SSequenceSplitInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == SEQUENCE_SPLIT_INFO_block_size) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
+ if (atp == ID2_REPLY_GET_BLOB_blob_id) {
+ ptr -> blob_id = ID2BlobIdAsnRead(aip, atp);
+ if (aip -> io_failure) {
goto erret;
}
- ptr -> block_size = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == SPLIT_INFO_chunk_start) {
+ if (atp == REPLY_GET_BLOB_split_version) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> chunk_start = av.intvalue;
+ ptr -> split_version = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == SPLIT_INFO_chunk_blocks) {
- ptr -> chunk_blocks = AsnGenericBaseSeqOfAsnRead(aip, amp, atp, ASNCODE_INTVAL_SLOT, &isError);
- if (isError && ptr -> chunk_blocks == NULL) {
+ if (atp == ID2_REPLY_GET_BLOB_data) {
+ ptr -> data = ID2ReplyDataAsnRead(aip, atp);
+ if (aip -> io_failure) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
@@ -5877,7 +4039,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2SSequenceSplitInfoFree(ptr);
+ ptr = ID2ReplyGetBlobFree(ptr);
goto ret;
}
@@ -5885,11 +4047,11 @@ erret:
/**************************************************
*
-* ID2SSequenceSplitInfoAsnWrite()
+* ID2ReplyGetBlobAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2SSequenceSplitInfoAsnWrite(ID2SSequenceSplitInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyGetBlobAsnWrite(ID2ReplyGetBlobPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -5906,7 +4068,7 @@ ID2SSequenceSplitInfoAsnWrite(ID2SSequenceSplitInfoPtr ptr, AsnIoPtr aip, AsnTyp
return FALSE;
}
- atp = AsnLinkType(orig, ID2S_SEQUENCE_SPLIT_INFO); /* link local tree */
+ atp = AsnLinkType(orig, ID2_REPLY_GET_BLOB); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -5916,388 +4078,18 @@ ID2SSequenceSplitInfoAsnWrite(ID2SSequenceSplitInfoPtr ptr, AsnIoPtr aip, AsnTyp
goto erret;
}
- av.intvalue = ptr -> block_size;
- retval = AsnWrite(aip, SEQUENCE_SPLIT_INFO_block_size, &av);
- av.intvalue = ptr -> chunk_start;
- retval = AsnWrite(aip, SPLIT_INFO_chunk_start, &av);
- retval = AsnGenericBaseSeqOfAsnWrite(ptr -> chunk_blocks ,ASNCODE_INTVAL_SLOT, aip, SPLIT_INFO_chunk_blocks, SPLIT_INFO_chunk_blocks_E);
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-
-/**************************************************
-*
-* ID2SChunkContentFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2SChunkContentPtr LIBCALL
-ID2SChunkContentFree(ValNodePtr anp)
-{
- Pointer pnt;
-
- if (anp == NULL) {
- return NULL;
- }
-
- pnt = anp->data.ptrvalue;
- switch (anp->choice)
- {
- default:
- break;
- case ID2SChunkContent_seq_descr:
- ID2SSeqDescrInfoFree(anp -> data.ptrvalue);
- break;
- case ID2SChunkContent_seq_annot:
- ID2SSeqAnnotInfoFree(anp -> data.ptrvalue);
- break;
- case ID2SChunkContent_seq_assembly:
- ID2SSeqAssemblyInfoFree(anp -> data.ptrvalue);
- break;
- case ID2SChunkContent_seq_map:
- ID2SeqLocFree(anp -> data.ptrvalue);
- break;
- case ID2SChunkContent_seq_data:
- ID2SeqLocFree(anp -> data.ptrvalue);
- break;
- }
- return MemFree(anp);
-}
-
-
-/**************************************************
-*
-* ID2SChunkContentAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2SChunkContentPtr LIBCALL
-ID2SChunkContentAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- ValNodePtr anp;
- Uint1 choice;
- Boolean isError = FALSE;
- Boolean nullIsError = FALSE;
- AsnReadFunc func;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2SChunkContent ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_CHUNK_CONTENT);
- } else {
- atp = AsnLinkType(orig, ID2S_CHUNK_CONTENT); /* link in local tree */
- }
- if (atp == NULL) {
- return NULL;
- }
-
- anp = ValNodeNew(NULL);
- if (anp == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the CHOICE or OpenStruct value (nothing) */
- goto erret;
- }
-
- func = NULL;
-
- atp = AsnReadId(aip, amp, atp); /* find the choice */
- if (atp == NULL) {
- goto erret;
- }
- if (atp == ID2S_CHUNK_CONTENT_seq_descr) {
- choice = ID2SChunkContent_seq_descr;
- func = (AsnReadFunc) ID2SSeqDescrInfoAsnRead;
- }
- else if (atp == ID2S_CHUNK_CONTENT_seq_annot) {
- choice = ID2SChunkContent_seq_annot;
- func = (AsnReadFunc) ID2SSeqAnnotInfoAsnRead;
- }
- else if (atp == ID2S_CHUNK_CONTENT_seq_assembly) {
- choice = ID2SChunkContent_seq_assembly;
- func = (AsnReadFunc) ID2SSeqAssemblyInfoAsnRead;
- }
- else if (atp == ID2S_CHUNK_CONTENT_seq_map) {
- choice = ID2SChunkContent_seq_map;
- func = (AsnReadFunc) ID2SeqLocAsnRead;
- }
- else if (atp == ID2S_CHUNK_CONTENT_seq_data) {
- choice = ID2SChunkContent_seq_data;
- func = (AsnReadFunc) ID2SeqLocAsnRead;
- }
- anp->choice = choice;
- if (func != NULL)
- {
- anp->data.ptrvalue = (* func)(aip, atp);
- if (aip -> io_failure) goto erret;
-
- if (nullIsError && anp->data.ptrvalue == NULL) {
- goto erret;
- }
- }
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return anp;
-
-erret:
- anp = MemFree(anp);
- aip -> io_failure = TRUE;
- goto ret;
-}
-
-
-/**************************************************
-*
-* ID2SChunkContentAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2SChunkContentAsnWrite(ID2SChunkContentPtr anp, AsnIoPtr aip, AsnTypePtr orig)
-
-{
- DataVal av;
- AsnTypePtr atp, writetype = NULL;
- Pointer pnt;
- AsnWriteFunc func = NULL;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad())
- return FALSE;
- }
-
- if (aip == NULL)
- return FALSE;
-
- atp = AsnLinkType(orig, ID2S_CHUNK_CONTENT); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
-
- av.ptrvalue = (Pointer)anp;
- if (! AsnWriteChoice(aip, atp, (Int2)anp->choice, &av)) {
- goto erret;
- }
-
- pnt = anp->data.ptrvalue;
- switch (anp->choice)
- {
- case ID2SChunkContent_seq_descr:
- writetype = ID2S_CHUNK_CONTENT_seq_descr;
- func = (AsnWriteFunc) ID2SSeqDescrInfoAsnWrite;
- break;
- case ID2SChunkContent_seq_annot:
- writetype = ID2S_CHUNK_CONTENT_seq_annot;
- func = (AsnWriteFunc) ID2SSeqAnnotInfoAsnWrite;
- break;
- case ID2SChunkContent_seq_assembly:
- writetype = ID2S_CHUNK_CONTENT_seq_assembly;
- func = (AsnWriteFunc) ID2SSeqAssemblyInfoAsnWrite;
- break;
- case ID2SChunkContent_seq_map:
- writetype = ID2S_CHUNK_CONTENT_seq_map;
- func = (AsnWriteFunc) ID2SeqLocAsnWrite;
- break;
- case ID2SChunkContent_seq_data:
- writetype = ID2S_CHUNK_CONTENT_seq_data;
- func = (AsnWriteFunc) ID2SeqLocAsnWrite;
- break;
- }
- if (writetype != NULL) {
- retval = (* func)(pnt, aip, writetype); /* write it out */
- }
- if (!retval) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-/**************************************************
-*
-* ID2SSeqDescrInfoNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2SSeqDescrInfoPtr LIBCALL
-ID2SSeqDescrInfoNew(void)
-{
- ID2SSeqDescrInfoPtr ptr = MemNew((size_t) sizeof(ID2SSeqDescrInfo));
-
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2SSeqDescrInfoFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2SSeqDescrInfoPtr LIBCALL
-ID2SSeqDescrInfoFree(ID2SSeqDescrInfoPtr ptr)
-{
-
- if(ptr == NULL) {
- return NULL;
- }
- AsnGenericUserSeqOfFree(ptr -> bioseqs, (AsnOptFreeFunc) ID2IdRangeFree);
- AsnGenericUserSeqOfFree(ptr -> bioseq_sets, (AsnOptFreeFunc) ID2IdRangeFree);
- return MemFree(ptr);
-}
-
-
-/**************************************************
-*
-* ID2SSeqDescrInfoAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2SSeqDescrInfoPtr LIBCALL
-ID2SSeqDescrInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean isError = FALSE;
- AsnReadFunc func;
- ID2SSeqDescrInfoPtr ptr;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2SSeqDescrInfo ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_SEQ_DESCR_INFO);
- } else {
- atp = AsnLinkType(orig, ID2S_SEQ_DESCR_INFO);
- }
- /* link in local tree */
- if (atp == NULL) {
- return NULL;
- }
-
- ptr = ID2SSeqDescrInfoNew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
- func = NULL;
-
- if (atp == ID2S_SEQ_DESCR_INFO_type_mask) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
+ if (ptr -> blob_id != NULL) {
+ if ( ! ID2BlobIdAsnWrite(ptr -> blob_id, aip, ID2_REPLY_GET_BLOB_blob_id)) {
goto erret;
}
- ptr -> type_mask = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2S_SEQ_DESCR_INFO_bioseqs) {
- ptr -> bioseqs = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2IdRangeAsnRead, (AsnOptFreeFunc) ID2IdRangeFree);
- if (isError && ptr -> bioseqs == NULL) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2S_SEQ_DESCR_INFO_bioseq_sets) {
- ptr -> bioseq_sets = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2IdRangeAsnRead, (AsnOptFreeFunc) ID2IdRangeFree);
- if (isError && ptr -> bioseq_sets == NULL) {
+ av.intvalue = ptr -> split_version;
+ retval = AsnWrite(aip, REPLY_GET_BLOB_split_version, &av);
+ if (ptr -> data != NULL) {
+ if ( ! ID2ReplyDataAsnWrite(ptr -> data, aip, ID2_REPLY_GET_BLOB_data)) {
goto erret;
}
- atp = AsnReadId(aip,amp, atp);
- }
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- /* end struct */
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
-
-erret:
- aip -> io_failure = TRUE;
- ptr = ID2SSeqDescrInfoFree(ptr);
- goto ret;
-}
-
-
-
-/**************************************************
-*
-* ID2SSeqDescrInfoAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2SSeqDescrInfoAsnWrite(ID2SSeqDescrInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return FALSE;
- }
}
-
- if (aip == NULL) {
- return FALSE;
- }
-
- atp = AsnLinkType(orig, ID2S_SEQ_DESCR_INFO); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- av.intvalue = ptr -> type_mask;
- retval = AsnWrite(aip, ID2S_SEQ_DESCR_INFO_type_mask, &av);
- AsnGenericUserSeqOfAsnWrite(ptr -> bioseqs, (AsnWriteFunc) ID2IdRangeAsnWrite, aip, ID2S_SEQ_DESCR_INFO_bioseqs, ID2S_SEQ_DESCR_INFO_bioseqs_E);
- AsnGenericUserSeqOfAsnWrite(ptr -> bioseq_sets, (AsnWriteFunc) ID2IdRangeAsnWrite, aip, ID2S_SEQ_DESCR_INFO_bioseq_sets, SEQ_DESCR_INFO_bioseq_sets_E);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -6312,14 +4104,14 @@ erret:
/**************************************************
*
-* ID2SSeqAnnotInfoNew()
+* ID2ReplyReGetBlobNew()
*
**************************************************/
NLM_EXTERN
-ID2SSeqAnnotInfoPtr LIBCALL
-ID2SSeqAnnotInfoNew(void)
+ID2ReplyReGetBlobPtr LIBCALL
+ID2ReplyReGetBlobNew(void)
{
- ID2SSeqAnnotInfoPtr ptr = MemNew((size_t) sizeof(ID2SSeqAnnotInfo));
+ ID2ReplyReGetBlobPtr ptr = MemNew((size_t) sizeof(ID2ReplyReGetBlob));
return ptr;
@@ -6328,38 +4120,37 @@ ID2SSeqAnnotInfoNew(void)
/**************************************************
*
-* ID2SSeqAnnotInfoFree()
+* ID2ReplyReGetBlobFree()
*
**************************************************/
NLM_EXTERN
-ID2SSeqAnnotInfoPtr LIBCALL
-ID2SSeqAnnotInfoFree(ID2SSeqAnnotInfoPtr ptr)
+ID2ReplyReGetBlobPtr LIBCALL
+ID2ReplyReGetBlobFree(ID2ReplyReGetBlobPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- MemFree(ptr -> name);
- AsnGenericUserSeqOfFree(ptr -> feat, (AsnOptFreeFunc) ID2SFeatTypeInfoFree);
- ID2SeqLocFree(ptr -> seq_loc);
+ ID2BlobIdFree(ptr -> blob_id);
+ ID2ReplyDataFree(ptr -> data);
return MemFree(ptr);
}
/**************************************************
*
-* ID2SSeqAnnotInfoAsnRead()
+* ID2ReplyReGetBlobAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2SSeqAnnotInfoPtr LIBCALL
-ID2SSeqAnnotInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyReGetBlobPtr LIBCALL
+ID2ReplyReGetBlobAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2SSeqAnnotInfoPtr ptr;
+ ID2ReplyReGetBlobPtr ptr;
if (! loaded)
{
@@ -6372,17 +4163,17 @@ ID2SSeqAnnotInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2SSeqAnnotInfo ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_SEQ_ANNOT_INFO);
+ if (orig == NULL) { /* ID2ReplyReGetBlob ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_REPLY_REGET_BLOB);
} else {
- atp = AsnLinkType(orig, ID2S_SEQ_ANNOT_INFO);
+ atp = AsnLinkType(orig, ID2_REPLY_REGET_BLOB);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2SSeqAnnotInfoNew();
+ ptr = ID2ReplyReGetBlobNew();
if (ptr == NULL) {
goto erret;
}
@@ -6393,36 +4184,29 @@ ID2SSeqAnnotInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2S_SEQ_ANNOT_INFO_name) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
+ if (atp == ID2_REPLY_REGET_BLOB_blob_id) {
+ ptr -> blob_id = ID2BlobIdAsnRead(aip, atp);
+ if (aip -> io_failure) {
goto erret;
}
- ptr -> name = av.ptrvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2S_SEQ_ANNOT_INFO_align) {
+ if (atp == REPLY_REGET_BLOB_split_version) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> align = av.boolvalue;
+ ptr -> split_version = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2S_SEQ_ANNOT_INFO_graph) {
+ if (atp == ID2_REPLY_REGET_BLOB_offset) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> graph = av.boolvalue;
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2S_SEQ_ANNOT_INFO_feat) {
- ptr -> feat = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SFeatTypeInfoAsnRead, (AsnOptFreeFunc) ID2SFeatTypeInfoFree);
- if (isError && ptr -> feat == NULL) {
- goto erret;
- }
+ ptr -> offset = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2S_SEQ_ANNOT_INFO_seq_loc) {
- ptr -> seq_loc = ID2SeqLocAsnRead(aip, atp);
+ if (atp == ID2_REPLY_REGET_BLOB_data) {
+ ptr -> data = ID2ReplyDataAsnRead(aip, atp);
if (aip -> io_failure) {
goto erret;
}
@@ -6440,7 +4224,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2SSeqAnnotInfoFree(ptr);
+ ptr = ID2ReplyReGetBlobFree(ptr);
goto ret;
}
@@ -6448,11 +4232,11 @@ erret:
/**************************************************
*
-* ID2SSeqAnnotInfoAsnWrite()
+* ID2ReplyReGetBlobAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2SSeqAnnotInfoAsnWrite(ID2SSeqAnnotInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyReGetBlobAsnWrite(ID2ReplyReGetBlobPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -6469,7 +4253,7 @@ ID2SSeqAnnotInfoAsnWrite(ID2SSeqAnnotInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
return FALSE;
}
- atp = AsnLinkType(orig, ID2S_SEQ_ANNOT_INFO); /* link local tree */
+ atp = AsnLinkType(orig, ID2_REPLY_REGET_BLOB); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -6479,17 +4263,17 @@ ID2SSeqAnnotInfoAsnWrite(ID2SSeqAnnotInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
goto erret;
}
- if (ptr -> name != NULL) {
- av.ptrvalue = ptr -> name;
- retval = AsnWrite(aip, ID2S_SEQ_ANNOT_INFO_name, &av);
- }
- av.boolvalue = ptr -> align;
- retval = AsnWrite(aip, ID2S_SEQ_ANNOT_INFO_align, &av);
- av.boolvalue = ptr -> graph;
- retval = AsnWrite(aip, ID2S_SEQ_ANNOT_INFO_graph, &av);
- AsnGenericUserSeqOfAsnWrite(ptr -> feat, (AsnWriteFunc) ID2SFeatTypeInfoAsnWrite, aip, ID2S_SEQ_ANNOT_INFO_feat, ID2S_SEQ_ANNOT_INFO_feat_E);
- if (ptr -> seq_loc != NULL) {
- if ( ! ID2SeqLocAsnWrite(ptr -> seq_loc, aip, ID2S_SEQ_ANNOT_INFO_seq_loc)) {
+ if (ptr -> blob_id != NULL) {
+ if ( ! ID2BlobIdAsnWrite(ptr -> blob_id, aip, ID2_REPLY_REGET_BLOB_blob_id)) {
+ goto erret;
+ }
+ }
+ av.intvalue = ptr -> split_version;
+ retval = AsnWrite(aip, REPLY_REGET_BLOB_split_version, &av);
+ av.intvalue = ptr -> offset;
+ retval = AsnWrite(aip, ID2_REPLY_REGET_BLOB_offset, &av);
+ if (ptr -> data != NULL) {
+ if ( ! ID2ReplyDataAsnWrite(ptr -> data, aip, ID2_REPLY_REGET_BLOB_data)) {
goto erret;
}
}
@@ -6507,14 +4291,14 @@ erret:
/**************************************************
*
-* ID2SSeqAssemblyInfoNew()
+* ID2SReplyGetSplitInfoNew()
*
**************************************************/
NLM_EXTERN
-ID2SSeqAssemblyInfoPtr LIBCALL
-ID2SSeqAssemblyInfoNew(void)
+ID2SReplyGetSplitInfoPtr LIBCALL
+ID2SReplyGetSplitInfoNew(void)
{
- ID2SSeqAssemblyInfoPtr ptr = MemNew((size_t) sizeof(ID2SSeqAssemblyInfo));
+ ID2SReplyGetSplitInfoPtr ptr = MemNew((size_t) sizeof(ID2SReplyGetSplitInfo));
return ptr;
@@ -6523,36 +4307,37 @@ ID2SSeqAssemblyInfoNew(void)
/**************************************************
*
-* ID2SSeqAssemblyInfoFree()
+* ID2SReplyGetSplitInfoFree()
*
**************************************************/
NLM_EXTERN
-ID2SSeqAssemblyInfoPtr LIBCALL
-ID2SSeqAssemblyInfoFree(ID2SSeqAssemblyInfoPtr ptr)
+ID2SReplyGetSplitInfoPtr LIBCALL
+ID2SReplyGetSplitInfoFree(ID2SReplyGetSplitInfoPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- AsnGenericUserSeqOfFree(ptr -> bioseqs, (AsnOptFreeFunc) ID2IdRangeFree);
+ ID2BlobIdFree(ptr -> blob_id);
+ ID2ReplyDataFree(ptr -> data);
return MemFree(ptr);
}
/**************************************************
*
-* ID2SSeqAssemblyInfoAsnRead()
+* ID2SReplyGetSplitInfoAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2SSeqAssemblyInfoPtr LIBCALL
-ID2SSeqAssemblyInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2SReplyGetSplitInfoPtr LIBCALL
+ID2SReplyGetSplitInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2SSeqAssemblyInfoPtr ptr;
+ ID2SReplyGetSplitInfoPtr ptr;
if (! loaded)
{
@@ -6565,17 +4350,17 @@ ID2SSeqAssemblyInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2SSeqAssemblyInfo ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_SEQ_ASSEMBLY_INFO);
+ if (orig == NULL) { /* ID2SReplyGetSplitInfo ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_REPLY_GET_SPLIT_INFO);
} else {
- atp = AsnLinkType(orig, ID2S_SEQ_ASSEMBLY_INFO);
+ atp = AsnLinkType(orig, ID2S_REPLY_GET_SPLIT_INFO);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2SSeqAssemblyInfoNew();
+ ptr = ID2SReplyGetSplitInfoNew();
if (ptr == NULL) {
goto erret;
}
@@ -6586,168 +4371,23 @@ ID2SSeqAssemblyInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2S_SEQ_ASSEMBLY_INFO_bioseqs) {
- ptr -> bioseqs = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2IdRangeAsnRead, (AsnOptFreeFunc) ID2IdRangeFree);
- if (isError && ptr -> bioseqs == NULL) {
+ if (atp == REPLY_GET_SPLIT_INFO_blob_id) {
+ ptr -> blob_id = ID2BlobIdAsnRead(aip, atp);
+ if (aip -> io_failure) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
}
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- /* end struct */
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
-
-erret:
- aip -> io_failure = TRUE;
- ptr = ID2SSeqAssemblyInfoFree(ptr);
- goto ret;
-}
-
-
-
-/**************************************************
-*
-* ID2SSeqAssemblyInfoAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2SSeqAssemblyInfoAsnWrite(ID2SSeqAssemblyInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return FALSE;
- }
- }
-
- if (aip == NULL) {
- return FALSE;
- }
-
- atp = AsnLinkType(orig, ID2S_SEQ_ASSEMBLY_INFO); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- AsnGenericUserSeqOfAsnWrite(ptr -> bioseqs, (AsnWriteFunc) ID2IdRangeAsnWrite, aip, ID2S_SEQ_ASSEMBLY_INFO_bioseqs, SEQ_ASSEMBLY_INFO_bioseqs_E);
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-
-/**************************************************
-*
-* ID2SFeatTypeInfoNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2SFeatTypeInfoPtr LIBCALL
-ID2SFeatTypeInfoNew(void)
-{
- ID2SFeatTypeInfoPtr ptr = MemNew((size_t) sizeof(ID2SFeatTypeInfo));
-
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2SFeatTypeInfoFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2SFeatTypeInfoPtr LIBCALL
-ID2SFeatTypeInfoFree(ID2SFeatTypeInfoPtr ptr)
-{
-
- if(ptr == NULL) {
- return NULL;
- }
- AsnGenericBaseSeqOfFree(ptr -> subtypes ,ASNCODE_INTVAL_SLOT);
- return MemFree(ptr);
-}
-
-
-/**************************************************
-*
-* ID2SFeatTypeInfoAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2SFeatTypeInfoPtr LIBCALL
-ID2SFeatTypeInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean isError = FALSE;
- AsnReadFunc func;
- ID2SFeatTypeInfoPtr ptr;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2SFeatTypeInfo ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_FEAT_TYPE_INFO);
- } else {
- atp = AsnLinkType(orig, ID2S_FEAT_TYPE_INFO);
- }
- /* link in local tree */
- if (atp == NULL) {
- return NULL;
- }
-
- ptr = ID2SFeatTypeInfoNew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
- func = NULL;
-
- if (atp == ID2S_FEAT_TYPE_INFO_type) {
+ if (atp == GET_SPLIT_INFO_split_version) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> type = av.intvalue;
+ ptr -> split_version = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2S_FEAT_TYPE_INFO_subtypes) {
- ptr -> subtypes = AsnGenericBaseSeqOfAsnRead(aip, amp, atp, ASNCODE_INTVAL_SLOT, &isError);
- if (isError && ptr -> subtypes == NULL) {
+ if (atp == ID2S_REPLY_GET_SPLIT_INFO_data) {
+ ptr -> data = ID2ReplyDataAsnRead(aip, atp);
+ if (aip -> io_failure) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
@@ -6764,7 +4404,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2SFeatTypeInfoFree(ptr);
+ ptr = ID2SReplyGetSplitInfoFree(ptr);
goto ret;
}
@@ -6772,11 +4412,11 @@ erret:
/**************************************************
*
-* ID2SFeatTypeInfoAsnWrite()
+* ID2SReplyGetSplitInfoAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2SFeatTypeInfoAsnWrite(ID2SFeatTypeInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2SReplyGetSplitInfoAsnWrite(ID2SReplyGetSplitInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -6793,7 +4433,7 @@ ID2SFeatTypeInfoAsnWrite(ID2SFeatTypeInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
return FALSE;
}
- atp = AsnLinkType(orig, ID2S_FEAT_TYPE_INFO); /* link local tree */
+ atp = AsnLinkType(orig, ID2S_REPLY_GET_SPLIT_INFO); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -6803,161 +4443,18 @@ ID2SFeatTypeInfoAsnWrite(ID2SFeatTypeInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
goto erret;
}
- av.intvalue = ptr -> type;
- retval = AsnWrite(aip, ID2S_FEAT_TYPE_INFO_type, &av);
- retval = AsnGenericBaseSeqOfAsnWrite(ptr -> subtypes ,ASNCODE_INTVAL_SLOT, aip, ID2S_FEAT_TYPE_INFO_subtypes, ID2S_FEAT_TYPE_INFO_subtypes_E);
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-
-/**************************************************
-*
-* ID2SChunkNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2SChunkPtr LIBCALL
-ID2SChunkNew(void)
-{
- ID2SChunkPtr ptr = MemNew((size_t) sizeof(ID2SChunk));
-
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2SChunkFree()
-*
-**************************************************/
-NLM_EXTERN
-ID2SChunkPtr LIBCALL
-ID2SChunkFree(ID2SChunkPtr ptr)
-{
-
- if(ptr == NULL) {
- return NULL;
- }
- AsnGenericUserSeqOfFree(ptr -> data, (AsnOptFreeFunc) ID2SChunkDataFree);
- return MemFree(ptr);
-}
-
-
-/**************************************************
-*
-* ID2SChunkAsnRead()
-*
-**************************************************/
-NLM_EXTERN
-ID2SChunkPtr LIBCALL
-ID2SChunkAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean isError = FALSE;
- AsnReadFunc func;
- ID2SChunkPtr ptr;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* ID2SChunk ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_CHUNK);
- } else {
- atp = AsnLinkType(orig, ID2S_CHUNK);
- }
- /* link in local tree */
- if (atp == NULL) {
- return NULL;
- }
-
- ptr = ID2SChunkNew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
- func = NULL;
-
- if (atp == ID2S_CHUNK_data) {
- ptr -> data = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SChunkDataAsnRead, (AsnOptFreeFunc) ID2SChunkDataFree);
- if (isError && ptr -> data == NULL) {
+ if (ptr -> blob_id != NULL) {
+ if ( ! ID2BlobIdAsnWrite(ptr -> blob_id, aip, REPLY_GET_SPLIT_INFO_blob_id)) {
goto erret;
}
- atp = AsnReadId(aip,amp, atp);
- }
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
}
- /* end struct */
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return ptr;
-
-erret:
- aip -> io_failure = TRUE;
- ptr = ID2SChunkFree(ptr);
- goto ret;
-}
-
-
-
-/**************************************************
-*
-* ID2SChunkAsnWrite()
-*
-**************************************************/
-NLM_EXTERN Boolean LIBCALL
-ID2SChunkAsnWrite(ID2SChunkPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return FALSE;
+ av.intvalue = ptr -> split_version;
+ retval = AsnWrite(aip, GET_SPLIT_INFO_split_version, &av);
+ if (ptr -> data != NULL) {
+ if ( ! ID2ReplyDataAsnWrite(ptr -> data, aip, ID2S_REPLY_GET_SPLIT_INFO_data)) {
+ goto erret;
}
}
-
- if (aip == NULL) {
- return FALSE;
- }
-
- atp = AsnLinkType(orig, ID2S_CHUNK); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- AsnGenericUserSeqOfAsnWrite(ptr -> data, (AsnWriteFunc) ID2SChunkDataAsnWrite, aip, ID2S_CHUNK_data, ID2S_CHUNK_data_E);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -6972,14 +4469,14 @@ erret:
/**************************************************
*
-* ID2SChunkDataNew()
+* ID2SReplyGetChunkNew()
*
**************************************************/
NLM_EXTERN
-ID2SChunkDataPtr LIBCALL
-ID2SChunkDataNew(void)
+ID2SReplyGetChunkPtr LIBCALL
+ID2SReplyGetChunkNew(void)
{
- ID2SChunkDataPtr ptr = MemNew((size_t) sizeof(ID2SChunkData));
+ ID2SReplyGetChunkPtr ptr = MemNew((size_t) sizeof(ID2SReplyGetChunk));
return ptr;
@@ -6988,66 +4485,37 @@ ID2SChunkDataNew(void)
/**************************************************
*
-* ID2SChunkDataFree()
+* ID2SReplyGetChunkFree()
*
**************************************************/
NLM_EXTERN
-ID2SChunkDataPtr LIBCALL
-ID2SChunkDataFree(ID2SChunkDataPtr ptr)
+ID2SReplyGetChunkPtr LIBCALL
+ID2SReplyGetChunkFree(ID2SReplyGetChunkPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- Id_idFree(ptr -> Id_id);
- AsnGenericChoiceSeqOfFree(ptr -> descrs, (AsnOptFreeFunc) SeqDescrFree);
- AsnGenericUserSeqOfFree(ptr -> annots, (AsnOptFreeFunc) SeqAnnotFree);
- AsnGenericUserSeqOfFree(ptr -> assembly, (AsnOptFreeFunc) SeqAlignFree);
- AsnGenericUserSeqOfFree(ptr -> seq_map, (AsnOptFreeFunc) SeqLiteralFree);
- AsnGenericUserSeqOfFree(ptr -> seq_data, (AsnOptFreeFunc) SeqLiteralFree);
+ ID2BlobIdFree(ptr -> blob_id);
+ ID2ReplyDataFree(ptr -> data);
return MemFree(ptr);
}
/**************************************************
*
-* Id_idFree()
-*
-**************************************************/
-static
-Id_idPtr LIBCALL
-Id_idFree(ValNodePtr anp)
-{
- Pointer pnt;
-
- if (anp == NULL) {
- return NULL;
- }
-
- pnt = anp->data.ptrvalue;
- switch (anp->choice)
- {
- default:
- break;
- }
- return MemFree(anp);
-}
-
-
-/**************************************************
-*
-* ID2SChunkDataAsnRead()
+* ID2SReplyGetChunkAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2SChunkDataPtr LIBCALL
-ID2SChunkDataAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2SReplyGetChunkPtr LIBCALL
+ID2SReplyGetChunkAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2SChunkDataPtr ptr;
+ ID2SReplyGetChunkPtr ptr;
if (! loaded)
{
@@ -7060,17 +4528,17 @@ ID2SChunkDataAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2SChunkData ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_CHUNK_DATA);
+ if (orig == NULL) { /* ID2SReplyGetChunk ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_REPLY_GET_CHUNK);
} else {
- atp = AsnLinkType(orig, ID2S_CHUNK_DATA);
+ atp = AsnLinkType(orig, ID2S_REPLY_GET_CHUNK);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2SChunkDataNew();
+ ptr = ID2SReplyGetChunkNew();
if (ptr == NULL) {
goto erret;
}
@@ -7081,44 +4549,23 @@ ID2SChunkDataAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2S_CHUNK_DATA_id) {
- ptr -> Id_id = Id_idAsnRead(aip, atp);
+ if (atp == ID2S_REPLY_GET_CHUNK_blob_id) {
+ ptr -> blob_id = ID2BlobIdAsnRead(aip, atp);
if (aip -> io_failure) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2S_CHUNK_DATA_descrs) {
- ptr -> descrs = AsnGenericChoiceSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) SeqDescrAsnRead, (AsnOptFreeFunc) SeqDescrFree);
- if (isError && ptr -> descrs == NULL) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2S_CHUNK_DATA_annots) {
- ptr -> annots = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) SeqAnnotAsnRead, (AsnOptFreeFunc) SeqAnnotFree);
- if (isError && ptr -> annots == NULL) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2S_CHUNK_DATA_assembly) {
- ptr -> assembly = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) SeqAlignAsnRead, (AsnOptFreeFunc) SeqAlignFree);
- if (isError && ptr -> assembly == NULL) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2S_CHUNK_DATA_seq_map) {
- ptr -> seq_map = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) SeqLiteralAsnRead, (AsnOptFreeFunc) SeqLiteralFree);
- if (isError && ptr -> seq_map == NULL) {
+ if (atp == ID2S_REPLY_GET_CHUNK_chunk_id) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
+ ptr -> chunk_id = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2S_CHUNK_DATA_seq_data) {
- ptr -> seq_data = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) SeqLiteralAsnRead, (AsnOptFreeFunc) SeqLiteralFree);
- if (isError && ptr -> seq_data == NULL) {
+ if (atp == ID2S_REPLY_GET_CHUNK_data) {
+ ptr -> data = ID2ReplyDataAsnRead(aip, atp);
+ if (aip -> io_failure) {
goto erret;
}
atp = AsnReadId(aip,amp, atp);
@@ -7135,7 +4582,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2SChunkDataFree(ptr);
+ ptr = ID2SReplyGetChunkFree(ptr);
goto ret;
}
@@ -7143,98 +4590,11 @@ erret:
/**************************************************
*
-* Id_idAsnRead()
-*
-**************************************************/
-static
-Id_idPtr LIBCALL
-Id_idAsnRead(AsnIoPtr aip, AsnTypePtr orig)
-{
- DataVal av;
- AsnTypePtr atp;
- ValNodePtr anp;
- Uint1 choice;
- Boolean isError = FALSE;
- Boolean nullIsError = FALSE;
- AsnReadFunc func;
-
- if (! loaded)
- {
- if (! id2genAsnLoad()) {
- return NULL;
- }
- }
-
- if (aip == NULL) {
- return NULL;
- }
-
- if (orig == NULL) { /* Id_id ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2S_CHUNK_DATA_id);
- } else {
- atp = AsnLinkType(orig, ID2S_CHUNK_DATA_id); /* link in local tree */
- }
- if (atp == NULL) {
- return NULL;
- }
-
- anp = ValNodeNew(NULL);
- if (anp == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the CHOICE or OpenStruct value (nothing) */
- goto erret;
- }
-
- func = NULL;
-
- atp = AsnReadId(aip, amp, atp); /* find the choice */
- if (atp == NULL) {
- goto erret;
- }
- if (atp == ID2S_CHUNK_DATA_id_bioseq_set) {
- choice = Id_id_bioseq_set;
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- anp->data.intvalue = av.intvalue;
- }
- else if (atp == ID2S_CHUNK_DATA_id_gi) {
- choice = Id_id_gi;
- if (AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- anp->data.intvalue = av.intvalue;
- }
- anp->choice = choice;
- if (func != NULL)
- {
- anp->data.ptrvalue = (* func)(aip, atp);
- if (aip -> io_failure) goto erret;
-
- if (nullIsError && anp->data.ptrvalue == NULL) {
- goto erret;
- }
- }
-
-ret:
- AsnUnlinkType(orig); /* unlink local tree */
- return anp;
-
-erret:
- anp = MemFree(anp);
- aip -> io_failure = TRUE;
- goto ret;
-}
-
-
-/**************************************************
-*
-* ID2SChunkDataAsnWrite()
+* ID2SReplyGetChunkAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2SChunkDataAsnWrite(ID2SChunkDataPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2SReplyGetChunkAsnWrite(ID2SReplyGetChunkPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -7251,7 +4611,7 @@ ID2SChunkDataAsnWrite(ID2SChunkDataPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
return FALSE;
}
- atp = AsnLinkType(orig, ID2S_CHUNK_DATA); /* link local tree */
+ atp = AsnLinkType(orig, ID2S_REPLY_GET_CHUNK); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -7261,16 +4621,18 @@ ID2SChunkDataAsnWrite(ID2SChunkDataPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
goto erret;
}
- if (ptr -> Id_id != NULL) {
- if ( ! Id_idAsnWrite(ptr -> Id_id, aip, ID2S_CHUNK_DATA_id)) {
+ if (ptr -> blob_id != NULL) {
+ if ( ! ID2BlobIdAsnWrite(ptr -> blob_id, aip, ID2S_REPLY_GET_CHUNK_blob_id)) {
+ goto erret;
+ }
+ }
+ av.intvalue = ptr -> chunk_id;
+ retval = AsnWrite(aip, ID2S_REPLY_GET_CHUNK_chunk_id, &av);
+ if (ptr -> data != NULL) {
+ if ( ! ID2ReplyDataAsnWrite(ptr -> data, aip, ID2S_REPLY_GET_CHUNK_data)) {
goto erret;
}
}
- AsnGenericChoiceSeqOfAsnWrite(ptr -> descrs, (AsnWriteFunc) SeqDescrAsnWrite, aip, ID2S_CHUNK_DATA_descrs, ID2S_CHUNK_DATA_descrs_E);
- AsnGenericUserSeqOfAsnWrite(ptr -> annots, (AsnWriteFunc) SeqAnnotAsnWrite, aip, ID2S_CHUNK_DATA_annots, ID2S_CHUNK_DATA_annots_E);
- AsnGenericUserSeqOfAsnWrite(ptr -> assembly, (AsnWriteFunc) SeqAlignAsnWrite, aip, ID2S_CHUNK_DATA_assembly, ID2S_CHUNK_DATA_assembly_E);
- AsnGenericUserSeqOfAsnWrite(ptr -> seq_map, (AsnWriteFunc) SeqLiteralAsnWrite, aip, ID2S_CHUNK_DATA_seq_map, ID2S_CHUNK_DATA_seq_map_E);
- AsnGenericUserSeqOfAsnWrite(ptr -> seq_data, (AsnWriteFunc) SeqLiteralAsnWrite, aip, ID2S_CHUNK_DATA_seq_data, ID2S_CHUNK_DATA_seq_data_E);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -7285,78 +4647,18 @@ erret:
/**************************************************
*
-* Id_idAsnWrite()
-*
-**************************************************/
-static Boolean LIBCALL
-Id_idAsnWrite(Id_idPtr anp, AsnIoPtr aip, AsnTypePtr orig)
-
-{
- DataVal av;
- AsnTypePtr atp, writetype = NULL;
- Pointer pnt;
- AsnWriteFunc func = NULL;
- Boolean retval = FALSE;
-
- if (! loaded)
- {
- if (! id2genAsnLoad())
- return FALSE;
- }
-
- if (aip == NULL)
- return FALSE;
-
- atp = AsnLinkType(orig, ID2S_CHUNK_DATA_id); /* link local tree */
- if (atp == NULL) {
- return FALSE;
- }
-
- if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
-
- av.ptrvalue = (Pointer)anp;
- if (! AsnWriteChoice(aip, atp, (Int2)anp->choice, &av)) {
- goto erret;
- }
-
- pnt = anp->data.ptrvalue;
- switch (anp->choice)
- {
- case Id_id_bioseq_set:
- av.intvalue = anp->data.intvalue;
- retval = AsnWrite(aip, ID2S_CHUNK_DATA_id_bioseq_set, &av);
- break;
- case Id_id_gi:
- av.intvalue = anp->data.intvalue;
- retval = AsnWrite(aip, ID2S_CHUNK_DATA_id_gi, &av);
- break;
- }
- if (writetype != NULL) {
- retval = (* func)(pnt, aip, writetype); /* write it out */
- }
- if (!retval) {
- goto erret;
- }
- retval = TRUE;
-
-erret:
- AsnUnlinkType(orig); /* unlink local tree */
- return retval;
-}
-
-
-/**************************************************
-*
-* ID2IntervalNew()
+* ID2ReplyDataNew()
*
**************************************************/
NLM_EXTERN
-ID2IntervalPtr LIBCALL
-ID2IntervalNew(void)
+ID2ReplyDataPtr LIBCALL
+ID2ReplyDataNew(void)
{
- ID2IntervalPtr ptr = MemNew((size_t) sizeof(ID2Interval));
+ ID2ReplyDataPtr ptr = MemNew((size_t) sizeof(ID2ReplyData));
- ptr -> length = 1;
+ ptr -> data_type = 0;
+ ptr -> data_format = 0;
+ ptr -> data_compression = 0;
return ptr;
}
@@ -7364,35 +4666,36 @@ ID2IntervalNew(void)
/**************************************************
*
-* ID2IntervalFree()
+* ID2ReplyDataFree()
*
**************************************************/
NLM_EXTERN
-ID2IntervalPtr LIBCALL
-ID2IntervalFree(ID2IntervalPtr ptr)
+ID2ReplyDataPtr LIBCALL
+ID2ReplyDataFree(ID2ReplyDataPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
+ AsnGenericBaseSeqOfFree(ptr -> data ,ASNCODE_BYTEVAL_SLOT);
return MemFree(ptr);
}
/**************************************************
*
-* ID2IntervalAsnRead()
+* ID2ReplyDataAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2IntervalPtr LIBCALL
-ID2IntervalAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyDataPtr LIBCALL
+ID2ReplyDataAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2IntervalPtr ptr;
+ ID2ReplyDataPtr ptr;
if (! loaded)
{
@@ -7405,17 +4708,17 @@ ID2IntervalAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2Interval ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_INTERVAL);
+ if (orig == NULL) { /* ID2ReplyData ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_REPLY_DATA);
} else {
- atp = AsnLinkType(orig, ID2_INTERVAL);
+ atp = AsnLinkType(orig, ID2_REPLY_DATA);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2IntervalNew();
+ ptr = ID2ReplyDataNew();
if (ptr == NULL) {
goto erret;
}
@@ -7426,25 +4729,32 @@ ID2IntervalAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2_INTERVAL_gi) {
+ if (atp == ID2_REPLY_DATA_data_type) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> gi = av.intvalue;
+ ptr -> data_type = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2_INTERVAL_start) {
+ if (atp == ID2_REPLY_DATA_data_format) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> start = av.intvalue;
+ ptr -> data_format = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2_INTERVAL_length) {
+ if (atp == ID2_REPLY_DATA_data_compression) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> length = av.intvalue;
+ ptr -> data_compression = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2_REPLY_DATA_data) {
+ ptr -> data = AsnGenericBaseSeqOfAsnRead(aip, amp, atp, ASNCODE_BYTEVAL_SLOT, &isError);
+ if (isError && ptr -> data == NULL) {
+ goto erret;
+ }
atp = AsnReadId(aip,amp, atp);
}
@@ -7459,7 +4769,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2IntervalFree(ptr);
+ ptr = ID2ReplyDataFree(ptr);
goto ret;
}
@@ -7467,11 +4777,11 @@ erret:
/**************************************************
*
-* ID2IntervalAsnWrite()
+* ID2ReplyDataAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2IntervalAsnWrite(ID2IntervalPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2ReplyDataAsnWrite(ID2ReplyDataPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -7488,7 +4798,7 @@ ID2IntervalAsnWrite(ID2IntervalPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
return FALSE;
}
- atp = AsnLinkType(orig, ID2_INTERVAL); /* link local tree */
+ atp = AsnLinkType(orig, ID2_REPLY_DATA); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -7498,12 +4808,13 @@ ID2IntervalAsnWrite(ID2IntervalPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
goto erret;
}
- av.intvalue = ptr -> gi;
- retval = AsnWrite(aip, ID2_INTERVAL_gi, &av);
- av.intvalue = ptr -> start;
- retval = AsnWrite(aip, ID2_INTERVAL_start, &av);
- av.intvalue = ptr -> length;
- retval = AsnWrite(aip, ID2_INTERVAL_length, &av);
+ av.intvalue = ptr -> data_type;
+ retval = AsnWrite(aip, ID2_REPLY_DATA_data_type, &av);
+ av.intvalue = ptr -> data_format;
+ retval = AsnWrite(aip, ID2_REPLY_DATA_data_format, &av);
+ av.intvalue = ptr -> data_compression;
+ retval = AsnWrite(aip, ID2_REPLY_DATA_data_compression, &av);
+ retval = AsnGenericBaseSeqOfAsnWrite(ptr -> data ,ASNCODE_BYTEVAL_SLOT, aip, ID2_REPLY_DATA_data, ID2_REPLY_DATA_data_E);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
@@ -7518,52 +4829,36 @@ erret:
/**************************************************
*
-* ID2PackedSeqIntsNew()
-*
-**************************************************/
-NLM_EXTERN
-ID2PackedSeqIntsPtr LIBCALL
-ID2PackedSeqIntsNew(void)
-{
- ID2PackedSeqIntsPtr ptr = MemNew((size_t) sizeof(ID2PackedSeqInts));
-
- return ptr;
-
-}
-
-
-/**************************************************
-*
-* ID2PackedSeqIntsFree()
+* ID2BlobSeqIdsFree()
*
**************************************************/
NLM_EXTERN
-ID2PackedSeqIntsPtr LIBCALL
-ID2PackedSeqIntsFree(ID2PackedSeqIntsPtr ptr)
+ID2BlobSeqIdsPtr LIBCALL
+ID2BlobSeqIdsFree(ID2BlobSeqIdsPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
- AsnGenericUserSeqOfFree(ptr -> ints, (AsnOptFreeFunc) ID2SeqRangeFree);
- return MemFree(ptr);
+ AsnGenericUserSeqOfFree(ptr, (AsnOptFreeFunc) ID2BlobSeqIdFree);
+ return NULL;
}
/**************************************************
*
-* ID2PackedSeqIntsAsnRead()
+* ID2BlobSeqIdsAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2PackedSeqIntsPtr LIBCALL
-ID2PackedSeqIntsAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2BlobSeqIdsPtr LIBCALL
+ID2BlobSeqIdsAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2PackedSeqIntsPtr ptr;
+ ID2BlobSeqIdsPtr ptr;
if (! loaded)
{
@@ -7576,46 +4871,24 @@ ID2PackedSeqIntsAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2PackedSeqInts ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_PACKED_SEQ_INTS);
+ if (orig == NULL) { /* ID2BlobSeqIds ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_BLOB_SEQ_IDS);
} else {
- atp = AsnLinkType(orig, ID2_PACKED_SEQ_INTS);
+ atp = AsnLinkType(orig, ID2_BLOB_SEQ_IDS);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2PackedSeqIntsNew();
- if (ptr == NULL) {
- goto erret;
- }
- if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
- goto erret;
- }
-
- atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2_PACKED_SEQ_INTS_gi) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
- goto erret;
- }
- ptr -> gi = av.intvalue;
- atp = AsnReadId(aip,amp, atp);
- }
- if (atp == ID2_PACKED_SEQ_INTS_ints) {
- ptr -> ints = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SeqRangeAsnRead, (AsnOptFreeFunc) ID2SeqRangeFree);
- if (isError && ptr -> ints == NULL) {
- goto erret;
- }
- atp = AsnReadId(aip,amp, atp);
- }
-
- if (AsnReadVal(aip, atp, &av) <= 0) {
+ ptr = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2BlobSeqIdAsnRead, (AsnOptFreeFunc) ID2BlobSeqIdFree);
+ if (isError && ptr == NULL) {
goto erret;
}
- /* end struct */
+
+
ret:
AsnUnlinkType(orig); /* unlink local tree */
@@ -7623,7 +4896,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2PackedSeqIntsFree(ptr);
+ ptr = ID2BlobSeqIdsFree(ptr);
goto ret;
}
@@ -7631,11 +4904,11 @@ erret:
/**************************************************
*
-* ID2PackedSeqIntsAsnWrite()
+* ID2BlobSeqIdsAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2PackedSeqIntsAsnWrite(ID2PackedSeqIntsPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2BlobSeqIdsAsnWrite(ID2BlobSeqIdsPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -7652,22 +4925,13 @@ ID2PackedSeqIntsAsnWrite(ID2PackedSeqIntsPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
return FALSE;
}
- atp = AsnLinkType(orig, ID2_PACKED_SEQ_INTS); /* link local tree */
+ atp = AsnLinkType(orig, ID2_BLOB_SEQ_IDS); /* link local tree */
if (atp == NULL) {
return FALSE;
}
if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
- if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
- goto erret;
- }
-
- av.intvalue = ptr -> gi;
- retval = AsnWrite(aip, ID2_PACKED_SEQ_INTS_gi, &av);
- AsnGenericUserSeqOfAsnWrite(ptr -> ints, (AsnWriteFunc) ID2SeqRangeAsnWrite, aip, ID2_PACKED_SEQ_INTS_ints, ID2_PACKED_SEQ_INTS_ints_E);
- if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
- goto erret;
- }
+ retval = AsnGenericUserSeqOfAsnWrite(ptr , (AsnWriteFunc) ID2BlobSeqIdAsnWrite, aip, atp, ID2_BLOB_SEQ_IDS_E);
retval = TRUE;
erret:
@@ -7679,16 +4943,15 @@ erret:
/**************************************************
*
-* ID2SeqRangeNew()
+* ID2BlobSeqIdNew()
*
**************************************************/
NLM_EXTERN
-ID2SeqRangePtr LIBCALL
-ID2SeqRangeNew(void)
+ID2BlobSeqIdPtr LIBCALL
+ID2BlobSeqIdNew(void)
{
- ID2SeqRangePtr ptr = MemNew((size_t) sizeof(ID2SeqRange));
+ ID2BlobSeqIdPtr ptr = MemNew((size_t) sizeof(ID2BlobSeqId));
- ptr -> length = 1;
return ptr;
}
@@ -7696,35 +4959,36 @@ ID2SeqRangeNew(void)
/**************************************************
*
-* ID2SeqRangeFree()
+* ID2BlobSeqIdFree()
*
**************************************************/
NLM_EXTERN
-ID2SeqRangePtr LIBCALL
-ID2SeqRangeFree(ID2SeqRangePtr ptr)
+ID2BlobSeqIdPtr LIBCALL
+ID2BlobSeqIdFree(ID2BlobSeqIdPtr ptr)
{
if(ptr == NULL) {
return NULL;
}
+ SeqIdFree(ptr -> seq_id);
return MemFree(ptr);
}
/**************************************************
*
-* ID2SeqRangeAsnRead()
+* ID2BlobSeqIdAsnRead()
*
**************************************************/
NLM_EXTERN
-ID2SeqRangePtr LIBCALL
-ID2SeqRangeAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+ID2BlobSeqIdPtr LIBCALL
+ID2BlobSeqIdAsnRead(AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
Boolean isError = FALSE;
AsnReadFunc func;
- ID2SeqRangePtr ptr;
+ ID2BlobSeqIdPtr ptr;
if (! loaded)
{
@@ -7737,17 +5001,17 @@ ID2SeqRangeAsnRead(AsnIoPtr aip, AsnTypePtr orig)
return NULL;
}
- if (orig == NULL) { /* ID2SeqRange ::= (self contained) */
- atp = AsnReadId(aip, amp, ID2_SEQ_RANGE);
+ if (orig == NULL) { /* ID2BlobSeqId ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_BLOB_SEQ_ID);
} else {
- atp = AsnLinkType(orig, ID2_SEQ_RANGE);
+ atp = AsnLinkType(orig, ID2_BLOB_SEQ_ID);
}
/* link in local tree */
if (atp == NULL) {
return NULL;
}
- ptr = ID2SeqRangeNew();
+ ptr = ID2BlobSeqIdNew();
if (ptr == NULL) {
goto erret;
}
@@ -7758,18 +5022,18 @@ ID2SeqRangeAsnRead(AsnIoPtr aip, AsnTypePtr orig)
atp = AsnReadId(aip,amp, atp);
func = NULL;
- if (atp == ID2_SEQ_RANGE_start) {
- if ( AsnReadVal(aip, atp, &av) <= 0) {
+ if (atp == ID2_BLOB_SEQ_ID_seq_id) {
+ ptr -> seq_id = SeqIdAsnRead(aip, atp);
+ if (aip -> io_failure) {
goto erret;
}
- ptr -> start = av.intvalue;
atp = AsnReadId(aip,amp, atp);
}
- if (atp == ID2_SEQ_RANGE_length) {
+ if (atp == ID2_BLOB_SEQ_ID_replaced) {
if ( AsnReadVal(aip, atp, &av) <= 0) {
goto erret;
}
- ptr -> length = av.intvalue;
+ ptr -> replaced = av.boolvalue;
atp = AsnReadId(aip,amp, atp);
}
@@ -7784,7 +5048,7 @@ ret:
erret:
aip -> io_failure = TRUE;
- ptr = ID2SeqRangeFree(ptr);
+ ptr = ID2BlobSeqIdFree(ptr);
goto ret;
}
@@ -7792,11 +5056,11 @@ erret:
/**************************************************
*
-* ID2SeqRangeAsnWrite()
+* ID2BlobSeqIdAsnWrite()
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
-ID2SeqRangeAsnWrite(ID2SeqRangePtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+ID2BlobSeqIdAsnWrite(ID2BlobSeqIdPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
{
DataVal av;
AsnTypePtr atp;
@@ -7813,7 +5077,7 @@ ID2SeqRangeAsnWrite(ID2SeqRangePtr ptr, AsnIoPtr aip, AsnTypePtr orig)
return FALSE;
}
- atp = AsnLinkType(orig, ID2_SEQ_RANGE); /* link local tree */
+ atp = AsnLinkType(orig, ID2_BLOB_SEQ_ID); /* link local tree */
if (atp == NULL) {
return FALSE;
}
@@ -7823,10 +5087,13 @@ ID2SeqRangeAsnWrite(ID2SeqRangePtr ptr, AsnIoPtr aip, AsnTypePtr orig)
goto erret;
}
- av.intvalue = ptr -> start;
- retval = AsnWrite(aip, ID2_SEQ_RANGE_start, &av);
- av.intvalue = ptr -> length;
- retval = AsnWrite(aip, ID2_SEQ_RANGE_length, &av);
+ if (ptr -> seq_id != NULL) {
+ if ( ! SeqIdAsnWrite(ptr -> seq_id, aip, ID2_BLOB_SEQ_ID_seq_id)) {
+ goto erret;
+ }
+ }
+ av.boolvalue = ptr -> replaced;
+ retval = AsnWrite(aip, ID2_BLOB_SEQ_ID_replaced, &av);
if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
goto erret;
}
diff --git a/network/id2arch/id2.h b/network/id2arch/id2.h
index affa3533..874c3e2c 100644
--- a/network/id2arch/id2.h
+++ b/network/id2arch/id2.h
@@ -9,257 +9,203 @@
#include <asn.h>
#endif
-static char * asnfilename = "id2.h14";
-static AsnValxNode avnx[27] = {
+static char * asnfilename = "id2.h10";
+static AsnValxNode avnx[48] = {
{20,"set-value" ,1,0.0,&avnx[1] } ,
{20,"get-value" ,2,0.0,&avnx[2] } ,
{20,"force-value" ,3,0.0,&avnx[3] } ,
{20,"use-package" ,4,0.0,NULL } ,
{3,NULL,1,0.0,NULL } ,
- {3,NULL,1,0.0,NULL } ,
- {3,NULL,1,0.0,NULL } ,
- {3,NULL,1,0.0,NULL } ,
+ {20,"any" ,0,0.0,&avnx[6] } ,
+ {20,"gi" ,1,0.0,&avnx[7] } ,
+ {20,"text" ,2,0.0,&avnx[8] } ,
+ {20,"general" ,4,0.0,&avnx[9] } ,
+ {20,"all" ,127,0.0,NULL } ,
+ {3,NULL,0,0.0,NULL } ,
+ {20,"main" ,0,0.0,&avnx[12] } ,
+ {20,"snp" ,1,0.0,&avnx[13] } ,
+ {20,"mgc" ,16,0.0,NULL } ,
+ {3,NULL,0,0.0,NULL } ,
{3,NULL,1,0.0,NULL } ,
{3,NULL,1,0.0,NULL } ,
{3,NULL,0,0.0,NULL } ,
{3,NULL,0,0.0,NULL } ,
{3,NULL,0,0.0,NULL } ,
- {20,"none" ,0,0.0,&avnx[14] } ,
- {20,"seq-map" ,1,0.0,&avnx[15] } ,
+ {20,"none" ,0,0.0,&avnx[21] } ,
+ {20,"seq-map" ,1,0.0,&avnx[22] } ,
{20,"seq-data" ,2,0.0,NULL } ,
{3,NULL,0,0.0,NULL } ,
- {1,"" ,0,0.0,NULL } ,
+ {20,"warning" ,1,0.0,&avnx[25] } ,
+ {20,"failed-command" ,2,0.0,&avnx[26] } ,
+ {20,"failed-connection" ,3,0.0,&avnx[27] } ,
+ {20,"failed-server" ,4,0.0,&avnx[28] } ,
+ {20,"no-data" ,5,0.0,&avnx[29] } ,
+ {20,"restricted-data" ,6,0.0,&avnx[30] } ,
+ {20,"unsupported-command" ,7,0.0,&avnx[31] } ,
+ {20,"invalid-arguments" ,8,0.0,NULL } ,
+ {3,NULL,0,0.0,NULL } ,
+ {20,"seq-entry" ,0,0.0,&avnx[34] } ,
+ {20,"seq-annot" ,1,0.0,&avnx[35] } ,
+ {20,"id2s-split-info" ,2,0.0,&avnx[36] } ,
+ {20,"id2s-chunk" ,3,0.0,NULL } ,
{3,NULL,0,0.0,NULL } ,
- {20,"warning" ,1,0.0,&avnx[20] } ,
- {20,"failed-command" ,2,0.0,&avnx[21] } ,
- {20,"failed-connection" ,3,0.0,&avnx[22] } ,
- {20,"failed-server" ,4,0.0,&avnx[23] } ,
- {20,"no-data" ,5,0.0,&avnx[24] } ,
- {20,"restricted-data" ,6,0.0,&avnx[25] } ,
- {20,"unsupported-command" ,7,0.0,&avnx[26] } ,
- {20,"invalid-arguments" ,8,0.0,NULL } };
-
-static AsnType atx[217] = {
+ {20,"asn-binary" ,0,0.0,&avnx[39] } ,
+ {20,"asn-text" ,1,0.0,&avnx[40] } ,
+ {20,"xml" ,2,0.0,NULL } ,
+ {3,NULL,0,0.0,NULL } ,
+ {20,"none" ,0,0.0,&avnx[43] } ,
+ {20,"gzip" ,1,0.0,&avnx[44] } ,
+ {20,"nlmzip" ,2,0.0,&avnx[45] } ,
+ {20,"bzip2" ,3,0.0,NULL } ,
+ {3,NULL,0,0.0,NULL } ,
+ {3,NULL,0,0.0,NULL } };
+
+static AsnType atx[142] = {
{401, "Seq-id" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[1]} ,
- {402, "Seq-annot" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[2]} ,
- {403, "Seq-descr" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[3]} ,
- {404, "Seq-literal" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[4]} ,
- {405, "Seq-align" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[5]} ,
- {406, "ID2-Request-Packet" ,1,0,0,0,0,0,0,0,NULL,&atx[18],&atx[6],0,&atx[7]} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[7],NULL,0,NULL} ,
- {407, "ID2-Request" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[8],0,&atx[11]} ,
- {0, "serial-number" ,128,0,0,1,0,0,0,0,NULL,&atx[9],NULL,0,&atx[10]} ,
+ {402, "Seq-loc" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[2]} ,
+ {403, "ID2S-Chunk-Id" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[3]} ,
+ {404, "ID2S-Seq-annot-Info" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[4]} ,
+ {405, "ID2-Request-Packet" ,1,0,0,0,0,0,0,0,NULL,&atx[17],&atx[5],0,&atx[6]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[6],NULL,0,NULL} ,
+ {406, "ID2-Request" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[7],0,&atx[10]} ,
+ {0, "serial-number" ,128,0,0,1,0,0,0,0,NULL,&atx[8],NULL,0,&atx[9]} ,
{302, "INTEGER" ,0,2,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
- {0, "params" ,128,1,0,1,0,0,0,0,NULL,&atx[11],NULL,0,&atx[22]} ,
- {408, "ID2-Params" ,1,0,0,0,0,0,0,0,NULL,&atx[18],&atx[12],0,&atx[26]} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[13],NULL,0,NULL} ,
- {448, "ID2-Param" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[14],0,NULL} ,
- {0, "name" ,128,0,0,0,0,0,0,0,NULL,&atx[15],NULL,0,&atx[16]} ,
+ {0, "params" ,128,1,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[21]} ,
+ {407, "ID2-Params" ,1,0,0,0,0,0,0,0,NULL,&atx[17],&atx[11],0,&atx[25]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[12],NULL,0,NULL} ,
+ {430, "ID2-Param" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[13],0,NULL} ,
+ {0, "name" ,128,0,0,0,0,0,0,0,NULL,&atx[14],NULL,0,&atx[15]} ,
{323, "VisibleString" ,0,26,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
- {0, "value" ,128,1,0,1,0,0,0,0,NULL,&atx[18],&atx[17],0,&atx[19]} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[15],NULL,0,NULL} ,
+ {0, "value" ,128,1,0,1,0,0,0,0,NULL,&atx[17],&atx[16],0,&atx[18]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[14],NULL,0,NULL} ,
{312, "SEQUENCE OF" ,0,16,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
- {0, "type" ,128,2,0,0,1,0,0,0,&avnx[4],&atx[20],&avnx[0],0,NULL} ,
+ {0, "type" ,128,2,0,0,1,0,0,0,&avnx[4],&atx[19],&avnx[0],0,NULL} ,
{310, "ENUMERATED" ,0,10,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
{311, "SEQUENCE" ,0,16,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
- {0, "request" ,128,2,0,0,0,0,0,0,NULL,&atx[42],&atx[23],0,NULL} ,
- {0, "init" ,128,0,0,0,0,0,0,0,NULL,&atx[24],NULL,0,&atx[25]} ,
+ {0, "request" ,128,2,0,0,0,0,0,0,NULL,&atx[35],&atx[22],0,NULL} ,
+ {0, "init" ,128,0,0,0,0,0,0,0,NULL,&atx[23],NULL,0,&atx[24]} ,
{305, "NULL" ,0,5,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
- {0, "get-packages" ,128,1,0,0,0,0,0,0,NULL,&atx[26],NULL,0,&atx[30]} ,
- {409, "ID2-Request-Get-Packages" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[27],0,&atx[31]} ,
- {0, "names" ,128,0,0,1,0,0,0,0,NULL,&atx[18],&atx[28],0,&atx[29]} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[15],NULL,0,NULL} ,
- {0, "no-contents" ,128,1,0,1,0,0,0,0,NULL,&atx[24],NULL,0,NULL} ,
- {0, "string-to-gi" ,128,2,0,0,0,0,0,0,NULL,&atx[31],NULL,0,&atx[33]} ,
- {410, "ID2-Request-String-To-Gi" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[32],0,&atx[34]} ,
- {0, "id" ,128,0,0,0,0,0,0,0,NULL,&atx[15],NULL,0,NULL} ,
- {0, "seq-id-to-gi" ,128,3,0,0,0,0,0,0,NULL,&atx[34],NULL,0,&atx[36]} ,
- {411, "ID2-Request-Seq-id-To-Gi" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[35],0,&atx[37]} ,
- {0, "seq-id" ,128,0,0,0,0,0,0,0,NULL,&atx[0],NULL,0,NULL} ,
- {0, "gi-to-tse-id" ,128,4,0,0,0,0,0,0,NULL,&atx[37],NULL,0,&atx[48]} ,
- {412, "ID2-Request-Gi-To-TSE-Id" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[38],0,&atx[49]} ,
- {0, "gi" ,128,0,0,0,0,0,0,0,NULL,&atx[42],&atx[39],0,&atx[43]} ,
- {0, "gi" ,128,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[40]} ,
- {0, "string" ,128,1,0,0,0,0,0,0,NULL,&atx[31],NULL,0,&atx[41]} ,
- {0, "seq-id" ,128,2,0,0,0,0,0,0,NULL,&atx[34],NULL,0,NULL} ,
+ {0, "get-packages" ,128,1,0,0,0,0,0,0,NULL,&atx[25],NULL,0,&atx[29]} ,
+ {408, "ID2-Request-Get-Packages" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[26],0,&atx[30]} ,
+ {0, "names" ,128,0,0,1,0,0,0,0,NULL,&atx[17],&atx[27],0,&atx[28]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[14],NULL,0,NULL} ,
+ {0, "no-contents" ,128,1,0,1,0,0,0,0,NULL,&atx[23],NULL,0,NULL} ,
+ {0, "get-seq-id" ,128,2,0,0,0,0,0,0,NULL,&atx[30],NULL,0,&atx[37]} ,
+ {409, "ID2-Request-Get-Seq-id" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[31],0,&atx[38]} ,
+ {0, "seq-id" ,128,0,0,0,0,0,0,0,NULL,&atx[32],NULL,0,&atx[36]} ,
+ {414, "ID2-Seq-id" ,1,0,0,0,0,0,0,0,NULL,&atx[35],&atx[33],0,&atx[47]} ,
+ {0, "string" ,128,0,0,0,0,0,0,0,NULL,&atx[14],NULL,0,&atx[34]} ,
+ {0, "seq-id" ,128,1,0,0,0,0,0,0,NULL,&atx[0],NULL,0,NULL} ,
{315, "CHOICE" ,0,-1,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
- {0, "sources" ,128,1,0,1,0,0,0,0,NULL,&atx[45],&atx[44],0,&atx[46]} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[15],NULL,0,NULL} ,
- {314, "SET OF" ,0,17,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
- {0, "external" ,128,2,0,1,0,0,0,0,NULL,&atx[24],NULL,0,&atx[47]} ,
- {0, "current-gis" ,128,3,0,1,0,0,0,0,NULL,&atx[24],NULL,0,NULL} ,
- {0, "get-tse" ,128,5,0,0,0,0,0,0,NULL,&atx[49],NULL,0,&atx[89]} ,
- {413, "ID2-Request-Get-TSE" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[50],0,&atx[90]} ,
- {0, "tse-id" ,128,0,0,0,0,0,0,0,NULL,&atx[42],&atx[51],0,&atx[59]} ,
- {0, "tse-id" ,128,0,0,0,0,0,0,0,NULL,&atx[52],NULL,0,&atx[55]} ,
- {416, "ID2-TSE-Id" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[53],0,&atx[60]} ,
- {0, "sat" ,128,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[54]} ,
- {0, "sat-key" ,128,1,0,0,0,0,0,0,NULL,&atx[9],NULL,0,NULL} ,
- {0, "gi" ,128,1,0,0,0,0,0,0,NULL,&atx[21],&atx[56],0,NULL} ,
- {0, "request" ,128,0,0,0,0,0,0,0,NULL,&atx[37],NULL,0,&atx[57]} ,
- {0, "exclude-tses" ,128,1,0,1,0,0,0,0,NULL,&atx[45],&atx[58],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[52],NULL,0,NULL} ,
- {0, "details" ,128,1,0,1,0,0,0,0,NULL,&atx[60],NULL,0,NULL} ,
- {417, "ID2-Get-TSE-Details" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[61],0,&atx[99]} ,
- {0, "location" ,128,0,0,0,0,0,0,0,NULL,&atx[62],NULL,0,&atx[83]} ,
- {419, "ID2-Seq-loc" ,1,0,0,0,0,0,0,0,NULL,&atx[42],&atx[63],0,&atx[100]} ,
- {0, "whole" ,128,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[64]} ,
- {0, "int" ,128,1,0,0,0,0,0,0,NULL,&atx[65],NULL,0,&atx[69]} ,
- {445, "ID2-Interval" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[66],0,&atx[70]} ,
- {0, "gi" ,128,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[67]} ,
- {0, "start" ,128,1,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[68]} ,
- {0, "length" ,128,2,0,0,1,0,0,0,&avnx[5],&atx[9],NULL,0,NULL} ,
- {0, "int-set" ,128,2,0,0,0,0,0,0,NULL,&atx[70],NULL,0,&atx[77]} ,
- {446, "ID2-Packed-Seq-ints" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[71],0,&atx[74]} ,
- {0, "gi" ,128,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[72]} ,
- {0, "ints" ,128,1,0,0,0,0,0,0,NULL,&atx[45],&atx[73],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[74],NULL,0,NULL} ,
- {447, "ID2-Seq-range" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[75],0,&atx[13]} ,
- {0, "start" ,128,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[76]} ,
- {0, "length" ,128,1,0,0,1,0,0,0,&avnx[6],&atx[9],NULL,0,NULL} ,
- {0, "whole-range" ,128,3,0,0,0,0,0,0,NULL,&atx[78],NULL,0,&atx[81]} ,
- {434, "ID2-Id-Range" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[79],0,&atx[160]} ,
- {0, "start" ,128,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[80]} ,
- {0, "count" ,128,1,0,0,1,0,0,0,&avnx[7],&atx[9],NULL,0,NULL} ,
- {0, "loc-set" ,128,4,0,0,0,0,0,0,NULL,&atx[45],&atx[82],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[62],NULL,0,NULL} ,
- {0, "seq-class-level" ,128,1,0,0,1,0,0,0,&avnx[8],&atx[9],NULL,0,&atx[84]} ,
- {0, "descr-level" ,128,2,0,0,1,0,0,0,&avnx[9],&atx[9],NULL,0,&atx[85]} ,
- {0, "descr-type-mask" ,128,3,0,0,1,0,0,0,&avnx[10],&atx[9],NULL,0,&atx[86]} ,
- {0, "annot-type-mask" ,128,4,0,0,1,0,0,0,&avnx[11],&atx[9],NULL,0,&atx[87]} ,
- {0, "feat-type-mask" ,128,5,0,0,1,0,0,0,&avnx[12],&atx[9],NULL,0,&atx[88]} ,
- {0, "sequence-level" ,128,6,0,0,1,0,0,0,&avnx[16],&atx[20],&avnx[13],0,NULL} ,
- {0, "reget-tse" ,128,6,0,0,0,0,0,0,NULL,&atx[90],NULL,0,&atx[94]} ,
- {414, "ID2-Request-ReGet-TSE" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[91],0,&atx[95]} ,
- {0, "tse-id" ,128,0,0,0,0,0,0,0,NULL,&atx[52],NULL,0,&atx[92]} ,
- {0, "details" ,128,1,0,1,0,0,0,0,NULL,&atx[60],NULL,0,&atx[93]} ,
- {0, "offset" ,128,2,0,0,0,0,0,0,NULL,&atx[9],NULL,0,NULL} ,
- {0, "get-chunks" ,128,7,0,0,0,0,0,0,NULL,&atx[95],NULL,0,NULL} ,
- {415, "ID2S-Request-Get-Chunks" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[96],0,&atx[52]} ,
- {0, "tse-id" ,128,0,0,0,0,0,0,0,NULL,&atx[52],NULL,0,&atx[97]} ,
- {0, "chunks" ,128,1,0,0,0,0,0,0,NULL,&atx[45],&atx[98],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[99],NULL,0,NULL} ,
- {418, "ID2S-Chunk-Id" ,1,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[62]} ,
- {420, "ID2-Reply" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[101],0,&atx[106]} ,
- {0, "serial-number" ,128,0,0,1,0,0,0,0,NULL,&atx[9],NULL,0,&atx[102]} ,
- {0, "params" ,128,1,0,1,0,0,0,0,NULL,&atx[11],NULL,0,&atx[103]} ,
- {0, "reply" ,128,2,0,0,0,0,0,0,NULL,&atx[42],&atx[104],0,&atx[143]} ,
- {0, "init" ,128,0,0,0,0,0,0,0,NULL,&atx[24],NULL,0,&atx[105]} ,
- {0, "get-package" ,128,1,0,0,0,0,0,0,NULL,&atx[106],NULL,0,&atx[109]} ,
- {421, "ID2-Reply-Get-Package" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[107],0,&atx[110]} ,
- {0, "name" ,128,0,0,0,0,0,0,0,NULL,&atx[15],NULL,0,&atx[108]} ,
- {0, "params" ,128,1,0,1,0,0,0,0,NULL,&atx[11],NULL,0,NULL} ,
- {0, "seq-id-to-gi" ,128,2,0,0,0,0,0,0,NULL,&atx[110],NULL,0,&atx[113]} ,
- {422, "ID2-Reply-Seq-id-To-Gi" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[111],0,&atx[114]} ,
- {0, "seq-id" ,128,0,0,0,0,0,0,0,NULL,&atx[0],NULL,0,&atx[112]} ,
- {0, "gi" ,128,1,0,1,0,0,0,0,NULL,&atx[9],NULL,0,NULL} ,
- {0, "gi-to-tse-id" ,128,3,0,0,0,0,0,0,NULL,&atx[114],NULL,0,&atx[122]} ,
- {423, "ID2-Reply-Gi-To-TSE-Id" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[115],0,&atx[123]} ,
- {0, "gi" ,128,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[116]} ,
- {0, "source" ,128,1,0,0,1,0,0,0,&avnx[17],&atx[15],NULL,0,&atx[117]} ,
- {0, "tses" ,128,2,0,1,0,0,0,0,NULL,&atx[45],&atx[118],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[119],NULL,0,NULL} ,
- {428, "ID2-TSE-Id-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[120],0,&atx[126]} ,
- {0, "tse-id" ,128,0,0,0,0,0,0,0,NULL,&atx[52],NULL,0,&atx[121]} ,
- {0, "split-version" ,128,1,0,0,1,0,0,0,&avnx[18],&atx[9],NULL,0,NULL} ,
- {0, "get-tse" ,128,4,0,0,0,0,0,0,NULL,&atx[123],NULL,0,&atx[133]} ,
- {424, "ID2-Reply-Get-TSE" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[124],0,&atx[134]} ,
- {0, "tse-id" ,128,0,0,0,0,0,0,0,NULL,&atx[52],NULL,0,&atx[125]} ,
- {0, "data" ,128,1,0,1,0,0,0,0,NULL,&atx[126],NULL,0,NULL} ,
- {429, "ID2-Reply-Data" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[127],0,&atx[151]} ,
- {0, "data-type" ,128,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[128]} ,
- {0, "data-format" ,128,1,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[129]} ,
- {0, "data-compression" ,128,2,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[130]} ,
- {0, "data" ,128,3,0,0,0,0,0,0,NULL,&atx[18],&atx[131],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[132],NULL,0,NULL} ,
- {304, "OCTET STRING" ,0,4,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
- {0, "get-tse-info" ,128,5,0,0,0,0,0,0,NULL,&atx[134],NULL,0,&atx[138]} ,
- {425, "ID2S-Reply-Get-TSE-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[135],0,&atx[139]} ,
- {0, "tse-id" ,128,0,0,0,0,0,0,0,NULL,&atx[52],NULL,0,&atx[136]} ,
- {0, "split-version" ,128,1,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[137]} ,
- {0, "info" ,128,2,0,1,0,0,0,0,NULL,&atx[126],NULL,0,NULL} ,
- {0, "get-chunk" ,128,6,0,0,0,0,0,0,NULL,&atx[139],NULL,0,NULL} ,
- {426, "ID2S-Reply-Get-Chunk" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[140],0,&atx[145]} ,
- {0, "tse-id" ,128,0,0,0,0,0,0,0,NULL,&atx[52],NULL,0,&atx[141]} ,
- {0, "chunk-id" ,128,1,0,0,0,0,0,0,NULL,&atx[99],NULL,0,&atx[142]} ,
- {0, "data" ,128,2,0,1,0,0,0,0,NULL,&atx[126],NULL,0,NULL} ,
- {0, "error" ,128,3,0,1,0,0,0,0,NULL,&atx[18],&atx[144],0,&atx[149]} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[145],NULL,0,NULL} ,
- {427, "ID2-Error" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[146],0,&atx[119]} ,
- {0, "severity" ,128,0,0,0,0,0,0,0,NULL,&atx[20],&avnx[19],0,&atx[147]} ,
- {0, "retry-delay" ,128,1,0,1,0,0,0,0,NULL,&atx[9],NULL,0,&atx[148]} ,
- {0, "message" ,128,2,0,1,0,0,0,0,NULL,&atx[15],NULL,0,NULL} ,
- {0, "end-of-reply" ,128,4,0,0,0,0,0,0,NULL,&atx[150],NULL,0,NULL} ,
- {301, "BOOLEAN" ,0,1,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
- {430, "ID2S-Split-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[152],0,&atx[154]} ,
- {0, "bioseqs-info" ,128,0,0,1,0,0,0,0,NULL,&atx[45],&atx[153],0,&atx[166]} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[154],NULL,0,NULL} ,
- {431, "ID2S-Bioseqs-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[155],0,&atx[168]} ,
- {0, "info" ,128,0,0,0,0,0,0,0,NULL,&atx[156],NULL,0,&atx[165]} ,
- {433, "ID2S-Bioseq-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[157],0,&atx[78]} ,
- {0, "gap-count" ,128,0,0,1,0,0,0,0,NULL,&atx[9],NULL,0,&atx[158]} ,
- {0, "seq-map-has-ref" ,128,1,0,1,0,0,0,0,NULL,&atx[150],NULL,0,&atx[159]} ,
- {0, "sequence-split" ,128,2,0,1,0,0,0,0,NULL,&atx[160],NULL,0,NULL} ,
- {435, "ID2S-Sequence-Split-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[161],0,&atx[172]} ,
- {0, "block-size" ,128,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[162]} ,
- {0, "chunk-start" ,128,1,0,0,0,0,0,0,NULL,&atx[99],NULL,0,&atx[163]} ,
- {0, "chunk-blocks" ,128,2,0,0,0,0,0,0,NULL,&atx[18],&atx[164],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[9],NULL,0,NULL} ,
- {0, "bioseqs" ,128,1,0,0,0,0,0,0,NULL,&atx[78],NULL,0,NULL} ,
- {0, "chunks" ,128,1,0,0,0,0,0,0,NULL,&atx[45],&atx[167],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[168],NULL,0,NULL} ,
- {432, "ID2S-Chunk-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[169],0,&atx[156]} ,
- {0, "id" ,128,0,0,0,0,0,0,0,NULL,&atx[99],NULL,0,&atx[170]} ,
- {0, "content" ,128,1,0,0,0,0,0,0,NULL,&atx[45],&atx[171],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[172],NULL,0,NULL} ,
- {436, "ID2S-Chunk-Content" ,1,0,0,0,0,0,0,0,NULL,&atx[42],&atx[173],0,&atx[174]} ,
- {0, "seq-descr" ,128,0,0,0,0,0,0,0,NULL,&atx[174],NULL,0,&atx[180]} ,
- {437, "ID2S-Seq-descr-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[175],0,&atx[181]} ,
- {0, "type-mask" ,128,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[176]} ,
- {0, "bioseqs" ,128,1,0,1,0,0,0,0,NULL,&atx[45],&atx[177],0,&atx[178]} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[78],NULL,0,NULL} ,
- {0, "bioseq-sets" ,128,2,0,1,0,0,0,0,NULL,&atx[45],&atx[179],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[78],NULL,0,NULL} ,
- {0, "seq-annot" ,128,1,0,0,0,0,0,0,NULL,&atx[181],NULL,0,&atx[192]} ,
- {438, "ID2S-Seq-annot-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[182],0,&atx[193]} ,
- {0, "name" ,128,0,0,1,0,0,0,0,NULL,&atx[15],NULL,0,&atx[183]} ,
- {0, "align" ,128,1,0,1,0,0,0,0,NULL,&atx[24],NULL,0,&atx[184]} ,
- {0, "graph" ,128,2,0,1,0,0,0,0,NULL,&atx[24],NULL,0,&atx[185]} ,
- {0, "feat" ,128,3,0,1,0,0,0,0,NULL,&atx[45],&atx[186],0,&atx[191]} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[187],NULL,0,NULL} ,
- {442, "ID2S-Feat-type-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[188],0,&atx[200]} ,
- {0, "type" ,128,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[189]} ,
- {0, "subtypes" ,128,1,0,1,0,0,0,0,NULL,&atx[45],&atx[190],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[9],NULL,0,NULL} ,
- {0, "seq-loc" ,128,4,0,0,0,0,0,0,NULL,&atx[62],NULL,0,NULL} ,
- {0, "seq-assembly" ,128,2,0,0,0,0,0,0,NULL,&atx[193],NULL,0,&atx[196]} ,
- {439, "ID2S-Seq-assembly-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[194],0,&atx[197]} ,
- {0, "bioseqs" ,128,0,0,0,0,0,0,0,NULL,&atx[45],&atx[195],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[78],NULL,0,NULL} ,
- {0, "seq-map" ,128,3,0,0,0,0,0,0,NULL,&atx[197],NULL,0,&atx[198]} ,
- {440, "ID2S-Seq-map-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[62],NULL,0,&atx[199]} ,
- {0, "seq-data" ,128,4,0,0,0,0,0,0,NULL,&atx[199],NULL,0,NULL} ,
- {441, "ID2S-Seq-data-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[62],NULL,0,&atx[187]} ,
- {443, "ID2S-Chunk" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[201],0,&atx[203]} ,
- {0, "data" ,128,0,0,0,0,0,0,0,NULL,&atx[45],&atx[202],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[203],NULL,0,NULL} ,
- {444, "ID2S-Chunk-Data" ,1,0,0,0,0,0,0,0,NULL,&atx[21],&atx[204],0,&atx[65]} ,
- {0, "id" ,128,0,0,0,0,0,0,0,NULL,&atx[42],&atx[205],0,&atx[207]} ,
- {0, "bioseq-set" ,128,0,0,0,0,0,0,0,NULL,&atx[9],NULL,0,&atx[206]} ,
- {0, "gi" ,128,1,0,0,0,0,0,0,NULL,&atx[9],NULL,0,NULL} ,
- {0, "descrs" ,128,1,0,1,0,0,0,0,NULL,&atx[45],&atx[208],0,&atx[209]} ,
+ {0, "seq-id-type" ,128,1,0,0,1,0,0,0,&avnx[10],&atx[8],&avnx[5],0,NULL} ,
+ {0, "get-blob-id" ,128,3,0,0,0,0,0,0,NULL,&atx[38],NULL,0,&atx[43]} ,
+ {410, "ID2-Request-Get-Blob-Id" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[39],0,&atx[44]} ,
+ {0, "seq-id" ,128,0,0,0,0,0,0,0,NULL,&atx[30],NULL,0,&atx[40]} ,
+ {0, "sources" ,128,1,0,1,0,0,0,0,NULL,&atx[17],&atx[41],0,&atx[42]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[14],NULL,0,NULL} ,
+ {0, "external" ,128,2,0,1,0,0,0,0,NULL,&atx[23],NULL,0,NULL} ,
+ {0, "get-blob-info" ,128,4,0,0,0,0,0,0,NULL,&atx[44],NULL,0,&atx[66]} ,
+ {411, "ID2-Request-Get-Blob-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[45],0,&atx[67]} ,
+ {0, "blob-id" ,128,0,0,0,0,0,0,0,NULL,&atx[35],&atx[46],0,&atx[56]} ,
+ {0, "blob-id" ,128,0,0,0,0,0,0,0,NULL,&atx[47],NULL,0,&atx[52]} ,
+ {415, "ID2-Blob-Id" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[48],0,&atx[58]} ,
+ {0, "sat" ,128,0,0,0,0,0,0,0,NULL,&atx[8],NULL,0,&atx[49]} ,
+ {0, "sub-sat" ,128,1,0,0,1,0,0,0,&avnx[14],&atx[8],&avnx[11],0,&atx[50]} ,
+ {0, "sat-key" ,128,2,0,0,0,0,0,0,NULL,&atx[8],NULL,0,&atx[51]} ,
+ {0, "version" ,128,3,0,1,0,0,0,0,NULL,&atx[8],NULL,0,NULL} ,
+ {0, "resolve" ,128,1,0,0,0,0,0,0,NULL,&atx[20],&atx[53],0,NULL} ,
+ {0, "request" ,128,0,0,0,0,0,0,0,NULL,&atx[38],NULL,0,&atx[54]} ,
+ {0, "exclude-blobs" ,128,1,0,1,0,0,0,0,NULL,&atx[17],&atx[55],0,NULL} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[47],NULL,0,NULL} ,
+ {0, "get-seq-ids" ,128,1,0,1,0,0,0,0,NULL,&atx[23],NULL,0,&atx[57]} ,
+ {0, "get-data" ,128,2,0,1,0,0,0,0,NULL,&atx[58],NULL,0,NULL} ,
+ {416, "ID2-Get-Blob-Details" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[59],0,&atx[76]} ,
+ {0, "location" ,128,0,0,1,0,0,0,0,NULL,&atx[1],NULL,0,&atx[60]} ,
+ {0, "seq-class-level" ,128,1,0,0,1,0,0,0,&avnx[15],&atx[8],NULL,0,&atx[61]} ,
+ {0, "descr-level" ,128,2,0,0,1,0,0,0,&avnx[16],&atx[8],NULL,0,&atx[62]} ,
+ {0, "descr-type-mask" ,128,3,0,0,1,0,0,0,&avnx[17],&atx[8],NULL,0,&atx[63]} ,
+ {0, "annot-type-mask" ,128,4,0,0,1,0,0,0,&avnx[18],&atx[8],NULL,0,&atx[64]} ,
+ {0, "feat-type-mask" ,128,5,0,0,1,0,0,0,&avnx[19],&atx[8],NULL,0,&atx[65]} ,
+ {0, "sequence-level" ,128,6,0,0,1,0,0,0,&avnx[23],&atx[19],&avnx[20],0,NULL} ,
+ {0, "reget-blob" ,128,5,0,0,0,0,0,0,NULL,&atx[67],NULL,0,&atx[71]} ,
+ {412, "ID2-Request-ReGet-Blob" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[68],0,&atx[72]} ,
+ {0, "blob-id" ,128,0,0,0,0,0,0,0,NULL,&atx[47],NULL,0,&atx[69]} ,
+ {0, "split-version" ,128,1,0,0,0,0,0,0,NULL,&atx[8],NULL,0,&atx[70]} ,
+ {0, "offset" ,128,2,0,0,0,0,0,0,NULL,&atx[8],NULL,0,NULL} ,
+ {0, "get-chunks" ,128,6,0,0,0,0,0,0,NULL,&atx[72],NULL,0,NULL} ,
+ {413, "ID2S-Request-Get-Chunks" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[73],0,&atx[32]} ,
+ {0, "blob-id" ,128,0,0,0,0,0,0,0,NULL,&atx[47],NULL,0,&atx[74]} ,
+ {0, "chunks" ,128,1,0,0,0,0,0,0,NULL,&atx[17],&atx[75],0,NULL} ,
{0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[2],NULL,0,NULL} ,
- {0, "annots" ,128,2,0,1,0,0,0,0,NULL,&atx[45],&atx[210],0,&atx[211]} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[1],NULL,0,NULL} ,
- {0, "assembly" ,128,3,0,1,0,0,0,0,NULL,&atx[45],&atx[212],0,&atx[213]} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[4],NULL,0,NULL} ,
- {0, "seq-map" ,128,4,0,1,0,0,0,0,NULL,&atx[18],&atx[214],0,&atx[215]} ,
+ {417, "ID2-Reply" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[77],0,&atx[81]} ,
+ {0, "serial-number" ,128,0,0,1,0,0,0,0,NULL,&atx[8],NULL,0,&atx[78]} ,
+ {0, "params" ,128,1,0,1,0,0,0,0,NULL,&atx[10],NULL,0,&atx[79]} ,
+ {0, "error" ,128,2,0,1,0,0,0,0,NULL,&atx[17],&atx[80],0,&atx[85]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[81],NULL,0,NULL} ,
+ {418, "ID2-Error" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[82],0,&atx[90]} ,
+ {0, "severity" ,128,0,0,0,0,0,0,0,NULL,&atx[19],&avnx[24],0,&atx[83]} ,
+ {0, "retry-delay" ,128,1,0,1,0,0,0,0,NULL,&atx[8],NULL,0,&atx[84]} ,
+ {0, "message" ,128,2,0,1,0,0,0,0,NULL,&atx[14],NULL,0,NULL} ,
+ {0, "end-of-reply" ,128,3,0,1,0,0,0,0,NULL,&atx[23],NULL,0,&atx[86]} ,
+ {0, "reply" ,128,4,0,0,0,0,0,0,NULL,&atx[35],&atx[87],0,NULL} ,
+ {0, "init" ,128,0,0,0,0,0,0,0,NULL,&atx[23],NULL,0,&atx[88]} ,
+ {0, "empty" ,128,1,0,0,0,0,0,0,NULL,&atx[23],NULL,0,&atx[89]} ,
+ {0, "get-package" ,128,2,0,0,0,0,0,0,NULL,&atx[90],NULL,0,&atx[93]} ,
+ {419, "ID2-Reply-Get-Package" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[91],0,&atx[94]} ,
+ {0, "name" ,128,0,0,0,0,0,0,0,NULL,&atx[14],NULL,0,&atx[92]} ,
+ {0, "params" ,128,1,0,1,0,0,0,0,NULL,&atx[10],NULL,0,NULL} ,
+ {0, "get-seq-id" ,128,3,0,0,0,0,0,0,NULL,&atx[94],NULL,0,&atx[98]} ,
+ {420, "ID2-Reply-Get-Seq-id" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[95],0,&atx[99]} ,
+ {0, "request" ,128,0,0,0,0,0,0,0,NULL,&atx[30],NULL,0,&atx[96]} ,
+ {0, "seq-id" ,128,1,0,1,0,0,0,0,NULL,&atx[17],&atx[97],0,NULL} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[0],NULL,0,NULL} ,
+ {0, "get-blob-id" ,128,4,0,0,0,0,0,0,NULL,&atx[99],NULL,0,&atx[105]} ,
+ {421, "ID2-Reply-Get-Blob-Id" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[100],0,&atx[106]} ,
+ {0, "seq-id" ,128,0,0,0,0,0,0,0,NULL,&atx[0],NULL,0,&atx[101]} ,
+ {0, "blob-id" ,128,1,0,0,0,0,0,0,NULL,&atx[47],NULL,0,&atx[102]} ,
+ {0, "split-version" ,128,2,0,0,1,0,0,0,&avnx[32],&atx[8],NULL,0,&atx[103]} ,
+ {0, "annot-info" ,128,3,0,1,0,0,0,0,NULL,&atx[17],&atx[104],0,NULL} ,
{0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[3],NULL,0,NULL} ,
- {0, "seq-data" ,128,5,0,1,0,0,0,0,NULL,&atx[18],&atx[216],0,NULL} ,
- {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[3],NULL,0,NULL} };
+ {0, "get-blob-seq-ids" ,128,5,0,0,0,0,0,0,NULL,&atx[106],NULL,0,&atx[116]} ,
+ {422, "ID2-Reply-Get-Blob-Seq-ids" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[107],0,&atx[117]} ,
+ {0, "blob-id" ,128,0,0,0,0,0,0,0,NULL,&atx[47],NULL,0,&atx[108]} ,
+ {0, "ids" ,128,1,0,1,0,0,0,0,NULL,&atx[109],NULL,0,NULL} ,
+ {427, "ID2-Reply-Data" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[110],0,&atx[137]} ,
+ {0, "data-type" ,128,0,0,0,1,0,0,0,&avnx[37],&atx[8],&avnx[33],0,&atx[111]} ,
+ {0, "data-format" ,128,1,0,0,1,0,0,0,&avnx[41],&atx[8],&avnx[38],0,&atx[112]} ,
+ {0, "data-compression" ,128,2,0,0,1,0,0,0,&avnx[46],&atx[8],&avnx[42],0,&atx[113]} ,
+ {0, "data" ,128,3,0,0,0,0,0,0,NULL,&atx[17],&atx[114],0,NULL} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[115],NULL,0,NULL} ,
+ {304, "OCTET STRING" ,0,4,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
+ {0, "get-blob" ,128,6,0,0,0,0,0,0,NULL,&atx[117],NULL,0,&atx[121]} ,
+ {423, "ID2-Reply-Get-Blob" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[118],0,&atx[122]} ,
+ {0, "blob-id" ,128,0,0,0,0,0,0,0,NULL,&atx[47],NULL,0,&atx[119]} ,
+ {0, "split-version" ,128,1,0,0,1,0,0,0,&avnx[47],&atx[8],NULL,0,&atx[120]} ,
+ {0, "data" ,128,2,0,1,0,0,0,0,NULL,&atx[109],NULL,0,NULL} ,
+ {0, "reget-blob" ,128,7,0,0,0,0,0,0,NULL,&atx[122],NULL,0,&atx[127]} ,
+ {424, "ID2-Reply-ReGet-Blob" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[123],0,&atx[128]} ,
+ {0, "blob-id" ,128,0,0,0,0,0,0,0,NULL,&atx[47],NULL,0,&atx[124]} ,
+ {0, "split-version" ,128,1,0,0,0,0,0,0,NULL,&atx[8],NULL,0,&atx[125]} ,
+ {0, "offset" ,128,2,0,0,0,0,0,0,NULL,&atx[8],NULL,0,&atx[126]} ,
+ {0, "data" ,128,3,0,1,0,0,0,0,NULL,&atx[109],NULL,0,NULL} ,
+ {0, "get-split-info" ,128,8,0,0,0,0,0,0,NULL,&atx[128],NULL,0,&atx[132]} ,
+ {425, "ID2S-Reply-Get-Split-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[129],0,&atx[133]} ,
+ {0, "blob-id" ,128,0,0,0,0,0,0,0,NULL,&atx[47],NULL,0,&atx[130]} ,
+ {0, "split-version" ,128,1,0,0,0,0,0,0,NULL,&atx[8],NULL,0,&atx[131]} ,
+ {0, "data" ,128,2,0,1,0,0,0,0,NULL,&atx[109],NULL,0,NULL} ,
+ {0, "get-chunk" ,128,9,0,0,0,0,0,0,NULL,&atx[133],NULL,0,NULL} ,
+ {426, "ID2S-Reply-Get-Chunk" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[134],0,&atx[109]} ,
+ {0, "blob-id" ,128,0,0,0,0,0,0,0,NULL,&atx[47],NULL,0,&atx[135]} ,
+ {0, "chunk-id" ,128,1,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[136]} ,
+ {0, "data" ,128,2,0,1,0,0,0,0,NULL,&atx[109],NULL,0,NULL} ,
+ {428, "ID2-Blob-Seq-ids" ,1,0,0,0,0,0,0,0,NULL,&atx[17],&atx[138],0,&atx[139]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[139],NULL,0,NULL} ,
+ {429, "ID2-Blob-Seq-id" ,1,0,0,0,0,0,0,0,NULL,&atx[20],&atx[140],0,&atx[12]} ,
+ {0, "seq-id" ,128,0,0,0,0,0,0,0,NULL,&atx[0],NULL,0,&atx[141]} ,
+ {0, "replaced" ,128,1,0,1,0,0,0,0,NULL,&atx[23],NULL,0,NULL} };
static AsnModule ampx[1] = {
- { "NCBI-ID2Access" , "id2.h14",&atx[0],NULL,NULL,0,0} };
+ { "NCBI-ID2Access" , "id2.h10",&atx[0],NULL,NULL,0,0} };
static AsnValxNodePtr avn = avnx;
static AsnTypePtr at = atx;
@@ -273,247 +219,158 @@ static AsnModulePtr amp = ampx;
*
**************************************************/
-#define ID2_REQUEST_PACKET &at[5]
-#define ID2_REQUEST_PACKET_E &at[6]
-
-#define ID2_REQUEST &at[7]
-#define ID2_REQUEST_serial_number &at[8]
-#define ID2_REQUEST_params &at[10]
-#define ID2_REQUEST_request &at[22]
-#define ID2_REQUEST_request_init &at[23]
-#define REQUEST_request_get_packages &at[25]
-#define REQUEST_request_string_to_gi &at[30]
-#define REQUEST_request_seq_id_to_gi &at[33]
-#define REQUEST_request_gi_to_tse_id &at[36]
-#define ID2_REQUEST_request_get_tse &at[48]
-#define ID2_REQUEST_request_reget_tse &at[89]
-#define ID2_REQUEST_request_get_chunks &at[94]
-
-#define ID2_PARAMS &at[11]
-#define ID2_PARAMS_E &at[12]
-
-#define ID2_REQUEST_GET_PACKAGES &at[26]
-#define ID2_REQUEST_GET_PACKAGES_names &at[27]
-#define REQUEST_GET_PACKAGES_names_E &at[28]
-#define GET_PACKAGES_no_contents &at[29]
-
-#define ID2_REQUEST_STRING_TO_GI &at[31]
-#define ID2_REQUEST_STRING_TO_GI_id &at[32]
-
-#define ID2_REQUEST_SEQ_ID_TO_GI &at[34]
-#define ID2_REQUEST_SEQ_ID_TO_GI_seq_id &at[35]
-
-#define ID2_REQUEST_GI_TO_TSE_ID &at[37]
-#define ID2_REQUEST_GI_TO_TSE_ID_gi &at[38]
-#define ID2_REQUEST_GI_TO_TSE_ID_gi_gi &at[39]
-#define REQUEST_GI_TO_TSE_ID_gi_string &at[40]
-#define REQUEST_GI_TO_TSE_ID_gi_seq_id &at[41]
-#define REQUEST_GI_TO_TSE_ID_sources &at[43]
-#define REQUEST_GI_TO_TSE_ID_sources_E &at[44]
-#define REQUEST_GI_TO_TSE_ID_external &at[46]
-#define GI_TO_TSE_ID_current_gis &at[47]
-
-#define ID2_REQUEST_GET_TSE &at[49]
-#define ID2_REQUEST_GET_TSE_tse_id &at[50]
-#define REQUEST_GET_TSE_tse_id_tse_id &at[51]
-#define ID2_REQUEST_GET_TSE_tse_id_gi &at[55]
-#define GET_TSE_tse_id_gi_request &at[56]
-#define GET_TSE_tse_id_gi_exclude_tses &at[57]
-#define TSE_tse_id_gi_exclude_tses_E &at[58]
-#define ID2_REQUEST_GET_TSE_details &at[59]
-
-#define ID2_REQUEST_REGET_TSE &at[90]
-#define ID2_REQUEST_REGET_TSE_tse_id &at[91]
-#define ID2_REQUEST_REGET_TSE_details &at[92]
-#define ID2_REQUEST_REGET_TSE_offset &at[93]
-
-#define ID2S_REQUEST_GET_CHUNKS &at[95]
-#define ID2S_REQUEST_GET_CHUNKS_tse_id &at[96]
-#define ID2S_REQUEST_GET_CHUNKS_chunks &at[97]
-#define REQUEST_GET_CHUNKS_chunks_E &at[98]
-
-#define ID2_TSE_ID &at[52]
-#define ID2_TSE_ID_sat &at[53]
-#define ID2_TSE_ID_sat_key &at[54]
-
-#define ID2_GET_TSE_DETAILS &at[60]
-#define ID2_GET_TSE_DETAILS_location &at[61]
-#define TSE_DETAILS_seq_class_level &at[83]
-#define ID2_GET_TSE_DETAILS_descr_level &at[84]
-#define TSE_DETAILS_descr_type_mask &at[85]
-#define TSE_DETAILS_annot_type_mask &at[86]
-#define GET_TSE_DETAILS_feat_type_mask &at[87]
-#define GET_TSE_DETAILS_sequence_level &at[88]
-
-#define ID2S_CHUNK_ID &at[99]
-
-#define ID2_SEQ_LOC &at[62]
-#define ID2_SEQ_LOC_whole &at[63]
-#define ID2_SEQ_LOC_int &at[64]
-#define ID2_SEQ_LOC_int_set &at[69]
-#define ID2_SEQ_LOC_whole_range &at[77]
-#define ID2_SEQ_LOC_loc_set &at[81]
-#define ID2_SEQ_LOC_loc_set_E &at[82]
-
-#define ID2_REPLY &at[100]
-#define ID2_REPLY_serial_number &at[101]
-#define ID2_REPLY_params &at[102]
-#define ID2_REPLY_reply &at[103]
-#define ID2_REPLY_reply_init &at[104]
-#define ID2_REPLY_reply_get_package &at[105]
-#define ID2_REPLY_reply_seq_id_to_gi &at[109]
-#define ID2_REPLY_reply_gi_to_tse_id &at[113]
-#define ID2_REPLY_reply_get_tse &at[122]
-#define ID2_REPLY_reply_get_tse_info &at[133]
-#define ID2_REPLY_reply_get_chunk &at[138]
-#define ID2_REPLY_error &at[143]
-#define ID2_REPLY_error_E &at[144]
-#define ID2_REPLY_end_of_reply &at[149]
-
-#define ID2_REPLY_GET_PACKAGE &at[106]
-#define ID2_REPLY_GET_PACKAGE_name &at[107]
-#define ID2_REPLY_GET_PACKAGE_params &at[108]
-
-#define ID2_REPLY_SEQ_ID_TO_GI &at[110]
-#define ID2_REPLY_SEQ_ID_TO_GI_seq_id &at[111]
-#define ID2_REPLY_SEQ_ID_TO_GI_gi &at[112]
-
-#define ID2_REPLY_GI_TO_TSE_ID &at[114]
-#define ID2_REPLY_GI_TO_TSE_ID_gi &at[115]
-#define ID2_REPLY_GI_TO_TSE_ID_source &at[116]
-#define ID2_REPLY_GI_TO_TSE_ID_tses &at[117]
-#define ID2_REPLY_GI_TO_TSE_ID_tses_E &at[118]
-
-#define ID2_REPLY_GET_TSE &at[123]
-#define ID2_REPLY_GET_TSE_tse_id &at[124]
-#define ID2_REPLY_GET_TSE_data &at[125]
-
-#define ID2S_REPLY_GET_TSE_INFO &at[134]
-#define ID2S_REPLY_GET_TSE_INFO_tse_id &at[135]
-#define GET_TSE_INFO_split_version &at[136]
-#define ID2S_REPLY_GET_TSE_INFO_info &at[137]
-
-#define ID2S_REPLY_GET_CHUNK &at[139]
-#define ID2S_REPLY_GET_CHUNK_tse_id &at[140]
-#define ID2S_REPLY_GET_CHUNK_chunk_id &at[141]
-#define ID2S_REPLY_GET_CHUNK_data &at[142]
-
-#define ID2_ERROR &at[145]
-#define ID2_ERROR_severity &at[146]
-#define ID2_ERROR_retry_delay &at[147]
-#define ID2_ERROR_message &at[148]
-
-#define ID2_TSE_ID_INFO &at[119]
-#define ID2_TSE_ID_INFO_tse_id &at[120]
-#define ID2_TSE_ID_INFO_split_version &at[121]
-
-#define ID2_REPLY_DATA &at[126]
-#define ID2_REPLY_DATA_data_type &at[127]
-#define ID2_REPLY_DATA_data_format &at[128]
-#define ID2_REPLY_DATA_data_compression &at[129]
-#define ID2_REPLY_DATA_data &at[130]
-#define ID2_REPLY_DATA_data_E &at[131]
-
-#define ID2S_SPLIT_INFO &at[151]
-#define ID2S_SPLIT_INFO_bioseqs_info &at[152]
-#define ID2S_SPLIT_INFO_bioseqs_info_E &at[153]
-#define ID2S_SPLIT_INFO_chunks &at[166]
-#define ID2S_SPLIT_INFO_chunks_E &at[167]
-
-#define ID2S_BIOSEQS_INFO &at[154]
-#define ID2S_BIOSEQS_INFO_info &at[155]
-#define ID2S_BIOSEQS_INFO_bioseqs &at[165]
-
-#define ID2S_CHUNK_INFO &at[168]
-#define ID2S_CHUNK_INFO_id &at[169]
-#define ID2S_CHUNK_INFO_content &at[170]
-#define ID2S_CHUNK_INFO_content_E &at[171]
-
-#define ID2S_BIOSEQ_INFO &at[156]
-#define ID2S_BIOSEQ_INFO_gap_count &at[157]
-#define BIOSEQ_INFO_seq_map_has_ref &at[158]
-#define ID2S_BIOSEQ_INFO_sequence_split &at[159]
-
-#define ID2_ID_RANGE &at[78]
-#define ID2_ID_RANGE_start &at[79]
-#define ID2_ID_RANGE_count &at[80]
-
-#define ID2S_SEQUENCE_SPLIT_INFO &at[160]
-#define SEQUENCE_SPLIT_INFO_block_size &at[161]
-#define SPLIT_INFO_chunk_start &at[162]
-#define SPLIT_INFO_chunk_blocks &at[163]
-#define SPLIT_INFO_chunk_blocks_E &at[164]
-
-#define ID2S_CHUNK_CONTENT &at[172]
-#define ID2S_CHUNK_CONTENT_seq_descr &at[173]
-#define ID2S_CHUNK_CONTENT_seq_annot &at[180]
-#define ID2S_CHUNK_CONTENT_seq_assembly &at[192]
-#define ID2S_CHUNK_CONTENT_seq_map &at[196]
-#define ID2S_CHUNK_CONTENT_seq_data &at[198]
-
-#define ID2S_SEQ_DESCR_INFO &at[174]
-#define ID2S_SEQ_DESCR_INFO_type_mask &at[175]
-#define ID2S_SEQ_DESCR_INFO_bioseqs &at[176]
-#define ID2S_SEQ_DESCR_INFO_bioseqs_E &at[177]
-#define ID2S_SEQ_DESCR_INFO_bioseq_sets &at[178]
-#define SEQ_DESCR_INFO_bioseq_sets_E &at[179]
-
-#define ID2S_SEQ_ANNOT_INFO &at[181]
-#define ID2S_SEQ_ANNOT_INFO_name &at[182]
-#define ID2S_SEQ_ANNOT_INFO_align &at[183]
-#define ID2S_SEQ_ANNOT_INFO_graph &at[184]
-#define ID2S_SEQ_ANNOT_INFO_feat &at[185]
-#define ID2S_SEQ_ANNOT_INFO_feat_E &at[186]
-#define ID2S_SEQ_ANNOT_INFO_seq_loc &at[191]
-
-#define ID2S_SEQ_ASSEMBLY_INFO &at[193]
-#define ID2S_SEQ_ASSEMBLY_INFO_bioseqs &at[194]
-#define SEQ_ASSEMBLY_INFO_bioseqs_E &at[195]
-
-#define ID2S_SEQ_MAP_INFO &at[197]
-
-#define ID2S_SEQ_DATA_INFO &at[199]
-
-#define ID2S_FEAT_TYPE_INFO &at[187]
-#define ID2S_FEAT_TYPE_INFO_type &at[188]
-#define ID2S_FEAT_TYPE_INFO_subtypes &at[189]
-#define ID2S_FEAT_TYPE_INFO_subtypes_E &at[190]
-
-#define ID2S_CHUNK &at[200]
-#define ID2S_CHUNK_data &at[201]
-#define ID2S_CHUNK_data_E &at[202]
-
-#define ID2S_CHUNK_DATA &at[203]
-#define ID2S_CHUNK_DATA_id &at[204]
-#define ID2S_CHUNK_DATA_id_bioseq_set &at[205]
-#define ID2S_CHUNK_DATA_id_gi &at[206]
-#define ID2S_CHUNK_DATA_descrs &at[207]
-#define ID2S_CHUNK_DATA_descrs_E &at[208]
-#define ID2S_CHUNK_DATA_annots &at[209]
-#define ID2S_CHUNK_DATA_annots_E &at[210]
-#define ID2S_CHUNK_DATA_assembly &at[211]
-#define ID2S_CHUNK_DATA_assembly_E &at[212]
-#define ID2S_CHUNK_DATA_seq_map &at[213]
-#define ID2S_CHUNK_DATA_seq_map_E &at[214]
-#define ID2S_CHUNK_DATA_seq_data &at[215]
-#define ID2S_CHUNK_DATA_seq_data_E &at[216]
-
-#define ID2_INTERVAL &at[65]
-#define ID2_INTERVAL_gi &at[66]
-#define ID2_INTERVAL_start &at[67]
-#define ID2_INTERVAL_length &at[68]
-
-#define ID2_PACKED_SEQ_INTS &at[70]
-#define ID2_PACKED_SEQ_INTS_gi &at[71]
-#define ID2_PACKED_SEQ_INTS_ints &at[72]
-#define ID2_PACKED_SEQ_INTS_ints_E &at[73]
-
-#define ID2_SEQ_RANGE &at[74]
-#define ID2_SEQ_RANGE_start &at[75]
-#define ID2_SEQ_RANGE_length &at[76]
-
-#define ID2_PARAM &at[13]
-#define ID2_PARAM_name &at[14]
-#define ID2_PARAM_value &at[16]
-#define ID2_PARAM_value_E &at[17]
-#define ID2_PARAM_type &at[19]
+#define ID2_REQUEST_PACKET &at[4]
+#define ID2_REQUEST_PACKET_E &at[5]
+
+#define ID2_REQUEST &at[6]
+#define ID2_REQUEST_serial_number &at[7]
+#define ID2_REQUEST_params &at[9]
+#define ID2_REQUEST_request &at[21]
+#define ID2_REQUEST_request_init &at[22]
+#define REQUEST_request_get_packages &at[24]
+#define ID2_REQUEST_request_get_seq_id &at[29]
+#define ID2_REQUEST_request_get_blob_id &at[37]
+#define REQUEST_request_get_blob_info &at[43]
+#define ID2_REQUEST_request_reget_blob &at[66]
+#define ID2_REQUEST_request_get_chunks &at[71]
+
+#define ID2_PARAMS &at[10]
+#define ID2_PARAMS_E &at[11]
+
+#define ID2_REQUEST_GET_PACKAGES &at[25]
+#define ID2_REQUEST_GET_PACKAGES_names &at[26]
+#define REQUEST_GET_PACKAGES_names_E &at[27]
+#define GET_PACKAGES_no_contents &at[28]
+
+#define ID2_REQUEST_GET_SEQ_ID &at[30]
+#define ID2_REQUEST_GET_SEQ_ID_seq_id &at[31]
+#define REQUEST_GET_SEQ_ID_seq_id_type &at[36]
+
+#define ID2_REQUEST_GET_BLOB_ID &at[38]
+#define ID2_REQUEST_GET_BLOB_ID_seq_id &at[39]
+#define ID2_REQUEST_GET_BLOB_ID_sources &at[40]
+#define REQUEST_GET_BLOB_ID_sources_E &at[41]
+#define REQUEST_GET_BLOB_ID_external &at[42]
+
+#define ID2_REQUEST_GET_BLOB_INFO &at[44]
+#define REQUEST_GET_BLOB_INFO_blob_id &at[45]
+#define GET_BLOB_INFO_blob_id_blob_id &at[46]
+#define GET_BLOB_INFO_blob_id_resolve &at[52]
+#define INFO_blob_id_resolve_request &at[53]
+#define blob_id_resolve_exclude_blobs &at[54]
+#define id_resolve_exclude_blobs_E &at[55]
+#define GET_BLOB_INFO_get_seq_ids &at[56]
+#define REQUEST_GET_BLOB_INFO_get_data &at[57]
+
+#define ID2_REQUEST_REGET_BLOB &at[67]
+#define ID2_REQUEST_REGET_BLOB_blob_id &at[68]
+#define REGET_BLOB_split_version &at[69]
+#define ID2_REQUEST_REGET_BLOB_offset &at[70]
+
+#define ID2S_REQUEST_GET_CHUNKS &at[72]
+#define ID2S_REQUEST_GET_CHUNKS_blob_id &at[73]
+#define ID2S_REQUEST_GET_CHUNKS_chunks &at[74]
+#define REQUEST_GET_CHUNKS_chunks_E &at[75]
+
+#define ID2_SEQ_ID &at[32]
+#define ID2_SEQ_ID_string &at[33]
+#define ID2_SEQ_ID_seq_id &at[34]
+
+#define ID2_BLOB_ID &at[47]
+#define ID2_BLOB_ID_sat &at[48]
+#define ID2_BLOB_ID_sub_sat &at[49]
+#define ID2_BLOB_ID_sat_key &at[50]
+#define ID2_BLOB_ID_version &at[51]
+
+#define ID2_GET_BLOB_DETAILS &at[58]
+#define ID2_GET_BLOB_DETAILS_location &at[59]
+#define BLOB_DETAILS_seq_class_level &at[60]
+#define GET_BLOB_DETAILS_descr_level &at[61]
+#define BLOB_DETAILS_descr_type_mask &at[62]
+#define BLOB_DETAILS_annot_type_mask &at[63]
+#define BLOB_DETAILS_feat_type_mask &at[64]
+#define BLOB_DETAILS_sequence_level &at[65]
+
+#define ID2_REPLY &at[76]
+#define ID2_REPLY_serial_number &at[77]
+#define ID2_REPLY_params &at[78]
+#define ID2_REPLY_error &at[79]
+#define ID2_REPLY_error_E &at[80]
+#define ID2_REPLY_end_of_reply &at[85]
+#define ID2_REPLY_reply &at[86]
+#define ID2_REPLY_reply_init &at[87]
+#define ID2_REPLY_reply_empty &at[88]
+#define ID2_REPLY_reply_get_package &at[89]
+#define ID2_REPLY_reply_get_seq_id &at[93]
+#define ID2_REPLY_reply_get_blob_id &at[98]
+#define REPLY_reply_get_blob_seq_ids &at[105]
+#define ID2_REPLY_reply_get_blob &at[116]
+#define ID2_REPLY_reply_reget_blob &at[121]
+#define ID2_REPLY_reply_get_split_info &at[127]
+#define ID2_REPLY_reply_get_chunk &at[132]
+
+#define ID2_ERROR &at[81]
+#define ID2_ERROR_severity &at[82]
+#define ID2_ERROR_retry_delay &at[83]
+#define ID2_ERROR_message &at[84]
+
+#define ID2_REPLY_GET_PACKAGE &at[90]
+#define ID2_REPLY_GET_PACKAGE_name &at[91]
+#define ID2_REPLY_GET_PACKAGE_params &at[92]
+
+#define ID2_REPLY_GET_SEQ_ID &at[94]
+#define ID2_REPLY_GET_SEQ_ID_request &at[95]
+#define ID2_REPLY_GET_SEQ_ID_seq_id &at[96]
+#define ID2_REPLY_GET_SEQ_ID_seq_id_E &at[97]
+
+#define ID2_REPLY_GET_BLOB_ID &at[99]
+#define ID2_REPLY_GET_BLOB_ID_seq_id &at[100]
+#define ID2_REPLY_GET_BLOB_ID_blob_id &at[101]
+#define GET_BLOB_ID_split_version &at[102]
+#define REPLY_GET_BLOB_ID_annot_info &at[103]
+#define REPLY_GET_BLOB_ID_annot_info_E &at[104]
+
+#define ID2_REPLY_GET_BLOB_SEQ_IDS &at[106]
+#define REPLY_GET_BLOB_SEQ_IDS_blob_id &at[107]
+#define ID2_REPLY_GET_BLOB_SEQ_IDS_ids &at[108]
+
+#define ID2_REPLY_GET_BLOB &at[117]
+#define ID2_REPLY_GET_BLOB_blob_id &at[118]
+#define REPLY_GET_BLOB_split_version &at[119]
+#define ID2_REPLY_GET_BLOB_data &at[120]
+
+#define ID2_REPLY_REGET_BLOB &at[122]
+#define ID2_REPLY_REGET_BLOB_blob_id &at[123]
+#define REPLY_REGET_BLOB_split_version &at[124]
+#define ID2_REPLY_REGET_BLOB_offset &at[125]
+#define ID2_REPLY_REGET_BLOB_data &at[126]
+
+#define ID2S_REPLY_GET_SPLIT_INFO &at[128]
+#define REPLY_GET_SPLIT_INFO_blob_id &at[129]
+#define GET_SPLIT_INFO_split_version &at[130]
+#define ID2S_REPLY_GET_SPLIT_INFO_data &at[131]
+
+#define ID2S_REPLY_GET_CHUNK &at[133]
+#define ID2S_REPLY_GET_CHUNK_blob_id &at[134]
+#define ID2S_REPLY_GET_CHUNK_chunk_id &at[135]
+#define ID2S_REPLY_GET_CHUNK_data &at[136]
+
+#define ID2_REPLY_DATA &at[109]
+#define ID2_REPLY_DATA_data_type &at[110]
+#define ID2_REPLY_DATA_data_format &at[111]
+#define ID2_REPLY_DATA_data_compression &at[112]
+#define ID2_REPLY_DATA_data &at[113]
+#define ID2_REPLY_DATA_data_E &at[114]
+
+#define ID2_BLOB_SEQ_IDS &at[137]
+#define ID2_BLOB_SEQ_IDS_E &at[138]
+
+#define ID2_BLOB_SEQ_ID &at[139]
+#define ID2_BLOB_SEQ_ID_seq_id &at[140]
+#define ID2_BLOB_SEQ_ID_replaced &at[141]
+
+#define ID2_PARAM &at[12]
+#define ID2_PARAM_name &at[13]
+#define ID2_PARAM_value &at[15]
+#define ID2_PARAM_value_E &at[16]
+#define ID2_PARAM_type &at[18]
diff --git a/network/id2arch/id2gen.h b/network/id2arch/id2gen.h
index c17237b4..c88e6c92 100644
--- a/network/id2arch/id2gen.h
+++ b/network/id2arch/id2gen.h
@@ -17,7 +17,7 @@ extern "C" { /* } */
/**************************************************
*
* Generated objects for Module NCBI-ID2Access
-* Generated using ASNCODE Revision: 6.0 at Dec 15, 2003 5:08 PM
+* Generated using ASNCODE Revision: 6.0 at May 3, 2004 6:18 PM
*
**************************************************/
@@ -73,12 +73,11 @@ typedef ValNode Request_request;
#define Request_request_init 1
#define Request_request_get_packages 2
-#define Request_request_string_to_gi 3
-#define Request_request_seq_id_to_gi 4
-#define Request_request_gi_to_tse_id 5
-#define Request_request_get_tse 6
-#define Request_request_reget_tse 7
-#define Request_request_get_chunks 8
+#define Request_request_get_seq_id 3
+#define Request_request_get_blob_id 4
+#define Request_request_get_blob_info 5
+#define Request_request_reget_blob 6
+#define Request_request_get_chunks 7
#ifdef NLM_GENERATED_CODE_PROTO
@@ -130,110 +129,74 @@ NLM_EXTERN Boolean LIBCALL ID2RequestGetPackagesAsnWrite PROTO (( ID2RequestGetP
/**************************************************
*
-* ID2RequestStringToGi
+* ID2RequestGetSeqId
*
**************************************************/
-typedef struct struct_ID2_Request_String_To_Gi {
- CharPtr id;
-} ID2RequestStringToGi, PNTR ID2RequestStringToGiPtr;
-
-
-NLM_EXTERN ID2RequestStringToGiPtr LIBCALL ID2RequestStringToGiFree PROTO ((ID2RequestStringToGiPtr ));
-NLM_EXTERN ID2RequestStringToGiPtr LIBCALL ID2RequestStringToGiNew PROTO (( void ));
-NLM_EXTERN ID2RequestStringToGiPtr LIBCALL ID2RequestStringToGiAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2RequestStringToGiAsnWrite PROTO (( ID2RequestStringToGiPtr , AsnIoPtr, AsnTypePtr));
-
-
-
-/**************************************************
-*
-* ID2RequestSeqIdToGi
-*
-**************************************************/
-typedef struct struct_ID2_Request_Seq_id_To_Gi {
+typedef struct struct_ID2_Request_Get_Seq_id {
ValNodePtr seq_id;
-} ID2RequestSeqIdToGi, PNTR ID2RequestSeqIdToGiPtr;
+ Int4 seq_id_type;
+} ID2RequestGetSeqId, PNTR ID2RequestGetSeqIdPtr;
-NLM_EXTERN ID2RequestSeqIdToGiPtr LIBCALL ID2RequestSeqIdToGiFree PROTO ((ID2RequestSeqIdToGiPtr ));
-NLM_EXTERN ID2RequestSeqIdToGiPtr LIBCALL ID2RequestSeqIdToGiNew PROTO (( void ));
-NLM_EXTERN ID2RequestSeqIdToGiPtr LIBCALL ID2RequestSeqIdToGiAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2RequestSeqIdToGiAsnWrite PROTO (( ID2RequestSeqIdToGiPtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2RequestGetSeqIdPtr LIBCALL ID2RequestGetSeqIdFree PROTO ((ID2RequestGetSeqIdPtr ));
+NLM_EXTERN ID2RequestGetSeqIdPtr LIBCALL ID2RequestGetSeqIdNew PROTO (( void ));
+NLM_EXTERN ID2RequestGetSeqIdPtr LIBCALL ID2RequestGetSeqIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2RequestGetSeqIdAsnWrite PROTO (( ID2RequestGetSeqIdPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
-* ID2RequestGiToTSEId
+* ID2RequestGetBlobId
*
**************************************************/
-typedef struct struct_ID2_Request_Gi_To_TSE_Id {
- ValNodePtr Gi_gi;
+typedef struct struct_ID2_Request_Get_Blob_Id {
+ struct struct_ID2_Request_Get_Seq_id PNTR seq_id;
ValNodePtr sources;
Uint1 external;
- Uint1 current_gis;
-} ID2RequestGiToTSEId, PNTR ID2RequestGiToTSEIdPtr;
-
-
-NLM_EXTERN ID2RequestGiToTSEIdPtr LIBCALL ID2RequestGiToTSEIdFree PROTO ((ID2RequestGiToTSEIdPtr ));
-NLM_EXTERN ID2RequestGiToTSEIdPtr LIBCALL ID2RequestGiToTSEIdNew PROTO (( void ));
-NLM_EXTERN ID2RequestGiToTSEIdPtr LIBCALL ID2RequestGiToTSEIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2RequestGiToTSEIdAsnWrite PROTO (( ID2RequestGiToTSEIdPtr , AsnIoPtr, AsnTypePtr));
-
-
-#ifdef NLM_GENERATED_CODE_PROTO
-
-typedef ValNodePtr Gi_giPtr;
-typedef ValNode Gi_gi;
+} ID2RequestGetBlobId, PNTR ID2RequestGetBlobIdPtr;
-#endif /* NLM_GENERATED_CODE_PROTO */
-
-#define Gi_gi_gi 1
-#define Gi_gi_string 2
-#define Gi_gi_seq_id 3
-
-#ifdef NLM_GENERATED_CODE_PROTO
-static Gi_giPtr LIBCALL Gi_giFree PROTO ((Gi_giPtr ));
-static Gi_giPtr LIBCALL Gi_giAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-static Boolean LIBCALL Gi_giAsnWrite PROTO (( Gi_giPtr , AsnIoPtr, AsnTypePtr));
-
-#endif /* NLM_GENERATED_CODE_PROTO */
+NLM_EXTERN ID2RequestGetBlobIdPtr LIBCALL ID2RequestGetBlobIdFree PROTO ((ID2RequestGetBlobIdPtr ));
+NLM_EXTERN ID2RequestGetBlobIdPtr LIBCALL ID2RequestGetBlobIdNew PROTO (( void ));
+NLM_EXTERN ID2RequestGetBlobIdPtr LIBCALL ID2RequestGetBlobIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2RequestGetBlobIdAsnWrite PROTO (( ID2RequestGetBlobIdPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
-* ID2RequestGetTSE
+* ID2RequestGetBlobInfo
*
**************************************************/
-typedef struct struct_ID2_Request_Get_TSE {
- ValNodePtr TseId_tse_id;
- struct struct_ID2_Get_TSE_Details PNTR details;
-} ID2RequestGetTSE, PNTR ID2RequestGetTSEPtr;
+typedef struct struct_ID2_Request_Get_Blob_Info {
+ ValNodePtr BlobId_blob_id;
+ Uint1 get_seq_ids;
+ struct struct_ID2_Get_Blob_Details PNTR get_data;
+} ID2RequestGetBlobInfo, PNTR ID2RequestGetBlobInfoPtr;
-NLM_EXTERN ID2RequestGetTSEPtr LIBCALL ID2RequestGetTSEFree PROTO ((ID2RequestGetTSEPtr ));
-NLM_EXTERN ID2RequestGetTSEPtr LIBCALL ID2RequestGetTSENew PROTO (( void ));
-NLM_EXTERN ID2RequestGetTSEPtr LIBCALL ID2RequestGetTSEAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2RequestGetTSEAsnWrite PROTO (( ID2RequestGetTSEPtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2RequestGetBlobInfoPtr LIBCALL ID2RequestGetBlobInfoFree PROTO ((ID2RequestGetBlobInfoPtr ));
+NLM_EXTERN ID2RequestGetBlobInfoPtr LIBCALL ID2RequestGetBlobInfoNew PROTO (( void ));
+NLM_EXTERN ID2RequestGetBlobInfoPtr LIBCALL ID2RequestGetBlobInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2RequestGetBlobInfoAsnWrite PROTO (( ID2RequestGetBlobInfoPtr , AsnIoPtr, AsnTypePtr));
#ifdef NLM_GENERATED_CODE_PROTO
-typedef ValNodePtr TseId_tse_idPtr;
-typedef ValNode TseId_tse_id;
+typedef ValNodePtr BlobId_blob_idPtr;
+typedef ValNode BlobId_blob_id;
#endif /* NLM_GENERATED_CODE_PROTO */
-#define TseId_tse_id_tse_id 1
-#define TseId_tse_id_TseId_Gi 2
+#define BlobId_blob_id_blob_id 1
+#define BlobId_blob_id_BlobId_Resolve 2
#ifdef NLM_GENERATED_CODE_PROTO
-static TseId_tse_idPtr LIBCALL TseId_tse_idFree PROTO ((TseId_tse_idPtr ));
-static TseId_tse_idPtr LIBCALL TseId_tse_idAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-static Boolean LIBCALL TseId_tse_idAsnWrite PROTO (( TseId_tse_idPtr , AsnIoPtr, AsnTypePtr));
+static BlobId_blob_idPtr LIBCALL BlobId_blob_idFree PROTO ((BlobId_blob_idPtr ));
+static BlobId_blob_idPtr LIBCALL BlobId_blob_idAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+static Boolean LIBCALL BlobId_blob_idAsnWrite PROTO (( BlobId_blob_idPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
@@ -241,24 +204,24 @@ static Boolean LIBCALL TseId_tse_idAsnWrite PROTO (( TseId_tse_idPtr , AsnIoPtr,
/**************************************************
*
-* TseId_gi
+* BlobId_resolve
*
**************************************************/
#ifdef NLM_GENERATED_CODE_PROTO
-typedef struct struct_TseId_Gi {
- struct struct_ID2_Request_Gi_To_TSE_Id PNTR request;
- struct struct_ID2_TSE_Id PNTR exclude_tses;
-} TseId_gi, PNTR TseId_giPtr;
+typedef struct struct_BlobId_Resolve {
+ struct struct_ID2_Request_Get_Blob_Id PNTR request;
+ struct struct_ID2_Blob_Id PNTR exclude_blobs;
+} BlobId_resolve, PNTR BlobId_resolvePtr;
#endif /* NLM_GENERATED_CODE_PROTO */
#ifdef NLM_GENERATED_CODE_PROTO
-static TseId_giPtr LIBCALL TseId_giFree PROTO ((TseId_giPtr ));
-static TseId_giPtr LIBCALL TseId_giNew PROTO (( void ));
-static TseId_giPtr LIBCALL TseId_giAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-static Boolean LIBCALL TseId_giAsnWrite PROTO (( TseId_giPtr , AsnIoPtr, AsnTypePtr));
+static BlobId_resolvePtr LIBCALL BlobId_resolveFree PROTO ((BlobId_resolvePtr ));
+static BlobId_resolvePtr LIBCALL BlobId_resolveNew PROTO (( void ));
+static BlobId_resolvePtr LIBCALL BlobId_resolveAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+static Boolean LIBCALL BlobId_resolveAsnWrite PROTO (( BlobId_resolvePtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
@@ -266,20 +229,20 @@ static Boolean LIBCALL TseId_giAsnWrite PROTO (( TseId_giPtr , AsnIoPtr, AsnType
/**************************************************
*
-* ID2RequestReGetTSE
+* ID2RequestReGetBlob
*
**************************************************/
-typedef struct struct_ID2_Request_ReGet_TSE {
- struct struct_ID2_TSE_Id PNTR tse_id;
- struct struct_ID2_Get_TSE_Details PNTR details;
+typedef struct struct_ID2_Request_ReGet_Blob {
+ struct struct_ID2_Blob_Id PNTR blob_id;
+ Int4 split_version;
Int4 offset;
-} ID2RequestReGetTSE, PNTR ID2RequestReGetTSEPtr;
+} ID2RequestReGetBlob, PNTR ID2RequestReGetBlobPtr;
-NLM_EXTERN ID2RequestReGetTSEPtr LIBCALL ID2RequestReGetTSEFree PROTO ((ID2RequestReGetTSEPtr ));
-NLM_EXTERN ID2RequestReGetTSEPtr LIBCALL ID2RequestReGetTSENew PROTO (( void ));
-NLM_EXTERN ID2RequestReGetTSEPtr LIBCALL ID2RequestReGetTSEAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2RequestReGetTSEAsnWrite PROTO (( ID2RequestReGetTSEPtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2RequestReGetBlobPtr LIBCALL ID2RequestReGetBlobFree PROTO ((ID2RequestReGetBlobPtr ));
+NLM_EXTERN ID2RequestReGetBlobPtr LIBCALL ID2RequestReGetBlobNew PROTO (( void ));
+NLM_EXTERN ID2RequestReGetBlobPtr LIBCALL ID2RequestReGetBlobAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2RequestReGetBlobAsnWrite PROTO (( ID2RequestReGetBlobPtr , AsnIoPtr, AsnTypePtr));
@@ -289,7 +252,7 @@ NLM_EXTERN Boolean LIBCALL ID2RequestReGetTSEAsnWrite PROTO (( ID2RequestReGetTS
*
**************************************************/
typedef struct struct_ID2S_Request_Get_Chunks {
- struct struct_ID2_TSE_Id PNTR tse_id;
+ struct struct_ID2_Blob_Id PNTR blob_id;
ValNodePtr chunks;
} ID2SRequestGetChunks, PNTR ID2SRequestGetChunksPtr;
@@ -299,33 +262,45 @@ NLM_EXTERN ID2SRequestGetChunksPtr LIBCALL ID2SRequestGetChunksNew PROTO (( void
NLM_EXTERN ID2SRequestGetChunksPtr LIBCALL ID2SRequestGetChunksAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SRequestGetChunksAsnWrite PROTO (( ID2SRequestGetChunksPtr , AsnIoPtr, AsnTypePtr));
+typedef ValNodePtr ID2SeqIdPtr;
+typedef ValNode ID2SeqId;
+#define ID2SeqId_string 1
+#define ID2SeqId_seq_id 2
+
+
+NLM_EXTERN ID2SeqIdPtr LIBCALL ID2SeqIdFree PROTO ((ID2SeqIdPtr ));
+NLM_EXTERN ID2SeqIdPtr LIBCALL ID2SeqIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SeqIdAsnWrite PROTO (( ID2SeqIdPtr , AsnIoPtr, AsnTypePtr));
+
/**************************************************
*
-* ID2TSEId
+* ID2BlobId
*
**************************************************/
-typedef struct struct_ID2_TSE_Id {
- struct struct_ID2_TSE_Id PNTR next;
+typedef struct struct_ID2_Blob_Id {
+ struct struct_ID2_Blob_Id PNTR next;
Int4 sat;
+ Int4 sub_sat;
Int4 sat_key;
-} ID2TSEId, PNTR ID2TSEIdPtr;
+ Int4 version;
+} ID2BlobId, PNTR ID2BlobIdPtr;
-NLM_EXTERN ID2TSEIdPtr LIBCALL ID2TSEIdFree PROTO ((ID2TSEIdPtr ));
-NLM_EXTERN ID2TSEIdPtr LIBCALL ID2TSEIdNew PROTO (( void ));
-NLM_EXTERN ID2TSEIdPtr LIBCALL ID2TSEIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2TSEIdAsnWrite PROTO (( ID2TSEIdPtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2BlobIdPtr LIBCALL ID2BlobIdFree PROTO ((ID2BlobIdPtr ));
+NLM_EXTERN ID2BlobIdPtr LIBCALL ID2BlobIdNew PROTO (( void ));
+NLM_EXTERN ID2BlobIdPtr LIBCALL ID2BlobIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2BlobIdAsnWrite PROTO (( ID2BlobIdPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
-* ID2GetTSEDetails
+* ID2GetBlobDetails
*
**************************************************/
-typedef struct struct_ID2_Get_TSE_Details {
+typedef struct struct_ID2_Get_Blob_Details {
ValNodePtr location;
Int4 seq_class_level;
Int4 descr_level;
@@ -334,30 +309,17 @@ typedef struct struct_ID2_Get_TSE_Details {
Int4 feat_type_mask;
Uint2 sequence_level;
/* following #defines are for enumerated type, not used by object loaders */
-#define ID2_Get_TSE_Details_sequence_level_none 0
-#define ID2_Get_TSE_Details_sequence_level_seq_map 1
-#define ID2_Get_TSE_Details_sequence_level_seq_data 2
-
-} ID2GetTSEDetails, PNTR ID2GetTSEDetailsPtr;
-
+#define ID2_Get_Blob_Details_sequence_level_none 0
+#define ID2_Get_Blob_Details_sequence_level_seq_map 1
+#define ID2_Get_Blob_Details_sequence_level_seq_data 2
-NLM_EXTERN ID2GetTSEDetailsPtr LIBCALL ID2GetTSEDetailsFree PROTO ((ID2GetTSEDetailsPtr ));
-NLM_EXTERN ID2GetTSEDetailsPtr LIBCALL ID2GetTSEDetailsNew PROTO (( void ));
-NLM_EXTERN ID2GetTSEDetailsPtr LIBCALL ID2GetTSEDetailsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2GetTSEDetailsAsnWrite PROTO (( ID2GetTSEDetailsPtr , AsnIoPtr, AsnTypePtr));
+} ID2GetBlobDetails, PNTR ID2GetBlobDetailsPtr;
-typedef ValNodePtr ID2SeqLocPtr;
-typedef ValNode ID2SeqLoc;
-#define ID2SeqLoc_whole 1
-#define ID2SeqLoc_int__ 2
-#define ID2SeqLoc_int_set 3
-#define ID2SeqLoc_whole_range 4
-#define ID2SeqLoc_loc_set 5
-
-NLM_EXTERN ID2SeqLocPtr LIBCALL ID2SeqLocFree PROTO ((ID2SeqLocPtr ));
-NLM_EXTERN ID2SeqLocPtr LIBCALL ID2SeqLocAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SeqLocAsnWrite PROTO (( ID2SeqLocPtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2GetBlobDetailsPtr LIBCALL ID2GetBlobDetailsFree PROTO ((ID2GetBlobDetailsPtr ));
+NLM_EXTERN ID2GetBlobDetailsPtr LIBCALL ID2GetBlobDetailsNew PROTO (( void ));
+NLM_EXTERN ID2GetBlobDetailsPtr LIBCALL ID2GetBlobDetailsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2GetBlobDetailsAsnWrite PROTO (( ID2GetBlobDetailsPtr , AsnIoPtr, AsnTypePtr));
@@ -369,9 +331,9 @@ NLM_EXTERN Boolean LIBCALL ID2SeqLocAsnWrite PROTO (( ID2SeqLocPtr , AsnIoPtr, A
typedef struct struct_ID2_Reply {
Int4 serial_number;
struct struct_ID2_Param PNTR params;
- ValNodePtr Reply_reply;
struct struct_ID2_Error PNTR error;
Uint1 end_of_reply;
+ ValNodePtr Reply_reply;
} ID2Reply, PNTR ID2ReplyPtr;
@@ -389,12 +351,15 @@ typedef ValNode Reply_reply;
#endif /* NLM_GENERATED_CODE_PROTO */
#define Reply_reply_init 1
-#define Reply_reply_get_package 2
-#define Reply_reply_seq_id_to_gi 3
-#define Reply_reply_gi_to_tse_id 4
-#define Reply_reply_get_tse 5
-#define Reply_reply_get_tse_info 6
-#define Reply_reply_get_chunk 7
+#define Reply_reply_empty 2
+#define Reply_reply_get_package 3
+#define Reply_reply_get_seq_id 4
+#define Reply_reply_get_blob_id 5
+#define Reply_reply_get_blob_seq_ids 6
+#define Reply_reply_get_blob 7
+#define Reply_reply_reget_blob 8
+#define Reply_reply_get_split_info 9
+#define Reply_reply_get_chunk 10
#ifdef NLM_GENERATED_CODE_PROTO
@@ -408,117 +373,6 @@ static Boolean LIBCALL Reply_replyAsnWrite PROTO (( Reply_replyPtr , AsnIoPtr, A
/**************************************************
*
-* ID2ReplyGetPackage
-*
-**************************************************/
-typedef struct struct_ID2_Reply_Get_Package {
- CharPtr name;
- struct struct_ID2_Param PNTR params;
-} ID2ReplyGetPackage, PNTR ID2ReplyGetPackagePtr;
-
-
-NLM_EXTERN ID2ReplyGetPackagePtr LIBCALL ID2ReplyGetPackageFree PROTO ((ID2ReplyGetPackagePtr ));
-NLM_EXTERN ID2ReplyGetPackagePtr LIBCALL ID2ReplyGetPackageNew PROTO (( void ));
-NLM_EXTERN ID2ReplyGetPackagePtr LIBCALL ID2ReplyGetPackageAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2ReplyGetPackageAsnWrite PROTO (( ID2ReplyGetPackagePtr , AsnIoPtr, AsnTypePtr));
-
-
-
-/**************************************************
-*
-* ID2ReplySeqIdToGi
-*
-**************************************************/
-typedef struct struct_ID2_Reply_Seq_id_To_Gi {
- ValNodePtr seq_id;
- Int4 gi;
-} ID2ReplySeqIdToGi, PNTR ID2ReplySeqIdToGiPtr;
-
-
-NLM_EXTERN ID2ReplySeqIdToGiPtr LIBCALL ID2ReplySeqIdToGiFree PROTO ((ID2ReplySeqIdToGiPtr ));
-NLM_EXTERN ID2ReplySeqIdToGiPtr LIBCALL ID2ReplySeqIdToGiNew PROTO (( void ));
-NLM_EXTERN ID2ReplySeqIdToGiPtr LIBCALL ID2ReplySeqIdToGiAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2ReplySeqIdToGiAsnWrite PROTO (( ID2ReplySeqIdToGiPtr , AsnIoPtr, AsnTypePtr));
-
-
-
-/**************************************************
-*
-* ID2ReplyGiToTSEId
-*
-**************************************************/
-typedef struct struct_ID2_Reply_Gi_To_TSE_Id {
- Int4 gi;
- CharPtr source;
- struct struct_ID2_TSE_Id_Info PNTR tses;
-} ID2ReplyGiToTSEId, PNTR ID2ReplyGiToTSEIdPtr;
-
-
-NLM_EXTERN ID2ReplyGiToTSEIdPtr LIBCALL ID2ReplyGiToTSEIdFree PROTO ((ID2ReplyGiToTSEIdPtr ));
-NLM_EXTERN ID2ReplyGiToTSEIdPtr LIBCALL ID2ReplyGiToTSEIdNew PROTO (( void ));
-NLM_EXTERN ID2ReplyGiToTSEIdPtr LIBCALL ID2ReplyGiToTSEIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2ReplyGiToTSEIdAsnWrite PROTO (( ID2ReplyGiToTSEIdPtr , AsnIoPtr, AsnTypePtr));
-
-
-
-/**************************************************
-*
-* ID2ReplyGetTSE
-*
-**************************************************/
-typedef struct struct_ID2_Reply_Get_TSE {
- struct struct_ID2_TSE_Id PNTR tse_id;
- struct struct_ID2_Reply_Data PNTR data;
-} ID2ReplyGetTSE, PNTR ID2ReplyGetTSEPtr;
-
-
-NLM_EXTERN ID2ReplyGetTSEPtr LIBCALL ID2ReplyGetTSEFree PROTO ((ID2ReplyGetTSEPtr ));
-NLM_EXTERN ID2ReplyGetTSEPtr LIBCALL ID2ReplyGetTSENew PROTO (( void ));
-NLM_EXTERN ID2ReplyGetTSEPtr LIBCALL ID2ReplyGetTSEAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2ReplyGetTSEAsnWrite PROTO (( ID2ReplyGetTSEPtr , AsnIoPtr, AsnTypePtr));
-
-
-
-/**************************************************
-*
-* ID2SReplyGetTSEInfo
-*
-**************************************************/
-typedef struct struct_ID2S_Reply_Get_TSE_Info {
- struct struct_ID2_TSE_Id PNTR tse_id;
- Int4 split_version;
- struct struct_ID2_Reply_Data PNTR info;
-} ID2SReplyGetTSEInfo, PNTR ID2SReplyGetTSEInfoPtr;
-
-
-NLM_EXTERN ID2SReplyGetTSEInfoPtr LIBCALL ID2SReplyGetTSEInfoFree PROTO ((ID2SReplyGetTSEInfoPtr ));
-NLM_EXTERN ID2SReplyGetTSEInfoPtr LIBCALL ID2SReplyGetTSEInfoNew PROTO (( void ));
-NLM_EXTERN ID2SReplyGetTSEInfoPtr LIBCALL ID2SReplyGetTSEInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SReplyGetTSEInfoAsnWrite PROTO (( ID2SReplyGetTSEInfoPtr , AsnIoPtr, AsnTypePtr));
-
-
-
-/**************************************************
-*
-* ID2SReplyGetChunk
-*
-**************************************************/
-typedef struct struct_ID2S_Reply_Get_Chunk {
- struct struct_ID2_TSE_Id PNTR tse_id;
- Int4 chunk_id;
- struct struct_ID2_Reply_Data PNTR data;
-} ID2SReplyGetChunk, PNTR ID2SReplyGetChunkPtr;
-
-
-NLM_EXTERN ID2SReplyGetChunkPtr LIBCALL ID2SReplyGetChunkFree PROTO ((ID2SReplyGetChunkPtr ));
-NLM_EXTERN ID2SReplyGetChunkPtr LIBCALL ID2SReplyGetChunkNew PROTO (( void ));
-NLM_EXTERN ID2SReplyGetChunkPtr LIBCALL ID2SReplyGetChunkAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SReplyGetChunkAsnWrite PROTO (( ID2SReplyGetChunkPtr , AsnIoPtr, AsnTypePtr));
-
-
-
-/**************************************************
-*
* ID2Error
*
**************************************************/
@@ -549,325 +403,190 @@ NLM_EXTERN Boolean LIBCALL ID2ErrorAsnWrite PROTO (( ID2ErrorPtr , AsnIoPtr, Asn
/**************************************************
*
-* ID2TSEIdInfo
-*
-**************************************************/
-typedef struct struct_ID2_TSE_Id_Info {
- struct struct_ID2_TSE_Id_Info PNTR next;
- struct struct_ID2_TSE_Id PNTR tse_id;
- Int4 split_version;
-} ID2TSEIdInfo, PNTR ID2TSEIdInfoPtr;
-
-
-NLM_EXTERN ID2TSEIdInfoPtr LIBCALL ID2TSEIdInfoFree PROTO ((ID2TSEIdInfoPtr ));
-NLM_EXTERN ID2TSEIdInfoPtr LIBCALL ID2TSEIdInfoNew PROTO (( void ));
-NLM_EXTERN ID2TSEIdInfoPtr LIBCALL ID2TSEIdInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2TSEIdInfoAsnWrite PROTO (( ID2TSEIdInfoPtr , AsnIoPtr, AsnTypePtr));
-
-
-
-/**************************************************
-*
-* ID2ReplyData
-*
-**************************************************/
-typedef struct struct_ID2_Reply_Data {
- Int4 data_type;
- Int4 data_format;
- Int4 data_compression;
- ValNodePtr data;
-} ID2ReplyData, PNTR ID2ReplyDataPtr;
-
-
-NLM_EXTERN ID2ReplyDataPtr LIBCALL ID2ReplyDataFree PROTO ((ID2ReplyDataPtr ));
-NLM_EXTERN ID2ReplyDataPtr LIBCALL ID2ReplyDataNew PROTO (( void ));
-NLM_EXTERN ID2ReplyDataPtr LIBCALL ID2ReplyDataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2ReplyDataAsnWrite PROTO (( ID2ReplyDataPtr , AsnIoPtr, AsnTypePtr));
-
-
-
-/**************************************************
-*
-* ID2SSplitInfo
-*
-**************************************************/
-typedef struct struct_ID2S_Split_Info {
- struct struct_ID2S_Bioseqs_Info PNTR bioseqs_info;
- struct struct_ID2S_Chunk_Info PNTR chunks;
-} ID2SSplitInfo, PNTR ID2SSplitInfoPtr;
-
-
-NLM_EXTERN ID2SSplitInfoPtr LIBCALL ID2SSplitInfoFree PROTO ((ID2SSplitInfoPtr ));
-NLM_EXTERN ID2SSplitInfoPtr LIBCALL ID2SSplitInfoNew PROTO (( void ));
-NLM_EXTERN ID2SSplitInfoPtr LIBCALL ID2SSplitInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SSplitInfoAsnWrite PROTO (( ID2SSplitInfoPtr , AsnIoPtr, AsnTypePtr));
-
-
-
-/**************************************************
-*
-* ID2SBioseqsInfo
-*
-**************************************************/
-typedef struct struct_ID2S_Bioseqs_Info {
- struct struct_ID2S_Bioseqs_Info PNTR next;
- struct struct_ID2S_Bioseq_Info PNTR info;
- struct struct_ID2_Id_Range PNTR bioseqs;
-} ID2SBioseqsInfo, PNTR ID2SBioseqsInfoPtr;
-
-
-NLM_EXTERN ID2SBioseqsInfoPtr LIBCALL ID2SBioseqsInfoFree PROTO ((ID2SBioseqsInfoPtr ));
-NLM_EXTERN ID2SBioseqsInfoPtr LIBCALL ID2SBioseqsInfoNew PROTO (( void ));
-NLM_EXTERN ID2SBioseqsInfoPtr LIBCALL ID2SBioseqsInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SBioseqsInfoAsnWrite PROTO (( ID2SBioseqsInfoPtr , AsnIoPtr, AsnTypePtr));
-
-
-
-/**************************************************
-*
-* ID2SChunkInfo
+* ID2ReplyGetPackage
*
**************************************************/
-typedef struct struct_ID2S_Chunk_Info {
- struct struct_ID2S_Chunk_Info PNTR next;
- Int4 id;
- ValNodePtr content;
-} ID2SChunkInfo, PNTR ID2SChunkInfoPtr;
+typedef struct struct_ID2_Reply_Get_Package {
+ CharPtr name;
+ struct struct_ID2_Param PNTR params;
+} ID2ReplyGetPackage, PNTR ID2ReplyGetPackagePtr;
-NLM_EXTERN ID2SChunkInfoPtr LIBCALL ID2SChunkInfoFree PROTO ((ID2SChunkInfoPtr ));
-NLM_EXTERN ID2SChunkInfoPtr LIBCALL ID2SChunkInfoNew PROTO (( void ));
-NLM_EXTERN ID2SChunkInfoPtr LIBCALL ID2SChunkInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SChunkInfoAsnWrite PROTO (( ID2SChunkInfoPtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2ReplyGetPackagePtr LIBCALL ID2ReplyGetPackageFree PROTO ((ID2ReplyGetPackagePtr ));
+NLM_EXTERN ID2ReplyGetPackagePtr LIBCALL ID2ReplyGetPackageNew PROTO (( void ));
+NLM_EXTERN ID2ReplyGetPackagePtr LIBCALL ID2ReplyGetPackageAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2ReplyGetPackageAsnWrite PROTO (( ID2ReplyGetPackagePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
-* ID2SBioseqInfo
+* ID2ReplyGetSeqId
*
**************************************************/
-typedef struct struct_ID2S_Bioseq_Info {
- Int4 gap_count;
- Uint1 seq_map_has_ref;
- struct struct_ID2S_Sequence_Split_Info PNTR sequence_split;
-} ID2SBioseqInfo, PNTR ID2SBioseqInfoPtr;
+typedef struct struct_ID2_Reply_Get_Seq_id {
+ struct struct_ID2_Request_Get_Seq_id PNTR request;
+ ValNodePtr seq_id;
+} ID2ReplyGetSeqId, PNTR ID2ReplyGetSeqIdPtr;
-NLM_EXTERN ID2SBioseqInfoPtr LIBCALL ID2SBioseqInfoFree PROTO ((ID2SBioseqInfoPtr ));
-NLM_EXTERN ID2SBioseqInfoPtr LIBCALL ID2SBioseqInfoNew PROTO (( void ));
-NLM_EXTERN ID2SBioseqInfoPtr LIBCALL ID2SBioseqInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SBioseqInfoAsnWrite PROTO (( ID2SBioseqInfoPtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2ReplyGetSeqIdPtr LIBCALL ID2ReplyGetSeqIdFree PROTO ((ID2ReplyGetSeqIdPtr ));
+NLM_EXTERN ID2ReplyGetSeqIdPtr LIBCALL ID2ReplyGetSeqIdNew PROTO (( void ));
+NLM_EXTERN ID2ReplyGetSeqIdPtr LIBCALL ID2ReplyGetSeqIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2ReplyGetSeqIdAsnWrite PROTO (( ID2ReplyGetSeqIdPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
-* ID2IdRange
+* ID2ReplyGetBlobId
*
**************************************************/
-typedef struct struct_ID2_Id_Range {
- struct struct_ID2_Id_Range PNTR next;
- Int4 start;
- Int4 count;
-} ID2IdRange, PNTR ID2IdRangePtr;
+typedef struct struct_ID2_Reply_Get_Blob_Id {
+ ValNodePtr seq_id;
+ struct struct_ID2_Blob_Id PNTR blob_id;
+ Int4 split_version;
+ struct struct_ID2S_Seq_annot_Info PNTR annot_info;
+} ID2ReplyGetBlobId, PNTR ID2ReplyGetBlobIdPtr;
-NLM_EXTERN ID2IdRangePtr LIBCALL ID2IdRangeFree PROTO ((ID2IdRangePtr ));
-NLM_EXTERN ID2IdRangePtr LIBCALL ID2IdRangeNew PROTO (( void ));
-NLM_EXTERN ID2IdRangePtr LIBCALL ID2IdRangeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2IdRangeAsnWrite PROTO (( ID2IdRangePtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2ReplyGetBlobIdPtr LIBCALL ID2ReplyGetBlobIdFree PROTO ((ID2ReplyGetBlobIdPtr ));
+NLM_EXTERN ID2ReplyGetBlobIdPtr LIBCALL ID2ReplyGetBlobIdNew PROTO (( void ));
+NLM_EXTERN ID2ReplyGetBlobIdPtr LIBCALL ID2ReplyGetBlobIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2ReplyGetBlobIdAsnWrite PROTO (( ID2ReplyGetBlobIdPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
-* ID2SSequenceSplitInfo
+* ID2ReplyGetBlobSeqIds
*
**************************************************/
-typedef struct struct_ID2S_Sequence_Split_Info {
- Int4 block_size;
- Int4 chunk_start;
- ValNodePtr chunk_blocks;
-} ID2SSequenceSplitInfo, PNTR ID2SSequenceSplitInfoPtr;
-
-
-NLM_EXTERN ID2SSequenceSplitInfoPtr LIBCALL ID2SSequenceSplitInfoFree PROTO ((ID2SSequenceSplitInfoPtr ));
-NLM_EXTERN ID2SSequenceSplitInfoPtr LIBCALL ID2SSequenceSplitInfoNew PROTO (( void ));
-NLM_EXTERN ID2SSequenceSplitInfoPtr LIBCALL ID2SSequenceSplitInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SSequenceSplitInfoAsnWrite PROTO (( ID2SSequenceSplitInfoPtr , AsnIoPtr, AsnTypePtr));
+typedef struct struct_ID2_Reply_Get_Blob_Seq_ids {
+ struct struct_ID2_Blob_Id PNTR blob_id;
+ struct struct_ID2_Reply_Data PNTR ids;
+} ID2ReplyGetBlobSeqIds, PNTR ID2ReplyGetBlobSeqIdsPtr;
-typedef ValNodePtr ID2SChunkContentPtr;
-typedef ValNode ID2SChunkContent;
-#define ID2SChunkContent_seq_descr 1
-#define ID2SChunkContent_seq_annot 2
-#define ID2SChunkContent_seq_assembly 3
-#define ID2SChunkContent_seq_map 4
-#define ID2SChunkContent_seq_data 5
-
-NLM_EXTERN ID2SChunkContentPtr LIBCALL ID2SChunkContentFree PROTO ((ID2SChunkContentPtr ));
-NLM_EXTERN ID2SChunkContentPtr LIBCALL ID2SChunkContentAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SChunkContentAsnWrite PROTO (( ID2SChunkContentPtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2ReplyGetBlobSeqIdsPtr LIBCALL ID2ReplyGetBlobSeqIdsFree PROTO ((ID2ReplyGetBlobSeqIdsPtr ));
+NLM_EXTERN ID2ReplyGetBlobSeqIdsPtr LIBCALL ID2ReplyGetBlobSeqIdsNew PROTO (( void ));
+NLM_EXTERN ID2ReplyGetBlobSeqIdsPtr LIBCALL ID2ReplyGetBlobSeqIdsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2ReplyGetBlobSeqIdsAsnWrite PROTO (( ID2ReplyGetBlobSeqIdsPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
-* ID2SSeqDescrInfo
+* ID2ReplyGetBlob
*
**************************************************/
-typedef struct struct_ID2S_Seq_descr_Info {
- Int4 type_mask;
- struct struct_ID2_Id_Range PNTR bioseqs;
- struct struct_ID2_Id_Range PNTR bioseq_sets;
-} ID2SSeqDescrInfo, PNTR ID2SSeqDescrInfoPtr;
+typedef struct struct_ID2_Reply_Get_Blob {
+ struct struct_ID2_Blob_Id PNTR blob_id;
+ Int4 split_version;
+ struct struct_ID2_Reply_Data PNTR data;
+} ID2ReplyGetBlob, PNTR ID2ReplyGetBlobPtr;
-NLM_EXTERN ID2SSeqDescrInfoPtr LIBCALL ID2SSeqDescrInfoFree PROTO ((ID2SSeqDescrInfoPtr ));
-NLM_EXTERN ID2SSeqDescrInfoPtr LIBCALL ID2SSeqDescrInfoNew PROTO (( void ));
-NLM_EXTERN ID2SSeqDescrInfoPtr LIBCALL ID2SSeqDescrInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SSeqDescrInfoAsnWrite PROTO (( ID2SSeqDescrInfoPtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2ReplyGetBlobPtr LIBCALL ID2ReplyGetBlobFree PROTO ((ID2ReplyGetBlobPtr ));
+NLM_EXTERN ID2ReplyGetBlobPtr LIBCALL ID2ReplyGetBlobNew PROTO (( void ));
+NLM_EXTERN ID2ReplyGetBlobPtr LIBCALL ID2ReplyGetBlobAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2ReplyGetBlobAsnWrite PROTO (( ID2ReplyGetBlobPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
-* ID2SSeqAnnotInfo
+* ID2ReplyReGetBlob
*
**************************************************/
-typedef struct struct_ID2S_Seq_annot_Info {
- CharPtr name;
- Uint1 align;
- Uint1 graph;
- struct struct_ID2S_Feat_type_Info PNTR feat;
- ValNodePtr seq_loc;
-} ID2SSeqAnnotInfo, PNTR ID2SSeqAnnotInfoPtr;
+typedef struct struct_ID2_Reply_ReGet_Blob {
+ struct struct_ID2_Blob_Id PNTR blob_id;
+ Int4 split_version;
+ Int4 offset;
+ struct struct_ID2_Reply_Data PNTR data;
+} ID2ReplyReGetBlob, PNTR ID2ReplyReGetBlobPtr;
-NLM_EXTERN ID2SSeqAnnotInfoPtr LIBCALL ID2SSeqAnnotInfoFree PROTO ((ID2SSeqAnnotInfoPtr ));
-NLM_EXTERN ID2SSeqAnnotInfoPtr LIBCALL ID2SSeqAnnotInfoNew PROTO (( void ));
-NLM_EXTERN ID2SSeqAnnotInfoPtr LIBCALL ID2SSeqAnnotInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SSeqAnnotInfoAsnWrite PROTO (( ID2SSeqAnnotInfoPtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2ReplyReGetBlobPtr LIBCALL ID2ReplyReGetBlobFree PROTO ((ID2ReplyReGetBlobPtr ));
+NLM_EXTERN ID2ReplyReGetBlobPtr LIBCALL ID2ReplyReGetBlobNew PROTO (( void ));
+NLM_EXTERN ID2ReplyReGetBlobPtr LIBCALL ID2ReplyReGetBlobAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2ReplyReGetBlobAsnWrite PROTO (( ID2ReplyReGetBlobPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
-* ID2SSeqAssemblyInfo
+* ID2SReplyGetSplitInfo
*
**************************************************/
-typedef struct struct_ID2S_Seq_assembly_Info {
- struct struct_ID2_Id_Range PNTR bioseqs;
-} ID2SSeqAssemblyInfo, PNTR ID2SSeqAssemblyInfoPtr;
-
-
-NLM_EXTERN ID2SSeqAssemblyInfoPtr LIBCALL ID2SSeqAssemblyInfoFree PROTO ((ID2SSeqAssemblyInfoPtr ));
-NLM_EXTERN ID2SSeqAssemblyInfoPtr LIBCALL ID2SSeqAssemblyInfoNew PROTO (( void ));
-NLM_EXTERN ID2SSeqAssemblyInfoPtr LIBCALL ID2SSeqAssemblyInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SSeqAssemblyInfoAsnWrite PROTO (( ID2SSeqAssemblyInfoPtr , AsnIoPtr, AsnTypePtr));
-
+typedef struct struct_ID2S_Reply_Get_Split_Info {
+ struct struct_ID2_Blob_Id PNTR blob_id;
+ Int4 split_version;
+ struct struct_ID2_Reply_Data PNTR data;
+} ID2SReplyGetSplitInfo, PNTR ID2SReplyGetSplitInfoPtr;
-/**************************************************
-*
-* ID2SSeqMapInfo
-*
-**************************************************/
-#define ID2SSeqMapInfo ValNode
-#define ID2SSeqMapInfoPtr ValNodePtr
-#define ID2SSeqMapInfoFree ValNodeFree
-#define ID2SSeqMapInfoNew ValNodeNew
-#define ID2SSeqMapInfoAsnRead ValNodeAsnRead
-#define ID2SSeqMapInfoAsnWrite ValNodeAsnWrite
+NLM_EXTERN ID2SReplyGetSplitInfoPtr LIBCALL ID2SReplyGetSplitInfoFree PROTO ((ID2SReplyGetSplitInfoPtr ));
+NLM_EXTERN ID2SReplyGetSplitInfoPtr LIBCALL ID2SReplyGetSplitInfoNew PROTO (( void ));
+NLM_EXTERN ID2SReplyGetSplitInfoPtr LIBCALL ID2SReplyGetSplitInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SReplyGetSplitInfoAsnWrite PROTO (( ID2SReplyGetSplitInfoPtr , AsnIoPtr, AsnTypePtr));
-/**************************************************
-*
-* ID2SSeqDataInfo
-*
-**************************************************/
-#define ID2SSeqDataInfo ValNode
-#define ID2SSeqDataInfoPtr ValNodePtr
-#define ID2SSeqDataInfoFree ValNodeFree
-#define ID2SSeqDataInfoNew ValNodeNew
-#define ID2SSeqDataInfoAsnRead ValNodeAsnRead
-#define ID2SSeqDataInfoAsnWrite ValNodeAsnWrite
-
/**************************************************
*
-* ID2SFeatTypeInfo
+* ID2SReplyGetChunk
*
**************************************************/
-typedef struct struct_ID2S_Feat_type_Info {
- struct struct_ID2S_Feat_type_Info PNTR next;
- Int4 type;
- ValNodePtr subtypes;
-} ID2SFeatTypeInfo, PNTR ID2SFeatTypeInfoPtr;
+typedef struct struct_ID2S_Reply_Get_Chunk {
+ struct struct_ID2_Blob_Id PNTR blob_id;
+ Int4 chunk_id;
+ struct struct_ID2_Reply_Data PNTR data;
+} ID2SReplyGetChunk, PNTR ID2SReplyGetChunkPtr;
-NLM_EXTERN ID2SFeatTypeInfoPtr LIBCALL ID2SFeatTypeInfoFree PROTO ((ID2SFeatTypeInfoPtr ));
-NLM_EXTERN ID2SFeatTypeInfoPtr LIBCALL ID2SFeatTypeInfoNew PROTO (( void ));
-NLM_EXTERN ID2SFeatTypeInfoPtr LIBCALL ID2SFeatTypeInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SFeatTypeInfoAsnWrite PROTO (( ID2SFeatTypeInfoPtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2SReplyGetChunkPtr LIBCALL ID2SReplyGetChunkFree PROTO ((ID2SReplyGetChunkPtr ));
+NLM_EXTERN ID2SReplyGetChunkPtr LIBCALL ID2SReplyGetChunkNew PROTO (( void ));
+NLM_EXTERN ID2SReplyGetChunkPtr LIBCALL ID2SReplyGetChunkAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SReplyGetChunkAsnWrite PROTO (( ID2SReplyGetChunkPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
-* ID2SChunk
+* ID2ReplyData
*
**************************************************/
-typedef struct struct_ID2S_Chunk {
- struct struct_ID2S_Chunk_Data PNTR data;
-} ID2SChunk, PNTR ID2SChunkPtr;
+typedef struct struct_ID2_Reply_Data {
+ Int4 data_type;
+ Int4 data_format;
+ Int4 data_compression;
+ ValNodePtr data;
+} ID2ReplyData, PNTR ID2ReplyDataPtr;
-NLM_EXTERN ID2SChunkPtr LIBCALL ID2SChunkFree PROTO ((ID2SChunkPtr ));
-NLM_EXTERN ID2SChunkPtr LIBCALL ID2SChunkNew PROTO (( void ));
-NLM_EXTERN ID2SChunkPtr LIBCALL ID2SChunkAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SChunkAsnWrite PROTO (( ID2SChunkPtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2ReplyDataPtr LIBCALL ID2ReplyDataFree PROTO ((ID2ReplyDataPtr ));
+NLM_EXTERN ID2ReplyDataPtr LIBCALL ID2ReplyDataNew PROTO (( void ));
+NLM_EXTERN ID2ReplyDataPtr LIBCALL ID2ReplyDataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2ReplyDataAsnWrite PROTO (( ID2ReplyDataPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
-* ID2SChunkData
+* ID2BlobSeqIds
*
**************************************************/
-typedef struct struct_ID2S_Chunk_Data {
- struct struct_ID2S_Chunk_Data PNTR next;
- ValNodePtr Id_id;
- ValNodePtr descrs;
- struct struct_Seq_annot PNTR annots;
- struct struct_Seq_align PNTR assembly;
- struct struct_Seq_literal PNTR seq_map;
- struct struct_Seq_literal PNTR seq_data;
-} ID2SChunkData, PNTR ID2SChunkDataPtr;
-
-
-NLM_EXTERN ID2SChunkDataPtr LIBCALL ID2SChunkDataFree PROTO ((ID2SChunkDataPtr ));
-NLM_EXTERN ID2SChunkDataPtr LIBCALL ID2SChunkDataNew PROTO (( void ));
-NLM_EXTERN ID2SChunkDataPtr LIBCALL ID2SChunkDataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SChunkDataAsnWrite PROTO (( ID2SChunkDataPtr , AsnIoPtr, AsnTypePtr));
-
+typedef struct struct_ID2BlobSeqId ID2BlobSeqIds;
+typedef struct struct_ID2BlobSeqId PNTR ID2BlobSeqIdsPtr;
+#define ID2BlobSeqIdsNew() ID2BlobSeqIdNew()
#ifdef NLM_GENERATED_CODE_PROTO
-typedef ValNodePtr Id_idPtr;
-typedef ValNode Id_id;
-
-#endif /* NLM_GENERATED_CODE_PROTO */
-
-#define Id_id_bioseq_set 1
-#define Id_id_gi 2
-
-#ifdef NLM_GENERATED_CODE_PROTO
-
-static Id_idPtr LIBCALL Id_idFree PROTO ((Id_idPtr ));
-static Id_idPtr LIBCALL Id_idAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-static Boolean LIBCALL Id_idAsnWrite PROTO (( Id_idPtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2BlobSeqIdsPtr LIBCALL ID2BlobSeqIdsFree PROTO ((ID2BlobSeqIdsPtr ));
+NLM_EXTERN ID2BlobSeqIdsPtr LIBCALL ID2BlobSeqIdsNew PROTO (( void ));
+NLM_EXTERN ID2BlobSeqIdsPtr LIBCALL ID2BlobSeqIdsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2BlobSeqIdsAsnWrite PROTO (( ID2BlobSeqIdsPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
@@ -875,57 +594,20 @@ static Boolean LIBCALL Id_idAsnWrite PROTO (( Id_idPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
-* ID2Interval
+* ID2BlobSeqId
*
**************************************************/
-typedef struct struct_ID2_Interval {
- Int4 gi;
- Int4 start;
- Int4 length;
-} ID2Interval, PNTR ID2IntervalPtr;
-
-
-NLM_EXTERN ID2IntervalPtr LIBCALL ID2IntervalFree PROTO ((ID2IntervalPtr ));
-NLM_EXTERN ID2IntervalPtr LIBCALL ID2IntervalNew PROTO (( void ));
-NLM_EXTERN ID2IntervalPtr LIBCALL ID2IntervalAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2IntervalAsnWrite PROTO (( ID2IntervalPtr , AsnIoPtr, AsnTypePtr));
-
-
-
-/**************************************************
-*
-* ID2PackedSeqInts
-*
-**************************************************/
-typedef struct struct_ID2_Packed_Seq_ints {
- Int4 gi;
- struct struct_ID2_Seq_range PNTR ints;
-} ID2PackedSeqInts, PNTR ID2PackedSeqIntsPtr;
-
-
-NLM_EXTERN ID2PackedSeqIntsPtr LIBCALL ID2PackedSeqIntsFree PROTO ((ID2PackedSeqIntsPtr ));
-NLM_EXTERN ID2PackedSeqIntsPtr LIBCALL ID2PackedSeqIntsNew PROTO (( void ));
-NLM_EXTERN ID2PackedSeqIntsPtr LIBCALL ID2PackedSeqIntsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2PackedSeqIntsAsnWrite PROTO (( ID2PackedSeqIntsPtr , AsnIoPtr, AsnTypePtr));
-
-
-
-/**************************************************
-*
-* ID2SeqRange
-*
-**************************************************/
-typedef struct struct_ID2_Seq_range {
- struct struct_ID2_Seq_range PNTR next;
- Int4 start;
- Int4 length;
-} ID2SeqRange, PNTR ID2SeqRangePtr;
+typedef struct struct_ID2_Blob_Seq_id {
+ struct struct_ID2_Blob_Seq_id PNTR next;
+ ValNodePtr seq_id;
+ Uint1 replaced;
+} ID2BlobSeqId, PNTR ID2BlobSeqIdPtr;
-NLM_EXTERN ID2SeqRangePtr LIBCALL ID2SeqRangeFree PROTO ((ID2SeqRangePtr ));
-NLM_EXTERN ID2SeqRangePtr LIBCALL ID2SeqRangeNew PROTO (( void ));
-NLM_EXTERN ID2SeqRangePtr LIBCALL ID2SeqRangeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
-NLM_EXTERN Boolean LIBCALL ID2SeqRangeAsnWrite PROTO (( ID2SeqRangePtr , AsnIoPtr, AsnTypePtr));
+NLM_EXTERN ID2BlobSeqIdPtr LIBCALL ID2BlobSeqIdFree PROTO ((ID2BlobSeqIdPtr ));
+NLM_EXTERN ID2BlobSeqIdPtr LIBCALL ID2BlobSeqIdNew PROTO (( void ));
+NLM_EXTERN ID2BlobSeqIdPtr LIBCALL ID2BlobSeqIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2BlobSeqIdAsnWrite PROTO (( ID2BlobSeqIdPtr , AsnIoPtr, AsnTypePtr));
diff --git a/network/id2arch/id2map.h b/network/id2arch/id2map.h
index 937324db..98ef3926 100644
--- a/network/id2arch/id2map.h
+++ b/network/id2arch/id2map.h
@@ -1,10 +1,17 @@
+#ifndef __id2map_h__
+#define __id2map_h__
+
#include <objsset.h>
-#define NLM_EXTERN_LOADS {if (! SeqSetAsnLoad())return FALSE; \
- }
-#define struct_Seq_hist seqhist
+#define NLM_EXTERN_LOADS {if (! SeqSetAsnLoad())return FALSE; }
+
+#define struct_ID2Param struct_ID2_Param
+#define struct_ID2Request struct_ID2_Request
+#define blob_id_resolve_exclude_blobs_E id_resolve_exclude_blobs_E
+#define SeqLiteralFree SeqLitFree
#define SeqLiteralAsnRead SeqLitAsnRead
#define SeqLiteralAsnWrite SeqLitAsnWrite
-#define SeqLiteralFree SeqLitFree
-#define struct_ID2Param struct_ID2_Param
-#define ID2_SEQ_LOC_int__ ID2_SEQ_LOC_int
+
+#include <id2sgen.h>
+
+#endif
diff --git a/network/id2arch/id2sgen.c b/network/id2arch/id2sgen.c
new file mode 100644
index 00000000..c6c866df
--- /dev/null
+++ b/network/id2arch/id2sgen.c
@@ -0,0 +1,3345 @@
+#include <asn.h>
+
+#define NLM_GENERATED_CODE_PROTO
+
+#include <id2map.h>
+#include <id2sgen.h>
+
+static Boolean loaded = FALSE;
+
+#include <seqsplit.h>
+
+#ifndef NLM_EXTERN_LOADS
+#define NLM_EXTERN_LOADS {}
+#endif
+
+NLM_EXTERN Boolean LIBCALL
+id2sgenAsnLoad(void)
+{
+
+ if ( ! loaded) {
+ NLM_EXTERN_LOADS
+
+ if ( ! AsnLoad ())
+ return FALSE;
+ loaded = TRUE;
+ }
+
+ return TRUE;
+}
+
+
+
+/**************************************************
+* Generated object loaders for Module NCBI-Seq-split
+* Generated using ASNCODE Revision: 6.0 at May 3, 2004 6:18 PM
+*
+**************************************************/
+
+
+/**************************************************
+*
+* ID2SSeqAnnotInfoNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSeqAnnotInfoPtr LIBCALL
+ID2SSeqAnnotInfoNew(void)
+{
+ ID2SSeqAnnotInfoPtr ptr = MemNew((size_t) sizeof(ID2SSeqAnnotInfo));
+
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2SSeqAnnotInfoFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSeqAnnotInfoPtr LIBCALL
+ID2SSeqAnnotInfoFree(ID2SSeqAnnotInfoPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ MemFree(ptr -> name);
+ AsnGenericUserSeqOfFree(ptr -> feat, (AsnOptFreeFunc) ID2SFeatTypeInfoFree);
+ ID2SeqLocFree(ptr -> seq_loc);
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2SSeqAnnotInfoAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSeqAnnotInfoPtr LIBCALL
+ID2SSeqAnnotInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2SSeqAnnotInfoPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SSeqAnnotInfo ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_SEQ_ANNOT_INFO);
+ } else {
+ atp = AsnLinkType(orig, ID2S_SEQ_ANNOT_INFO);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2SSeqAnnotInfoNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2S_SEQ_ANNOT_INFO_name) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> name = av.ptrvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_SEQ_ANNOT_INFO_align) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> align = av.boolvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_SEQ_ANNOT_INFO_graph) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> graph = av.boolvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_SEQ_ANNOT_INFO_feat) {
+ ptr -> feat = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SFeatTypeInfoAsnRead, (AsnOptFreeFunc) ID2SFeatTypeInfoFree);
+ if (isError && ptr -> feat == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_SEQ_ANNOT_INFO_seq_loc) {
+ ptr -> seq_loc = ID2SeqLocAsnRead(aip, atp);
+ if (aip -> io_failure) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2SSeqAnnotInfoFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2SSeqAnnotInfoAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SSeqAnnotInfoAsnWrite(ID2SSeqAnnotInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2S_SEQ_ANNOT_INFO); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ if (ptr -> name != NULL) {
+ av.ptrvalue = ptr -> name;
+ retval = AsnWrite(aip, ID2S_SEQ_ANNOT_INFO_name, &av);
+ }
+ av.boolvalue = ptr -> align;
+ retval = AsnWrite(aip, ID2S_SEQ_ANNOT_INFO_align, &av);
+ av.boolvalue = ptr -> graph;
+ retval = AsnWrite(aip, ID2S_SEQ_ANNOT_INFO_graph, &av);
+ AsnGenericUserSeqOfAsnWrite(ptr -> feat, (AsnWriteFunc) ID2SFeatTypeInfoAsnWrite, aip, ID2S_SEQ_ANNOT_INFO_feat, ID2S_SEQ_ANNOT_INFO_feat_E);
+ if (ptr -> seq_loc != NULL) {
+ if ( ! ID2SeqLocAsnWrite(ptr -> seq_loc, aip, ID2S_SEQ_ANNOT_INFO_seq_loc)) {
+ goto erret;
+ }
+ }
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2SSplitInfoNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSplitInfoPtr LIBCALL
+ID2SSplitInfoNew(void)
+{
+ ID2SSplitInfoPtr ptr = MemNew((size_t) sizeof(ID2SSplitInfo));
+
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2SSplitInfoFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSplitInfoPtr LIBCALL
+ID2SSplitInfoFree(ID2SSplitInfoPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ AsnGenericUserSeqOfFree(ptr -> bioseqs_info, (AsnOptFreeFunc) ID2SBioseqsInfoFree);
+ AsnGenericUserSeqOfFree(ptr -> chunks, (AsnOptFreeFunc) ID2SChunkInfoFree);
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2SSplitInfoAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSplitInfoPtr LIBCALL
+ID2SSplitInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2SSplitInfoPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SSplitInfo ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_SPLIT_INFO);
+ } else {
+ atp = AsnLinkType(orig, ID2S_SPLIT_INFO);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2SSplitInfoNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2S_SPLIT_INFO_bioseqs_info) {
+ ptr -> bioseqs_info = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SBioseqsInfoAsnRead, (AsnOptFreeFunc) ID2SBioseqsInfoFree);
+ if (isError && ptr -> bioseqs_info == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_SPLIT_INFO_chunks) {
+ ptr -> chunks = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SChunkInfoAsnRead, (AsnOptFreeFunc) ID2SChunkInfoFree);
+ if (isError && ptr -> chunks == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2SSplitInfoFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2SSplitInfoAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SSplitInfoAsnWrite(ID2SSplitInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2S_SPLIT_INFO); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ AsnGenericUserSeqOfAsnWrite(ptr -> bioseqs_info, (AsnWriteFunc) ID2SBioseqsInfoAsnWrite, aip, ID2S_SPLIT_INFO_bioseqs_info, ID2S_SPLIT_INFO_bioseqs_info_E);
+ AsnGenericUserSeqOfAsnWrite(ptr -> chunks, (AsnWriteFunc) ID2SChunkInfoAsnWrite, aip, ID2S_SPLIT_INFO_chunks, ID2S_SPLIT_INFO_chunks_E);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2SBioseqsInfoNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2SBioseqsInfoPtr LIBCALL
+ID2SBioseqsInfoNew(void)
+{
+ ID2SBioseqsInfoPtr ptr = MemNew((size_t) sizeof(ID2SBioseqsInfo));
+
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2SBioseqsInfoFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SBioseqsInfoPtr LIBCALL
+ID2SBioseqsInfoFree(ID2SBioseqsInfoPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ ID2SBioseqInfoFree(ptr -> info);
+ ID2IdRangeFree(ptr -> bioseqs);
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2SBioseqsInfoAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SBioseqsInfoPtr LIBCALL
+ID2SBioseqsInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2SBioseqsInfoPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SBioseqsInfo ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_BIOSEQS_INFO);
+ } else {
+ atp = AsnLinkType(orig, ID2S_BIOSEQS_INFO);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2SBioseqsInfoNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2S_BIOSEQS_INFO_info) {
+ ptr -> info = ID2SBioseqInfoAsnRead(aip, atp);
+ if (aip -> io_failure) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_BIOSEQS_INFO_bioseqs) {
+ ptr -> bioseqs = ID2IdRangeAsnRead(aip, atp);
+ if (aip -> io_failure) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2SBioseqsInfoFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2SBioseqsInfoAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SBioseqsInfoAsnWrite(ID2SBioseqsInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2S_BIOSEQS_INFO); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ if (ptr -> info != NULL) {
+ if ( ! ID2SBioseqInfoAsnWrite(ptr -> info, aip, ID2S_BIOSEQS_INFO_info)) {
+ goto erret;
+ }
+ }
+ if (ptr -> bioseqs != NULL) {
+ if ( ! ID2IdRangeAsnWrite(ptr -> bioseqs, aip, ID2S_BIOSEQS_INFO_bioseqs)) {
+ goto erret;
+ }
+ }
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2SChunkInfoNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2SChunkInfoPtr LIBCALL
+ID2SChunkInfoNew(void)
+{
+ ID2SChunkInfoPtr ptr = MemNew((size_t) sizeof(ID2SChunkInfo));
+
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2SChunkInfoFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SChunkInfoPtr LIBCALL
+ID2SChunkInfoFree(ID2SChunkInfoPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ AsnGenericChoiceSeqOfFree(ptr -> content, (AsnOptFreeFunc) ID2SChunkContentFree);
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2SChunkInfoAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SChunkInfoPtr LIBCALL
+ID2SChunkInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2SChunkInfoPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SChunkInfo ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_CHUNK_INFO);
+ } else {
+ atp = AsnLinkType(orig, ID2S_CHUNK_INFO);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2SChunkInfoNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2S_CHUNK_INFO_id) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> id = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_CHUNK_INFO_content) {
+ ptr -> content = AsnGenericChoiceSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SChunkContentAsnRead, (AsnOptFreeFunc) ID2SChunkContentFree);
+ if (isError && ptr -> content == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2SChunkInfoFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2SChunkInfoAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SChunkInfoAsnWrite(ID2SChunkInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2S_CHUNK_INFO); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ av.intvalue = ptr -> id;
+ retval = AsnWrite(aip, ID2S_CHUNK_INFO_id, &av);
+ AsnGenericChoiceSeqOfAsnWrite(ptr -> content, (AsnWriteFunc) ID2SChunkContentAsnWrite, aip, ID2S_CHUNK_INFO_content, ID2S_CHUNK_INFO_content_E);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2SBioseqInfoNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2SBioseqInfoPtr LIBCALL
+ID2SBioseqInfoNew(void)
+{
+ ID2SBioseqInfoPtr ptr = MemNew((size_t) sizeof(ID2SBioseqInfo));
+
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2SBioseqInfoFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SBioseqInfoPtr LIBCALL
+ID2SBioseqInfoFree(ID2SBioseqInfoPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ ID2SSequenceSplitInfoFree(ptr -> sequence_split);
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2SBioseqInfoAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SBioseqInfoPtr LIBCALL
+ID2SBioseqInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2SBioseqInfoPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SBioseqInfo ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_BIOSEQ_INFO);
+ } else {
+ atp = AsnLinkType(orig, ID2S_BIOSEQ_INFO);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2SBioseqInfoNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2S_BIOSEQ_INFO_gap_count) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> gap_count = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == BIOSEQ_INFO_seq_map_has_ref) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> seq_map_has_ref = av.boolvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_BIOSEQ_INFO_sequence_split) {
+ ptr -> sequence_split = ID2SSequenceSplitInfoAsnRead(aip, atp);
+ if (aip -> io_failure) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2SBioseqInfoFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2SBioseqInfoAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SBioseqInfoAsnWrite(ID2SBioseqInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2S_BIOSEQ_INFO); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ av.intvalue = ptr -> gap_count;
+ retval = AsnWrite(aip, ID2S_BIOSEQ_INFO_gap_count, &av);
+ av.boolvalue = ptr -> seq_map_has_ref;
+ retval = AsnWrite(aip, BIOSEQ_INFO_seq_map_has_ref, &av);
+ if (ptr -> sequence_split != NULL) {
+ if ( ! ID2SSequenceSplitInfoAsnWrite(ptr -> sequence_split, aip, ID2S_BIOSEQ_INFO_sequence_split)) {
+ goto erret;
+ }
+ }
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2IdRangeNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2IdRangePtr LIBCALL
+ID2IdRangeNew(void)
+{
+ ID2IdRangePtr ptr = MemNew((size_t) sizeof(ID2IdRange));
+
+ ptr -> count = 1;
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2IdRangeFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2IdRangePtr LIBCALL
+ID2IdRangeFree(ID2IdRangePtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2IdRangeAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2IdRangePtr LIBCALL
+ID2IdRangeAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2IdRangePtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2IdRange ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_ID_RANGE);
+ } else {
+ atp = AsnLinkType(orig, ID2_ID_RANGE);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2IdRangeNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2_ID_RANGE_start) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> start = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2_ID_RANGE_count) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> count = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2IdRangeFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2IdRangeAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2IdRangeAsnWrite(ID2IdRangePtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2_ID_RANGE); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ av.intvalue = ptr -> start;
+ retval = AsnWrite(aip, ID2_ID_RANGE_start, &av);
+ av.intvalue = ptr -> count;
+ retval = AsnWrite(aip, ID2_ID_RANGE_count, &av);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2SSequenceSplitInfoNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSequenceSplitInfoPtr LIBCALL
+ID2SSequenceSplitInfoNew(void)
+{
+ ID2SSequenceSplitInfoPtr ptr = MemNew((size_t) sizeof(ID2SSequenceSplitInfo));
+
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2SSequenceSplitInfoFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSequenceSplitInfoPtr LIBCALL
+ID2SSequenceSplitInfoFree(ID2SSequenceSplitInfoPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ AsnGenericBaseSeqOfFree(ptr -> chunk_blocks ,ASNCODE_INTVAL_SLOT);
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2SSequenceSplitInfoAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSequenceSplitInfoPtr LIBCALL
+ID2SSequenceSplitInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2SSequenceSplitInfoPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SSequenceSplitInfo ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_SEQUENCE_SPLIT_INFO);
+ } else {
+ atp = AsnLinkType(orig, ID2S_SEQUENCE_SPLIT_INFO);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2SSequenceSplitInfoNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == SEQUENCE_SPLIT_INFO_block_size) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> block_size = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == SPLIT_INFO_chunk_start) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> chunk_start = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == SPLIT_INFO_chunk_blocks) {
+ ptr -> chunk_blocks = AsnGenericBaseSeqOfAsnRead(aip, amp, atp, ASNCODE_INTVAL_SLOT, &isError);
+ if (isError && ptr -> chunk_blocks == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2SSequenceSplitInfoFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2SSequenceSplitInfoAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SSequenceSplitInfoAsnWrite(ID2SSequenceSplitInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2S_SEQUENCE_SPLIT_INFO); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ av.intvalue = ptr -> block_size;
+ retval = AsnWrite(aip, SEQUENCE_SPLIT_INFO_block_size, &av);
+ av.intvalue = ptr -> chunk_start;
+ retval = AsnWrite(aip, SPLIT_INFO_chunk_start, &av);
+ retval = AsnGenericBaseSeqOfAsnWrite(ptr -> chunk_blocks ,ASNCODE_INTVAL_SLOT, aip, SPLIT_INFO_chunk_blocks, SPLIT_INFO_chunk_blocks_E);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2SChunkContentFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SChunkContentPtr LIBCALL
+ID2SChunkContentFree(ValNodePtr anp)
+{
+ Pointer pnt;
+
+ if (anp == NULL) {
+ return NULL;
+ }
+
+ pnt = anp->data.ptrvalue;
+ switch (anp->choice)
+ {
+ default:
+ break;
+ case ID2SChunkContent_seq_descr:
+ ID2SSeqDescrInfoFree(anp -> data.ptrvalue);
+ break;
+ case ID2SChunkContent_seq_annot:
+ ID2SSeqAnnotInfoFree(anp -> data.ptrvalue);
+ break;
+ case ID2SChunkContent_seq_assembly:
+ ID2SSeqAssemblyInfoFree(anp -> data.ptrvalue);
+ break;
+ case ID2SChunkContent_seq_map:
+ ID2SeqLocFree(anp -> data.ptrvalue);
+ break;
+ case ID2SChunkContent_seq_data:
+ ID2SeqLocFree(anp -> data.ptrvalue);
+ break;
+ case ID2SChunkContent_seq_annot_place:
+ ID2SSeqAnnotPlaceInfoFree(anp -> data.ptrvalue);
+ break;
+ }
+ return MemFree(anp);
+}
+
+
+/**************************************************
+*
+* ID2SChunkContentAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SChunkContentPtr LIBCALL
+ID2SChunkContentAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ ValNodePtr anp;
+ Uint1 choice;
+ Boolean isError = FALSE;
+ Boolean nullIsError = FALSE;
+ AsnReadFunc func;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SChunkContent ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_CHUNK_CONTENT);
+ } else {
+ atp = AsnLinkType(orig, ID2S_CHUNK_CONTENT); /* link in local tree */
+ }
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ anp = ValNodeNew(NULL);
+ if (anp == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the CHOICE or OpenStruct value (nothing) */
+ goto erret;
+ }
+
+ func = NULL;
+
+ atp = AsnReadId(aip, amp, atp); /* find the choice */
+ if (atp == NULL) {
+ goto erret;
+ }
+ if (atp == ID2S_CHUNK_CONTENT_seq_descr) {
+ choice = ID2SChunkContent_seq_descr;
+ func = (AsnReadFunc) ID2SSeqDescrInfoAsnRead;
+ }
+ else if (atp == ID2S_CHUNK_CONTENT_seq_annot) {
+ choice = ID2SChunkContent_seq_annot;
+ func = (AsnReadFunc) ID2SSeqAnnotInfoAsnRead;
+ }
+ else if (atp == ID2S_CHUNK_CONTENT_seq_assembly) {
+ choice = ID2SChunkContent_seq_assembly;
+ func = (AsnReadFunc) ID2SSeqAssemblyInfoAsnRead;
+ }
+ else if (atp == ID2S_CHUNK_CONTENT_seq_map) {
+ choice = ID2SChunkContent_seq_map;
+ func = (AsnReadFunc) ID2SeqLocAsnRead;
+ }
+ else if (atp == ID2S_CHUNK_CONTENT_seq_data) {
+ choice = ID2SChunkContent_seq_data;
+ func = (AsnReadFunc) ID2SeqLocAsnRead;
+ }
+ else if (atp == CHUNK_CONTENT_seq_annot_place) {
+ choice = ID2SChunkContent_seq_annot_place;
+ func = (AsnReadFunc) ID2SSeqAnnotPlaceInfoAsnRead;
+ }
+ anp->choice = choice;
+ if (func != NULL)
+ {
+ anp->data.ptrvalue = (* func)(aip, atp);
+ if (aip -> io_failure) goto erret;
+
+ if (nullIsError && anp->data.ptrvalue == NULL) {
+ goto erret;
+ }
+ }
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return anp;
+
+erret:
+ anp = MemFree(anp);
+ aip -> io_failure = TRUE;
+ goto ret;
+}
+
+
+/**************************************************
+*
+* ID2SChunkContentAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SChunkContentAsnWrite(ID2SChunkContentPtr anp, AsnIoPtr aip, AsnTypePtr orig)
+
+{
+ DataVal av;
+ AsnTypePtr atp, writetype = NULL;
+ Pointer pnt;
+ AsnWriteFunc func = NULL;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad())
+ return FALSE;
+ }
+
+ if (aip == NULL)
+ return FALSE;
+
+ atp = AsnLinkType(orig, ID2S_CHUNK_CONTENT); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+
+ av.ptrvalue = (Pointer)anp;
+ if (! AsnWriteChoice(aip, atp, (Int2)anp->choice, &av)) {
+ goto erret;
+ }
+
+ pnt = anp->data.ptrvalue;
+ switch (anp->choice)
+ {
+ case ID2SChunkContent_seq_descr:
+ writetype = ID2S_CHUNK_CONTENT_seq_descr;
+ func = (AsnWriteFunc) ID2SSeqDescrInfoAsnWrite;
+ break;
+ case ID2SChunkContent_seq_annot:
+ writetype = ID2S_CHUNK_CONTENT_seq_annot;
+ func = (AsnWriteFunc) ID2SSeqAnnotInfoAsnWrite;
+ break;
+ case ID2SChunkContent_seq_assembly:
+ writetype = ID2S_CHUNK_CONTENT_seq_assembly;
+ func = (AsnWriteFunc) ID2SSeqAssemblyInfoAsnWrite;
+ break;
+ case ID2SChunkContent_seq_map:
+ writetype = ID2S_CHUNK_CONTENT_seq_map;
+ func = (AsnWriteFunc) ID2SeqLocAsnWrite;
+ break;
+ case ID2SChunkContent_seq_data:
+ writetype = ID2S_CHUNK_CONTENT_seq_data;
+ func = (AsnWriteFunc) ID2SeqLocAsnWrite;
+ break;
+ case ID2SChunkContent_seq_annot_place:
+ writetype = CHUNK_CONTENT_seq_annot_place;
+ func = (AsnWriteFunc) ID2SSeqAnnotPlaceInfoAsnWrite;
+ break;
+ }
+ if (writetype != NULL) {
+ retval = (* func)(pnt, aip, writetype); /* write it out */
+ }
+ if (!retval) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+/**************************************************
+*
+* ID2SSeqDescrInfoNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSeqDescrInfoPtr LIBCALL
+ID2SSeqDescrInfoNew(void)
+{
+ ID2SSeqDescrInfoPtr ptr = MemNew((size_t) sizeof(ID2SSeqDescrInfo));
+
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2SSeqDescrInfoFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSeqDescrInfoPtr LIBCALL
+ID2SSeqDescrInfoFree(ID2SSeqDescrInfoPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ AsnGenericUserSeqOfFree(ptr -> bioseqs, (AsnOptFreeFunc) ID2IdRangeFree);
+ AsnGenericUserSeqOfFree(ptr -> bioseq_sets, (AsnOptFreeFunc) ID2IdRangeFree);
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2SSeqDescrInfoAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSeqDescrInfoPtr LIBCALL
+ID2SSeqDescrInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2SSeqDescrInfoPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SSeqDescrInfo ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_SEQ_DESCR_INFO);
+ } else {
+ atp = AsnLinkType(orig, ID2S_SEQ_DESCR_INFO);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2SSeqDescrInfoNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2S_SEQ_DESCR_INFO_type_mask) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> type_mask = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_SEQ_DESCR_INFO_bioseqs) {
+ ptr -> bioseqs = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2IdRangeAsnRead, (AsnOptFreeFunc) ID2IdRangeFree);
+ if (isError && ptr -> bioseqs == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_SEQ_DESCR_INFO_bioseq_sets) {
+ ptr -> bioseq_sets = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2IdRangeAsnRead, (AsnOptFreeFunc) ID2IdRangeFree);
+ if (isError && ptr -> bioseq_sets == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2SSeqDescrInfoFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2SSeqDescrInfoAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SSeqDescrInfoAsnWrite(ID2SSeqDescrInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2S_SEQ_DESCR_INFO); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ av.intvalue = ptr -> type_mask;
+ retval = AsnWrite(aip, ID2S_SEQ_DESCR_INFO_type_mask, &av);
+ AsnGenericUserSeqOfAsnWrite(ptr -> bioseqs, (AsnWriteFunc) ID2IdRangeAsnWrite, aip, ID2S_SEQ_DESCR_INFO_bioseqs, ID2S_SEQ_DESCR_INFO_bioseqs_E);
+ AsnGenericUserSeqOfAsnWrite(ptr -> bioseq_sets, (AsnWriteFunc) ID2IdRangeAsnWrite, aip, ID2S_SEQ_DESCR_INFO_bioseq_sets, SEQ_DESCR_INFO_bioseq_sets_E);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2SSeqAssemblyInfoNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSeqAssemblyInfoPtr LIBCALL
+ID2SSeqAssemblyInfoNew(void)
+{
+ ID2SSeqAssemblyInfoPtr ptr = MemNew((size_t) sizeof(ID2SSeqAssemblyInfo));
+
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2SSeqAssemblyInfoFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSeqAssemblyInfoPtr LIBCALL
+ID2SSeqAssemblyInfoFree(ID2SSeqAssemblyInfoPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ AsnGenericUserSeqOfFree(ptr -> bioseqs, (AsnOptFreeFunc) ID2IdRangeFree);
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2SSeqAssemblyInfoAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSeqAssemblyInfoPtr LIBCALL
+ID2SSeqAssemblyInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2SSeqAssemblyInfoPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SSeqAssemblyInfo ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_SEQ_ASSEMBLY_INFO);
+ } else {
+ atp = AsnLinkType(orig, ID2S_SEQ_ASSEMBLY_INFO);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2SSeqAssemblyInfoNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2S_SEQ_ASSEMBLY_INFO_bioseqs) {
+ ptr -> bioseqs = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2IdRangeAsnRead, (AsnOptFreeFunc) ID2IdRangeFree);
+ if (isError && ptr -> bioseqs == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2SSeqAssemblyInfoFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2SSeqAssemblyInfoAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SSeqAssemblyInfoAsnWrite(ID2SSeqAssemblyInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2S_SEQ_ASSEMBLY_INFO); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ AsnGenericUserSeqOfAsnWrite(ptr -> bioseqs, (AsnWriteFunc) ID2IdRangeAsnWrite, aip, ID2S_SEQ_ASSEMBLY_INFO_bioseqs, SEQ_ASSEMBLY_INFO_bioseqs_E);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2SSeqAnnotPlaceInfoNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSeqAnnotPlaceInfoPtr LIBCALL
+ID2SSeqAnnotPlaceInfoNew(void)
+{
+ ID2SSeqAnnotPlaceInfoPtr ptr = MemNew((size_t) sizeof(ID2SSeqAnnotPlaceInfo));
+
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2SSeqAnnotPlaceInfoFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSeqAnnotPlaceInfoPtr LIBCALL
+ID2SSeqAnnotPlaceInfoFree(ID2SSeqAnnotPlaceInfoPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ MemFree(ptr -> name);
+ AsnGenericUserSeqOfFree(ptr -> bioseqs, (AsnOptFreeFunc) ID2IdRangeFree);
+ AsnGenericUserSeqOfFree(ptr -> bioseq_sets, (AsnOptFreeFunc) ID2IdRangeFree);
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2SSeqAnnotPlaceInfoAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SSeqAnnotPlaceInfoPtr LIBCALL
+ID2SSeqAnnotPlaceInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2SSeqAnnotPlaceInfoPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SSeqAnnotPlaceInfo ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_SEQ_ANNOT_PLACE_INFO);
+ } else {
+ atp = AsnLinkType(orig, ID2S_SEQ_ANNOT_PLACE_INFO);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2SSeqAnnotPlaceInfoNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2S_SEQ_ANNOT_PLACE_INFO_name) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> name = av.ptrvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == SEQ_ANNOT_PLACE_INFO_bioseqs) {
+ ptr -> bioseqs = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2IdRangeAsnRead, (AsnOptFreeFunc) ID2IdRangeFree);
+ if (isError && ptr -> bioseqs == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ANNOT_PLACE_INFO_bioseq_sets) {
+ ptr -> bioseq_sets = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2IdRangeAsnRead, (AsnOptFreeFunc) ID2IdRangeFree);
+ if (isError && ptr -> bioseq_sets == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2SSeqAnnotPlaceInfoFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2SSeqAnnotPlaceInfoAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SSeqAnnotPlaceInfoAsnWrite(ID2SSeqAnnotPlaceInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2S_SEQ_ANNOT_PLACE_INFO); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ if (ptr -> name != NULL) {
+ av.ptrvalue = ptr -> name;
+ retval = AsnWrite(aip, ID2S_SEQ_ANNOT_PLACE_INFO_name, &av);
+ }
+ AsnGenericUserSeqOfAsnWrite(ptr -> bioseqs, (AsnWriteFunc) ID2IdRangeAsnWrite, aip, SEQ_ANNOT_PLACE_INFO_bioseqs, SEQ_ANNOT_PLACE_INFO_bioseqs_E);
+ AsnGenericUserSeqOfAsnWrite(ptr -> bioseq_sets, (AsnWriteFunc) ID2IdRangeAsnWrite, aip, ANNOT_PLACE_INFO_bioseq_sets, ANNOT_PLACE_INFO_bioseq_sets_E);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2SFeatTypeInfoNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2SFeatTypeInfoPtr LIBCALL
+ID2SFeatTypeInfoNew(void)
+{
+ ID2SFeatTypeInfoPtr ptr = MemNew((size_t) sizeof(ID2SFeatTypeInfo));
+
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2SFeatTypeInfoFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SFeatTypeInfoPtr LIBCALL
+ID2SFeatTypeInfoFree(ID2SFeatTypeInfoPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ AsnGenericBaseSeqOfFree(ptr -> subtypes ,ASNCODE_INTVAL_SLOT);
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2SFeatTypeInfoAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SFeatTypeInfoPtr LIBCALL
+ID2SFeatTypeInfoAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2SFeatTypeInfoPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SFeatTypeInfo ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_FEAT_TYPE_INFO);
+ } else {
+ atp = AsnLinkType(orig, ID2S_FEAT_TYPE_INFO);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2SFeatTypeInfoNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2S_FEAT_TYPE_INFO_type) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> type = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_FEAT_TYPE_INFO_subtypes) {
+ ptr -> subtypes = AsnGenericBaseSeqOfAsnRead(aip, amp, atp, ASNCODE_INTVAL_SLOT, &isError);
+ if (isError && ptr -> subtypes == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2SFeatTypeInfoFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2SFeatTypeInfoAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SFeatTypeInfoAsnWrite(ID2SFeatTypeInfoPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2S_FEAT_TYPE_INFO); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ av.intvalue = ptr -> type;
+ retval = AsnWrite(aip, ID2S_FEAT_TYPE_INFO_type, &av);
+ retval = AsnGenericBaseSeqOfAsnWrite(ptr -> subtypes ,ASNCODE_INTVAL_SLOT, aip, ID2S_FEAT_TYPE_INFO_subtypes, ID2S_FEAT_TYPE_INFO_subtypes_E);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2SeqLocFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SeqLocPtr LIBCALL
+ID2SeqLocFree(ValNodePtr anp)
+{
+ Pointer pnt;
+
+ if (anp == NULL) {
+ return NULL;
+ }
+
+ pnt = anp->data.ptrvalue;
+ switch (anp->choice)
+ {
+ default:
+ break;
+ case ID2SeqLoc_interval:
+ ID2IntervalFree(anp -> data.ptrvalue);
+ break;
+ case ID2SeqLoc_packed_ints:
+ ID2PackedSeqIntsFree(anp -> data.ptrvalue);
+ break;
+ case ID2SeqLoc_gi_whole_range:
+ ID2IdRangeFree(anp -> data.ptrvalue);
+ break;
+ case ID2SeqLoc_loc_set:
+ AsnGenericChoiceSeqOfFree((Pointer) pnt, (AsnOptFreeFunc) ID2SeqLocFree);
+ break;
+ case ID2SeqLoc_seq_loc:
+ SeqLocFree(anp -> data.ptrvalue);
+ break;
+ }
+ return MemFree(anp);
+}
+
+
+/**************************************************
+*
+* ID2SeqLocAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SeqLocPtr LIBCALL
+ID2SeqLocAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ ValNodePtr anp;
+ Uint1 choice;
+ Boolean isError = FALSE;
+ Boolean nullIsError = FALSE;
+ AsnReadFunc func;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SeqLoc ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_SEQ_LOC);
+ } else {
+ atp = AsnLinkType(orig, ID2_SEQ_LOC); /* link in local tree */
+ }
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ anp = ValNodeNew(NULL);
+ if (anp == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the CHOICE or OpenStruct value (nothing) */
+ goto erret;
+ }
+
+ func = NULL;
+
+ atp = AsnReadId(aip, amp, atp); /* find the choice */
+ if (atp == NULL) {
+ goto erret;
+ }
+ if (atp == ID2_SEQ_LOC_gi_whole) {
+ choice = ID2SeqLoc_gi_whole;
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ anp->data.intvalue = av.intvalue;
+ }
+ else if (atp == ID2_SEQ_LOC_interval) {
+ choice = ID2SeqLoc_interval;
+ func = (AsnReadFunc) ID2IntervalAsnRead;
+ }
+ else if (atp == ID2_SEQ_LOC_packed_ints) {
+ choice = ID2SeqLoc_packed_ints;
+ func = (AsnReadFunc) ID2PackedSeqIntsAsnRead;
+ }
+ else if (atp == ID2_SEQ_LOC_gi_whole_range) {
+ choice = ID2SeqLoc_gi_whole_range;
+ func = (AsnReadFunc) ID2IdRangeAsnRead;
+ }
+ else if (atp == ID2_SEQ_LOC_loc_set) {
+ choice = ID2SeqLoc_loc_set;
+ anp -> data.ptrvalue =
+ AsnGenericChoiceSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SeqLocAsnRead, (AsnOptFreeFunc) ID2SeqLocFree);
+ if (isError && anp -> data.ptrvalue == NULL) {
+ goto erret;
+ }
+ }
+ else if (atp == ID2_SEQ_LOC_seq_loc) {
+ choice = ID2SeqLoc_seq_loc;
+ func = (AsnReadFunc) SeqLocAsnRead;
+ }
+ anp->choice = choice;
+ if (func != NULL)
+ {
+ anp->data.ptrvalue = (* func)(aip, atp);
+ if (aip -> io_failure) goto erret;
+
+ if (nullIsError && anp->data.ptrvalue == NULL) {
+ goto erret;
+ }
+ }
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return anp;
+
+erret:
+ anp = MemFree(anp);
+ aip -> io_failure = TRUE;
+ goto ret;
+}
+
+
+/**************************************************
+*
+* ID2SeqLocAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SeqLocAsnWrite(ID2SeqLocPtr anp, AsnIoPtr aip, AsnTypePtr orig)
+
+{
+ DataVal av;
+ AsnTypePtr atp, writetype = NULL;
+ Pointer pnt;
+ AsnWriteFunc func = NULL;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad())
+ return FALSE;
+ }
+
+ if (aip == NULL)
+ return FALSE;
+
+ atp = AsnLinkType(orig, ID2_SEQ_LOC); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+
+ av.ptrvalue = (Pointer)anp;
+ if (! AsnWriteChoice(aip, atp, (Int2)anp->choice, &av)) {
+ goto erret;
+ }
+
+ pnt = anp->data.ptrvalue;
+ switch (anp->choice)
+ {
+ case ID2SeqLoc_gi_whole:
+ av.intvalue = anp->data.intvalue;
+ retval = AsnWrite(aip, ID2_SEQ_LOC_gi_whole, &av);
+ break;
+ case ID2SeqLoc_interval:
+ writetype = ID2_SEQ_LOC_interval;
+ func = (AsnWriteFunc) ID2IntervalAsnWrite;
+ break;
+ case ID2SeqLoc_packed_ints:
+ writetype = ID2_SEQ_LOC_packed_ints;
+ func = (AsnWriteFunc) ID2PackedSeqIntsAsnWrite;
+ break;
+ case ID2SeqLoc_gi_whole_range:
+ writetype = ID2_SEQ_LOC_gi_whole_range;
+ func = (AsnWriteFunc) ID2IdRangeAsnWrite;
+ break;
+ case ID2SeqLoc_loc_set:
+ retval = AsnGenericChoiceSeqOfAsnWrite((Pointer) pnt, (AsnWriteFunc) ID2SeqLocAsnWrite, aip, ID2_SEQ_LOC_loc_set, ID2_SEQ_LOC_loc_set_E);
+ break;
+ case ID2SeqLoc_seq_loc:
+ writetype = ID2_SEQ_LOC_seq_loc;
+ func = (AsnWriteFunc) SeqLocAsnWrite;
+ break;
+ }
+ if (writetype != NULL) {
+ retval = (* func)(pnt, aip, writetype); /* write it out */
+ }
+ if (!retval) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+/**************************************************
+*
+* ID2SChunkNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2SChunkPtr LIBCALL
+ID2SChunkNew(void)
+{
+ ID2SChunkPtr ptr = MemNew((size_t) sizeof(ID2SChunk));
+
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2SChunkFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SChunkPtr LIBCALL
+ID2SChunkFree(ID2SChunkPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ AsnGenericUserSeqOfFree(ptr -> data, (AsnOptFreeFunc) ID2SChunkDataFree);
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2SChunkAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SChunkPtr LIBCALL
+ID2SChunkAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2SChunkPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SChunk ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_CHUNK);
+ } else {
+ atp = AsnLinkType(orig, ID2S_CHUNK);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2SChunkNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2S_CHUNK_data) {
+ ptr -> data = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SChunkDataAsnRead, (AsnOptFreeFunc) ID2SChunkDataFree);
+ if (isError && ptr -> data == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2SChunkFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2SChunkAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SChunkAsnWrite(ID2SChunkPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2S_CHUNK); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ AsnGenericUserSeqOfAsnWrite(ptr -> data, (AsnWriteFunc) ID2SChunkDataAsnWrite, aip, ID2S_CHUNK_data, ID2S_CHUNK_data_E);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2SChunkDataNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2SChunkDataPtr LIBCALL
+ID2SChunkDataNew(void)
+{
+ ID2SChunkDataPtr ptr = MemNew((size_t) sizeof(ID2SChunkData));
+
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2SChunkDataFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SChunkDataPtr LIBCALL
+ID2SChunkDataFree(ID2SChunkDataPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ Id_idFree(ptr -> Id_id);
+ AsnGenericChoiceSeqOfFree(ptr -> descrs, (AsnOptFreeFunc) SeqDescrFree);
+ AsnGenericUserSeqOfFree(ptr -> annots, (AsnOptFreeFunc) SeqAnnotFree);
+ AsnGenericUserSeqOfFree(ptr -> assembly, (AsnOptFreeFunc) SeqAlignFree);
+ AsnGenericUserSeqOfFree(ptr -> seq_map, (AsnOptFreeFunc) SeqLiteralFree);
+ AsnGenericUserSeqOfFree(ptr -> seq_data, (AsnOptFreeFunc) SeqLiteralFree);
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* Id_idFree()
+*
+**************************************************/
+static
+Id_idPtr LIBCALL
+Id_idFree(ValNodePtr anp)
+{
+ Pointer pnt;
+
+ if (anp == NULL) {
+ return NULL;
+ }
+
+ pnt = anp->data.ptrvalue;
+ switch (anp->choice)
+ {
+ default:
+ break;
+ }
+ return MemFree(anp);
+}
+
+
+/**************************************************
+*
+* ID2SChunkDataAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SChunkDataPtr LIBCALL
+ID2SChunkDataAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2SChunkDataPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SChunkData ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_CHUNK_DATA);
+ } else {
+ atp = AsnLinkType(orig, ID2S_CHUNK_DATA);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2SChunkDataNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2S_CHUNK_DATA_id) {
+ ptr -> Id_id = Id_idAsnRead(aip, atp);
+ if (aip -> io_failure) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_CHUNK_DATA_descrs) {
+ ptr -> descrs = AsnGenericChoiceSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) SeqDescrAsnRead, (AsnOptFreeFunc) SeqDescrFree);
+ if (isError && ptr -> descrs == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_CHUNK_DATA_annots) {
+ ptr -> annots = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) SeqAnnotAsnRead, (AsnOptFreeFunc) SeqAnnotFree);
+ if (isError && ptr -> annots == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_CHUNK_DATA_assembly) {
+ ptr -> assembly = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) SeqAlignAsnRead, (AsnOptFreeFunc) SeqAlignFree);
+ if (isError && ptr -> assembly == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_CHUNK_DATA_seq_map) {
+ ptr -> seq_map = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) SeqLiteralAsnRead, (AsnOptFreeFunc) SeqLiteralFree);
+ if (isError && ptr -> seq_map == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2S_CHUNK_DATA_seq_data) {
+ ptr -> seq_data = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) SeqLiteralAsnRead, (AsnOptFreeFunc) SeqLiteralFree);
+ if (isError && ptr -> seq_data == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2SChunkDataFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* Id_idAsnRead()
+*
+**************************************************/
+static
+Id_idPtr LIBCALL
+Id_idAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ ValNodePtr anp;
+ Uint1 choice;
+ Boolean isError = FALSE;
+ Boolean nullIsError = FALSE;
+ AsnReadFunc func;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* Id_id ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2S_CHUNK_DATA_id);
+ } else {
+ atp = AsnLinkType(orig, ID2S_CHUNK_DATA_id); /* link in local tree */
+ }
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ anp = ValNodeNew(NULL);
+ if (anp == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the CHOICE or OpenStruct value (nothing) */
+ goto erret;
+ }
+
+ func = NULL;
+
+ atp = AsnReadId(aip, amp, atp); /* find the choice */
+ if (atp == NULL) {
+ goto erret;
+ }
+ if (atp == ID2S_CHUNK_DATA_id_bioseq_set) {
+ choice = Id_id_bioseq_set;
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ anp->data.intvalue = av.intvalue;
+ }
+ else if (atp == ID2S_CHUNK_DATA_id_gi) {
+ choice = Id_id_gi;
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ anp->data.intvalue = av.intvalue;
+ }
+ anp->choice = choice;
+ if (func != NULL)
+ {
+ anp->data.ptrvalue = (* func)(aip, atp);
+ if (aip -> io_failure) goto erret;
+
+ if (nullIsError && anp->data.ptrvalue == NULL) {
+ goto erret;
+ }
+ }
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return anp;
+
+erret:
+ anp = MemFree(anp);
+ aip -> io_failure = TRUE;
+ goto ret;
+}
+
+
+/**************************************************
+*
+* ID2SChunkDataAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SChunkDataAsnWrite(ID2SChunkDataPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2S_CHUNK_DATA); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ if (ptr -> Id_id != NULL) {
+ if ( ! Id_idAsnWrite(ptr -> Id_id, aip, ID2S_CHUNK_DATA_id)) {
+ goto erret;
+ }
+ }
+ AsnGenericChoiceSeqOfAsnWrite(ptr -> descrs, (AsnWriteFunc) SeqDescrAsnWrite, aip, ID2S_CHUNK_DATA_descrs, ID2S_CHUNK_DATA_descrs_E);
+ AsnGenericUserSeqOfAsnWrite(ptr -> annots, (AsnWriteFunc) SeqAnnotAsnWrite, aip, ID2S_CHUNK_DATA_annots, ID2S_CHUNK_DATA_annots_E);
+ AsnGenericUserSeqOfAsnWrite(ptr -> assembly, (AsnWriteFunc) SeqAlignAsnWrite, aip, ID2S_CHUNK_DATA_assembly, ID2S_CHUNK_DATA_assembly_E);
+ AsnGenericUserSeqOfAsnWrite(ptr -> seq_map, (AsnWriteFunc) SeqLiteralAsnWrite, aip, ID2S_CHUNK_DATA_seq_map, ID2S_CHUNK_DATA_seq_map_E);
+ AsnGenericUserSeqOfAsnWrite(ptr -> seq_data, (AsnWriteFunc) SeqLiteralAsnWrite, aip, ID2S_CHUNK_DATA_seq_data, ID2S_CHUNK_DATA_seq_data_E);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* Id_idAsnWrite()
+*
+**************************************************/
+static Boolean LIBCALL
+Id_idAsnWrite(Id_idPtr anp, AsnIoPtr aip, AsnTypePtr orig)
+
+{
+ DataVal av;
+ AsnTypePtr atp, writetype = NULL;
+ Pointer pnt;
+ AsnWriteFunc func = NULL;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad())
+ return FALSE;
+ }
+
+ if (aip == NULL)
+ return FALSE;
+
+ atp = AsnLinkType(orig, ID2S_CHUNK_DATA_id); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+
+ av.ptrvalue = (Pointer)anp;
+ if (! AsnWriteChoice(aip, atp, (Int2)anp->choice, &av)) {
+ goto erret;
+ }
+
+ pnt = anp->data.ptrvalue;
+ switch (anp->choice)
+ {
+ case Id_id_bioseq_set:
+ av.intvalue = anp->data.intvalue;
+ retval = AsnWrite(aip, ID2S_CHUNK_DATA_id_bioseq_set, &av);
+ break;
+ case Id_id_gi:
+ av.intvalue = anp->data.intvalue;
+ retval = AsnWrite(aip, ID2S_CHUNK_DATA_id_gi, &av);
+ break;
+ }
+ if (writetype != NULL) {
+ retval = (* func)(pnt, aip, writetype); /* write it out */
+ }
+ if (!retval) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+/**************************************************
+*
+* ID2IntervalNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2IntervalPtr LIBCALL
+ID2IntervalNew(void)
+{
+ ID2IntervalPtr ptr = MemNew((size_t) sizeof(ID2Interval));
+
+ ptr -> length = 1;
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2IntervalFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2IntervalPtr LIBCALL
+ID2IntervalFree(ID2IntervalPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2IntervalAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2IntervalPtr LIBCALL
+ID2IntervalAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2IntervalPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2Interval ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_INTERVAL);
+ } else {
+ atp = AsnLinkType(orig, ID2_INTERVAL);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2IntervalNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2_INTERVAL_gi) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> gi = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2_INTERVAL_start) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> start = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2_INTERVAL_length) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> length = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2IntervalFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2IntervalAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2IntervalAsnWrite(ID2IntervalPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2_INTERVAL); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ av.intvalue = ptr -> gi;
+ retval = AsnWrite(aip, ID2_INTERVAL_gi, &av);
+ av.intvalue = ptr -> start;
+ retval = AsnWrite(aip, ID2_INTERVAL_start, &av);
+ av.intvalue = ptr -> length;
+ retval = AsnWrite(aip, ID2_INTERVAL_length, &av);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2PackedSeqIntsNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2PackedSeqIntsPtr LIBCALL
+ID2PackedSeqIntsNew(void)
+{
+ ID2PackedSeqIntsPtr ptr = MemNew((size_t) sizeof(ID2PackedSeqInts));
+
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2PackedSeqIntsFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2PackedSeqIntsPtr LIBCALL
+ID2PackedSeqIntsFree(ID2PackedSeqIntsPtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ AsnGenericUserSeqOfFree(ptr -> intervals, (AsnOptFreeFunc) ID2SeqRangeFree);
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2PackedSeqIntsAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2PackedSeqIntsPtr LIBCALL
+ID2PackedSeqIntsAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2PackedSeqIntsPtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2PackedSeqInts ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_PACKED_SEQ_INTS);
+ } else {
+ atp = AsnLinkType(orig, ID2_PACKED_SEQ_INTS);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2PackedSeqIntsNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2_PACKED_SEQ_INTS_gi) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> gi = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2_PACKED_SEQ_INTS_intervals) {
+ ptr -> intervals = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) ID2SeqRangeAsnRead, (AsnOptFreeFunc) ID2SeqRangeFree);
+ if (isError && ptr -> intervals == NULL) {
+ goto erret;
+ }
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2PackedSeqIntsFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2PackedSeqIntsAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2PackedSeqIntsAsnWrite(ID2PackedSeqIntsPtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2_PACKED_SEQ_INTS); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ av.intvalue = ptr -> gi;
+ retval = AsnWrite(aip, ID2_PACKED_SEQ_INTS_gi, &av);
+ AsnGenericUserSeqOfAsnWrite(ptr -> intervals, (AsnWriteFunc) ID2SeqRangeAsnWrite, aip, ID2_PACKED_SEQ_INTS_intervals, ID2_PACKED_SEQ_INTS_intervals_E);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
+
+
+/**************************************************
+*
+* ID2SeqRangeNew()
+*
+**************************************************/
+NLM_EXTERN
+ID2SeqRangePtr LIBCALL
+ID2SeqRangeNew(void)
+{
+ ID2SeqRangePtr ptr = MemNew((size_t) sizeof(ID2SeqRange));
+
+ ptr -> length = 1;
+ return ptr;
+
+}
+
+
+/**************************************************
+*
+* ID2SeqRangeFree()
+*
+**************************************************/
+NLM_EXTERN
+ID2SeqRangePtr LIBCALL
+ID2SeqRangeFree(ID2SeqRangePtr ptr)
+{
+
+ if(ptr == NULL) {
+ return NULL;
+ }
+ return MemFree(ptr);
+}
+
+
+/**************************************************
+*
+* ID2SeqRangeAsnRead()
+*
+**************************************************/
+NLM_EXTERN
+ID2SeqRangePtr LIBCALL
+ID2SeqRangeAsnRead(AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean isError = FALSE;
+ AsnReadFunc func;
+ ID2SeqRangePtr ptr;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return NULL;
+ }
+ }
+
+ if (aip == NULL) {
+ return NULL;
+ }
+
+ if (orig == NULL) { /* ID2SeqRange ::= (self contained) */
+ atp = AsnReadId(aip, amp, ID2_SEQ_RANGE);
+ } else {
+ atp = AsnLinkType(orig, ID2_SEQ_RANGE);
+ }
+ /* link in local tree */
+ if (atp == NULL) {
+ return NULL;
+ }
+
+ ptr = ID2SeqRangeNew();
+ if (ptr == NULL) {
+ goto erret;
+ }
+ if (AsnReadVal(aip, atp, &av) <= 0) { /* read the start struct */
+ goto erret;
+ }
+
+ atp = AsnReadId(aip,amp, atp);
+ func = NULL;
+
+ if (atp == ID2_SEQ_RANGE_start) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> start = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+ if (atp == ID2_SEQ_RANGE_length) {
+ if ( AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ ptr -> length = av.intvalue;
+ atp = AsnReadId(aip,amp, atp);
+ }
+
+ if (AsnReadVal(aip, atp, &av) <= 0) {
+ goto erret;
+ }
+ /* end struct */
+
+ret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return ptr;
+
+erret:
+ aip -> io_failure = TRUE;
+ ptr = ID2SeqRangeFree(ptr);
+ goto ret;
+}
+
+
+
+/**************************************************
+*
+* ID2SeqRangeAsnWrite()
+*
+**************************************************/
+NLM_EXTERN Boolean LIBCALL
+ID2SeqRangeAsnWrite(ID2SeqRangePtr ptr, AsnIoPtr aip, AsnTypePtr orig)
+{
+ DataVal av;
+ AsnTypePtr atp;
+ Boolean retval = FALSE;
+
+ if (! loaded)
+ {
+ if (! id2sgenAsnLoad()) {
+ return FALSE;
+ }
+ }
+
+ if (aip == NULL) {
+ return FALSE;
+ }
+
+ atp = AsnLinkType(orig, ID2_SEQ_RANGE); /* link local tree */
+ if (atp == NULL) {
+ return FALSE;
+ }
+
+ if (ptr == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
+ if (! AsnOpenStruct(aip, atp, (Pointer) ptr)) {
+ goto erret;
+ }
+
+ av.intvalue = ptr -> start;
+ retval = AsnWrite(aip, ID2_SEQ_RANGE_start, &av);
+ av.intvalue = ptr -> length;
+ retval = AsnWrite(aip, ID2_SEQ_RANGE_length, &av);
+ if (! AsnCloseStruct(aip, atp, (Pointer)ptr)) {
+ goto erret;
+ }
+ retval = TRUE;
+
+erret:
+ AsnUnlinkType(orig); /* unlink local tree */
+ return retval;
+}
+
diff --git a/network/id2arch/id2sgen.h b/network/id2arch/id2sgen.h
new file mode 100644
index 00000000..77c3d001
--- /dev/null
+++ b/network/id2arch/id2sgen.h
@@ -0,0 +1,415 @@
+#ifndef _id2sgen_
+#define _id2sgen_
+
+#undef NLM_EXTERN
+#ifdef NLM_IMPORT
+#define NLM_EXTERN NLM_IMPORT
+#else
+#define NLM_EXTERN extern
+#endif
+
+
+#ifdef __cplusplus
+extern "C" { /* } */
+#endif
+
+
+/**************************************************
+*
+* Generated objects for Module NCBI-Seq-split
+* Generated using ASNCODE Revision: 6.0 at May 3, 2004 6:18 PM
+*
+**************************************************/
+
+NLM_EXTERN Boolean LIBCALL
+id2sgenAsnLoad PROTO((void));
+
+
+/**************************************************
+*
+* ID2SSeqAnnotInfo
+*
+**************************************************/
+typedef struct struct_ID2S_Seq_annot_Info {
+ CharPtr name;
+ Uint1 align;
+ Uint1 graph;
+ struct struct_ID2S_Feat_type_Info PNTR feat;
+ ValNodePtr seq_loc;
+} ID2SSeqAnnotInfo, PNTR ID2SSeqAnnotInfoPtr;
+
+
+NLM_EXTERN ID2SSeqAnnotInfoPtr LIBCALL ID2SSeqAnnotInfoFree PROTO ((ID2SSeqAnnotInfoPtr ));
+NLM_EXTERN ID2SSeqAnnotInfoPtr LIBCALL ID2SSeqAnnotInfoNew PROTO (( void ));
+NLM_EXTERN ID2SSeqAnnotInfoPtr LIBCALL ID2SSeqAnnotInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SSeqAnnotInfoAsnWrite PROTO (( ID2SSeqAnnotInfoPtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2SSplitInfo
+*
+**************************************************/
+typedef struct struct_ID2S_Split_Info {
+ struct struct_ID2S_Bioseqs_Info PNTR bioseqs_info;
+ struct struct_ID2S_Chunk_Info PNTR chunks;
+} ID2SSplitInfo, PNTR ID2SSplitInfoPtr;
+
+
+NLM_EXTERN ID2SSplitInfoPtr LIBCALL ID2SSplitInfoFree PROTO ((ID2SSplitInfoPtr ));
+NLM_EXTERN ID2SSplitInfoPtr LIBCALL ID2SSplitInfoNew PROTO (( void ));
+NLM_EXTERN ID2SSplitInfoPtr LIBCALL ID2SSplitInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SSplitInfoAsnWrite PROTO (( ID2SSplitInfoPtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2SBioseqsInfo
+*
+**************************************************/
+typedef struct struct_ID2S_Bioseqs_Info {
+ struct struct_ID2S_Bioseqs_Info PNTR next;
+ struct struct_ID2S_Bioseq_Info PNTR info;
+ struct struct_ID2_Id_Range PNTR bioseqs;
+} ID2SBioseqsInfo, PNTR ID2SBioseqsInfoPtr;
+
+
+NLM_EXTERN ID2SBioseqsInfoPtr LIBCALL ID2SBioseqsInfoFree PROTO ((ID2SBioseqsInfoPtr ));
+NLM_EXTERN ID2SBioseqsInfoPtr LIBCALL ID2SBioseqsInfoNew PROTO (( void ));
+NLM_EXTERN ID2SBioseqsInfoPtr LIBCALL ID2SBioseqsInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SBioseqsInfoAsnWrite PROTO (( ID2SBioseqsInfoPtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2SChunkInfo
+*
+**************************************************/
+typedef struct struct_ID2S_Chunk_Info {
+ struct struct_ID2S_Chunk_Info PNTR next;
+ Int4 id;
+ ValNodePtr content;
+} ID2SChunkInfo, PNTR ID2SChunkInfoPtr;
+
+
+NLM_EXTERN ID2SChunkInfoPtr LIBCALL ID2SChunkInfoFree PROTO ((ID2SChunkInfoPtr ));
+NLM_EXTERN ID2SChunkInfoPtr LIBCALL ID2SChunkInfoNew PROTO (( void ));
+NLM_EXTERN ID2SChunkInfoPtr LIBCALL ID2SChunkInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SChunkInfoAsnWrite PROTO (( ID2SChunkInfoPtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2SBioseqInfo
+*
+**************************************************/
+typedef struct struct_ID2S_Bioseq_Info {
+ Int4 gap_count;
+ Uint1 seq_map_has_ref;
+ struct struct_ID2S_Sequence_Split_Info PNTR sequence_split;
+} ID2SBioseqInfo, PNTR ID2SBioseqInfoPtr;
+
+
+NLM_EXTERN ID2SBioseqInfoPtr LIBCALL ID2SBioseqInfoFree PROTO ((ID2SBioseqInfoPtr ));
+NLM_EXTERN ID2SBioseqInfoPtr LIBCALL ID2SBioseqInfoNew PROTO (( void ));
+NLM_EXTERN ID2SBioseqInfoPtr LIBCALL ID2SBioseqInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SBioseqInfoAsnWrite PROTO (( ID2SBioseqInfoPtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2IdRange
+*
+**************************************************/
+typedef struct struct_ID2_Id_Range {
+ struct struct_ID2_Id_Range PNTR next;
+ Int4 start;
+ Int4 count;
+} ID2IdRange, PNTR ID2IdRangePtr;
+
+
+NLM_EXTERN ID2IdRangePtr LIBCALL ID2IdRangeFree PROTO ((ID2IdRangePtr ));
+NLM_EXTERN ID2IdRangePtr LIBCALL ID2IdRangeNew PROTO (( void ));
+NLM_EXTERN ID2IdRangePtr LIBCALL ID2IdRangeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2IdRangeAsnWrite PROTO (( ID2IdRangePtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2SSequenceSplitInfo
+*
+**************************************************/
+typedef struct struct_ID2S_Sequence_Split_Info {
+ Int4 block_size;
+ Int4 chunk_start;
+ ValNodePtr chunk_blocks;
+} ID2SSequenceSplitInfo, PNTR ID2SSequenceSplitInfoPtr;
+
+
+NLM_EXTERN ID2SSequenceSplitInfoPtr LIBCALL ID2SSequenceSplitInfoFree PROTO ((ID2SSequenceSplitInfoPtr ));
+NLM_EXTERN ID2SSequenceSplitInfoPtr LIBCALL ID2SSequenceSplitInfoNew PROTO (( void ));
+NLM_EXTERN ID2SSequenceSplitInfoPtr LIBCALL ID2SSequenceSplitInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SSequenceSplitInfoAsnWrite PROTO (( ID2SSequenceSplitInfoPtr , AsnIoPtr, AsnTypePtr));
+
+typedef ValNodePtr ID2SChunkContentPtr;
+typedef ValNode ID2SChunkContent;
+#define ID2SChunkContent_seq_descr 1
+#define ID2SChunkContent_seq_annot 2
+#define ID2SChunkContent_seq_assembly 3
+#define ID2SChunkContent_seq_map 4
+#define ID2SChunkContent_seq_data 5
+#define ID2SChunkContent_seq_annot_place 6
+
+
+NLM_EXTERN ID2SChunkContentPtr LIBCALL ID2SChunkContentFree PROTO ((ID2SChunkContentPtr ));
+NLM_EXTERN ID2SChunkContentPtr LIBCALL ID2SChunkContentAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SChunkContentAsnWrite PROTO (( ID2SChunkContentPtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2SSeqDescrInfo
+*
+**************************************************/
+typedef struct struct_ID2S_Seq_descr_Info {
+ Int4 type_mask;
+ struct struct_ID2_Id_Range PNTR bioseqs;
+ struct struct_ID2_Id_Range PNTR bioseq_sets;
+} ID2SSeqDescrInfo, PNTR ID2SSeqDescrInfoPtr;
+
+
+NLM_EXTERN ID2SSeqDescrInfoPtr LIBCALL ID2SSeqDescrInfoFree PROTO ((ID2SSeqDescrInfoPtr ));
+NLM_EXTERN ID2SSeqDescrInfoPtr LIBCALL ID2SSeqDescrInfoNew PROTO (( void ));
+NLM_EXTERN ID2SSeqDescrInfoPtr LIBCALL ID2SSeqDescrInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SSeqDescrInfoAsnWrite PROTO (( ID2SSeqDescrInfoPtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2SSeqAssemblyInfo
+*
+**************************************************/
+typedef struct struct_ID2S_Seq_assembly_Info {
+ struct struct_ID2_Id_Range PNTR bioseqs;
+} ID2SSeqAssemblyInfo, PNTR ID2SSeqAssemblyInfoPtr;
+
+
+NLM_EXTERN ID2SSeqAssemblyInfoPtr LIBCALL ID2SSeqAssemblyInfoFree PROTO ((ID2SSeqAssemblyInfoPtr ));
+NLM_EXTERN ID2SSeqAssemblyInfoPtr LIBCALL ID2SSeqAssemblyInfoNew PROTO (( void ));
+NLM_EXTERN ID2SSeqAssemblyInfoPtr LIBCALL ID2SSeqAssemblyInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SSeqAssemblyInfoAsnWrite PROTO (( ID2SSeqAssemblyInfoPtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2SSeqMapInfo
+*
+**************************************************/
+#define ID2SSeqMapInfo ValNode
+#define ID2SSeqMapInfoPtr ValNodePtr
+#define ID2SSeqMapInfoFree ValNodeFree
+#define ID2SSeqMapInfoNew ValNodeNew
+#define ID2SSeqMapInfoAsnRead ValNodeAsnRead
+#define ID2SSeqMapInfoAsnWrite ValNodeAsnWrite
+
+
+/**************************************************
+*
+* ID2SSeqDataInfo
+*
+**************************************************/
+#define ID2SSeqDataInfo ValNode
+#define ID2SSeqDataInfoPtr ValNodePtr
+#define ID2SSeqDataInfoFree ValNodeFree
+#define ID2SSeqDataInfoNew ValNodeNew
+#define ID2SSeqDataInfoAsnRead ValNodeAsnRead
+#define ID2SSeqDataInfoAsnWrite ValNodeAsnWrite
+
+
+/**************************************************
+*
+* ID2SSeqAnnotPlaceInfo
+*
+**************************************************/
+typedef struct struct_ID2S_Seq_annot_place_Info {
+ CharPtr name;
+ struct struct_ID2_Id_Range PNTR bioseqs;
+ struct struct_ID2_Id_Range PNTR bioseq_sets;
+} ID2SSeqAnnotPlaceInfo, PNTR ID2SSeqAnnotPlaceInfoPtr;
+
+
+NLM_EXTERN ID2SSeqAnnotPlaceInfoPtr LIBCALL ID2SSeqAnnotPlaceInfoFree PROTO ((ID2SSeqAnnotPlaceInfoPtr ));
+NLM_EXTERN ID2SSeqAnnotPlaceInfoPtr LIBCALL ID2SSeqAnnotPlaceInfoNew PROTO (( void ));
+NLM_EXTERN ID2SSeqAnnotPlaceInfoPtr LIBCALL ID2SSeqAnnotPlaceInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SSeqAnnotPlaceInfoAsnWrite PROTO (( ID2SSeqAnnotPlaceInfoPtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2SFeatTypeInfo
+*
+**************************************************/
+typedef struct struct_ID2S_Feat_type_Info {
+ struct struct_ID2S_Feat_type_Info PNTR next;
+ Int4 type;
+ ValNodePtr subtypes;
+} ID2SFeatTypeInfo, PNTR ID2SFeatTypeInfoPtr;
+
+
+NLM_EXTERN ID2SFeatTypeInfoPtr LIBCALL ID2SFeatTypeInfoFree PROTO ((ID2SFeatTypeInfoPtr ));
+NLM_EXTERN ID2SFeatTypeInfoPtr LIBCALL ID2SFeatTypeInfoNew PROTO (( void ));
+NLM_EXTERN ID2SFeatTypeInfoPtr LIBCALL ID2SFeatTypeInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SFeatTypeInfoAsnWrite PROTO (( ID2SFeatTypeInfoPtr , AsnIoPtr, AsnTypePtr));
+
+typedef ValNodePtr ID2SeqLocPtr;
+typedef ValNode ID2SeqLoc;
+#define ID2SeqLoc_gi_whole 1
+#define ID2SeqLoc_interval 2
+#define ID2SeqLoc_packed_ints 3
+#define ID2SeqLoc_gi_whole_range 4
+#define ID2SeqLoc_loc_set 5
+#define ID2SeqLoc_seq_loc 6
+
+
+NLM_EXTERN ID2SeqLocPtr LIBCALL ID2SeqLocFree PROTO ((ID2SeqLocPtr ));
+NLM_EXTERN ID2SeqLocPtr LIBCALL ID2SeqLocAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SeqLocAsnWrite PROTO (( ID2SeqLocPtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2SChunk
+*
+**************************************************/
+typedef struct struct_ID2S_Chunk {
+ struct struct_ID2S_Chunk_Data PNTR data;
+} ID2SChunk, PNTR ID2SChunkPtr;
+
+
+NLM_EXTERN ID2SChunkPtr LIBCALL ID2SChunkFree PROTO ((ID2SChunkPtr ));
+NLM_EXTERN ID2SChunkPtr LIBCALL ID2SChunkNew PROTO (( void ));
+NLM_EXTERN ID2SChunkPtr LIBCALL ID2SChunkAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SChunkAsnWrite PROTO (( ID2SChunkPtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2SChunkData
+*
+**************************************************/
+typedef struct struct_ID2S_Chunk_Data {
+ struct struct_ID2S_Chunk_Data PNTR next;
+ ValNodePtr Id_id;
+ ValNodePtr descrs;
+ struct struct_Seq_annot PNTR annots;
+ struct struct_Seq_align PNTR assembly;
+ struct struct_Seq_literal PNTR seq_map;
+ struct struct_Seq_literal PNTR seq_data;
+} ID2SChunkData, PNTR ID2SChunkDataPtr;
+
+
+NLM_EXTERN ID2SChunkDataPtr LIBCALL ID2SChunkDataFree PROTO ((ID2SChunkDataPtr ));
+NLM_EXTERN ID2SChunkDataPtr LIBCALL ID2SChunkDataNew PROTO (( void ));
+NLM_EXTERN ID2SChunkDataPtr LIBCALL ID2SChunkDataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SChunkDataAsnWrite PROTO (( ID2SChunkDataPtr , AsnIoPtr, AsnTypePtr));
+
+
+#ifdef NLM_GENERATED_CODE_PROTO
+
+typedef ValNodePtr Id_idPtr;
+typedef ValNode Id_id;
+
+#endif /* NLM_GENERATED_CODE_PROTO */
+
+#define Id_id_bioseq_set 1
+#define Id_id_gi 2
+
+#ifdef NLM_GENERATED_CODE_PROTO
+
+static Id_idPtr LIBCALL Id_idFree PROTO ((Id_idPtr ));
+static Id_idPtr LIBCALL Id_idAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+static Boolean LIBCALL Id_idAsnWrite PROTO (( Id_idPtr , AsnIoPtr, AsnTypePtr));
+
+#endif /* NLM_GENERATED_CODE_PROTO */
+
+
+
+/**************************************************
+*
+* ID2Interval
+*
+**************************************************/
+typedef struct struct_ID2_Interval {
+ Int4 gi;
+ Int4 start;
+ Int4 length;
+} ID2Interval, PNTR ID2IntervalPtr;
+
+
+NLM_EXTERN ID2IntervalPtr LIBCALL ID2IntervalFree PROTO ((ID2IntervalPtr ));
+NLM_EXTERN ID2IntervalPtr LIBCALL ID2IntervalNew PROTO (( void ));
+NLM_EXTERN ID2IntervalPtr LIBCALL ID2IntervalAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2IntervalAsnWrite PROTO (( ID2IntervalPtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2PackedSeqInts
+*
+**************************************************/
+typedef struct struct_ID2_Packed_Seq_ints {
+ Int4 gi;
+ struct struct_ID2_Seq_range PNTR intervals;
+} ID2PackedSeqInts, PNTR ID2PackedSeqIntsPtr;
+
+
+NLM_EXTERN ID2PackedSeqIntsPtr LIBCALL ID2PackedSeqIntsFree PROTO ((ID2PackedSeqIntsPtr ));
+NLM_EXTERN ID2PackedSeqIntsPtr LIBCALL ID2PackedSeqIntsNew PROTO (( void ));
+NLM_EXTERN ID2PackedSeqIntsPtr LIBCALL ID2PackedSeqIntsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2PackedSeqIntsAsnWrite PROTO (( ID2PackedSeqIntsPtr , AsnIoPtr, AsnTypePtr));
+
+
+
+/**************************************************
+*
+* ID2SeqRange
+*
+**************************************************/
+typedef struct struct_ID2_Seq_range {
+ struct struct_ID2_Seq_range PNTR next;
+ Int4 start;
+ Int4 length;
+} ID2SeqRange, PNTR ID2SeqRangePtr;
+
+
+NLM_EXTERN ID2SeqRangePtr LIBCALL ID2SeqRangeFree PROTO ((ID2SeqRangePtr ));
+NLM_EXTERN ID2SeqRangePtr LIBCALL ID2SeqRangeNew PROTO (( void ));
+NLM_EXTERN ID2SeqRangePtr LIBCALL ID2SeqRangeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
+NLM_EXTERN Boolean LIBCALL ID2SeqRangeAsnWrite PROTO (( ID2SeqRangePtr , AsnIoPtr, AsnTypePtr));
+
+#ifdef __cplusplus
+/* { */ }
+#endif
+
+#endif /* _id2sgen_ */
+
+#undef NLM_EXTERN
+#ifdef NLM_EXPORT
+#define NLM_EXTERN NLM_EXPORT
+#else
+#define NLM_EXTERN
+#endif
+
diff --git a/network/id2arch/makefile b/network/id2arch/makefile
new file mode 100644
index 00000000..7935ef0d
--- /dev/null
+++ b/network/id2arch/makefile
@@ -0,0 +1,57 @@
+include $(NCBI)/ncbi.mk
+
+INCLUDES = -I . -I$(NCBI_INCDIR)
+CCOPT= -g -DSYSV=1
+CFLAGS=$(CCOPT) $(INCLUDES) #-DDEBUG_ASN_PRINT
+
+CODEGEN=$(NCBI)/bin/asncode
+ASNTOOL=$(NCBI)/bin/asntool
+
+NCBI_USED=/am/ncbiapdata/asn/seqset.asn
+NCBI_REFS=/am/ncbiapdata/asn/seq.asn,/am/ncbiapdata/asn/seqfeat.asn,/am/ncbiapdata/asn/seqloc.asn,/am/ncbiapdata/asn/general.asn,/am/ncbiapdata/asn/seqalign.asn,/am/ncbiapdata/asn/seqcode.asn,/am/ncbiapdata/asn/seqres.asn
+
+all: libncbiid2.a
+#id2.o: id2.c id2.h
+# cpp -C -P -D_DEBUG -I. -I$(NCBI)/include id2.c >id2.i
+# cc -xildoff -c -g -D_DEBUG -I. -I$(NCBI)/include id2.c
+# $(NCBI_CC) -g -xildoff -c id2.i
+libncbiid2.a : id2.o id2sgen.o
+ rm -f $@
+ ar -q $@ id2.o
+ - rm -f *.l
+
+id2.o: id2.c id2gen.h id2map.h id2sgen.h
+id2sgen.o: id2sgen.c id2sgen.h id2map.h seqsplit.h
+
+id2sgen.c id2sgen.h: seqsplit.l all.l
+ $(CODEGEN) -i id2map.h -l seqsplit.l,all.l -o id2sgen -d .
+
+id2.c: id2.l id2.h all.l seqsplit.l
+ $(CODEGEN) -i id2map.h -l id2.l,seqsplit.l,all.l -o id2gen -d .
+ mv id2gen.c id2.c
+
+id2.l : id2.asn
+ $(ASNTOOL) -m id2.asn -l x.h
+ cat x.l* | sed 's/x[.]l[0-9]*/id2.l/g' >id2.l
+ rm -f x.*
+
+seqsplit.l : seqsplit.asn
+ $(ASNTOOL) -m seqsplit.asn -l x.h
+ cat x.l* | sed 's/x[.]l[0-9]*/seqsplit.l/g' >seqsplit.l
+ rm -f x.*
+
+all.l :
+ cat $(NCBI_USED) >x.asn
+ $(ASNTOOL) -m x.asn -M $(NCBI_REFS) -l x.h
+ cat x.l* | sed 's/x[.]l[0-9]*/all.l/g' >all.l
+ rm -f x.*
+
+id2.h : id2.asn
+ $(ASNTOOL) -m id2.asn -o id2.h
+seqsplit.h : seqsplit.asn
+ $(ASNTOOL) -m seqsplit.asn -o seqsplit.h
+
+clean:
+ - rm -f *.l* *.c *.o *.a
+ - rm -f id2.h id2gen.h id2sgen.h seqsplit.h
+ - rm -f id2generr id2genout
diff --git a/network/id2arch/seqsplit.asn b/network/id2arch/seqsplit.asn
new file mode 100644
index 00000000..46932fe8
--- /dev/null
+++ b/network/id2arch/seqsplit.asn
@@ -0,0 +1,175 @@
+--$Revision: 1.3 $
+--********************************************************************
+--
+-- Network Id server network access
+-- Vasilchenko 2003
+--
+--
+--*********************************************************************
+--
+-- ID2.asn
+--
+-- messages for id server network access
+--
+--*********************************************************************
+
+NCBI-Seq-split DEFINITIONS ::=
+BEGIN
+
+EXPORTS ID2S-Chunk-Id, ID2S-Seq-annot-Info;
+
+IMPORTS Seq-loc FROM NCBI-Seqloc
+ Seq-annot, Seq-descr, Seq-literal FROM NCBI-Sequence
+ Seq-align FROM NCBI-Seqalign;
+
+----------------------------------------------------------------------------
+-- Blob split info types
+----------------------------------------------------------------------------
+
+
+ID2S-Split-Info ::= SEQUENCE {
+ bioseqs-info SET OF ID2S-Bioseqs-Info OPTIONAL,
+ chunks SET OF ID2S-Chunk-Info
+}
+
+
+ID2S-Bioseqs-Info ::= SEQUENCE {
+ info ID2S-Bioseq-Info,
+ bioseqs ID2-Id-Range
+}
+
+
+ID2S-Bioseq-Info ::= SEQUENCE {
+ gap-count INTEGER OPTIONAL,
+ seq-map-has-ref BOOLEAN OPTIONAL,
+ sequence-split ID2S-Sequence-Split-Info OPTIONAL
+}
+
+
+ID2S-Sequence-Split-Info ::= SEQUENCE {
+ block-size INTEGER,
+ chunk-start ID2S-Chunk-Id,
+ chunk-blocks SEQUENCE OF INTEGER
+}
+
+
+ID2S-Chunk-Info ::= SEQUENCE {
+ id ID2S-Chunk-Id,
+ content SET OF ID2S-Chunk-Content
+}
+
+
+ID2S-Chunk-Content ::= CHOICE {
+ seq-descr ID2S-Seq-descr-Info,
+ seq-annot ID2S-Seq-annot-Info,
+ seq-assembly ID2S-Seq-assembly-Info,
+ seq-map ID2S-Seq-map-Info,
+ seq-data ID2S-Seq-data-Info,
+ seq-annot-place ID2S-Seq-annot-place-Info
+}
+
+
+ID2S-Seq-descr-Info ::= SEQUENCE {
+ type-mask INTEGER, -- mask of Seq-descr types,
+ bioseqs SET OF ID2-Id-Range OPTIONAL,
+ bioseq-sets SET OF ID2-Id-Range OPTIONAL
+}
+
+
+ID2S-Seq-annot-Info ::= SEQUENCE {
+ -- name is set if this is named annot
+ -- name may be empty which differ from unnamed annot
+ name VisibleString OPTIONAL,
+ align NULL OPTIONAL,
+ graph NULL OPTIONAL,
+ feat SET OF ID2S-Feat-type-Info OPTIONAL,
+ seq-loc ID2-Seq-loc OPTIONAL
+}
+
+
+ID2S-Seq-annot-place-Info ::= SEQUENCE {
+ name VisibleString OPTIONAL,
+ bioseqs SET OF ID2-Id-Range OPTIONAL,
+ bioseq-sets SET OF ID2-Id-Range OPTIONAL
+}
+
+
+ID2S-Feat-type-Info ::= SEQUENCE {
+ type INTEGER,
+ subtypes SET OF INTEGER OPTIONAL
+}
+
+
+ID2S-Seq-assembly-Info ::= SEQUENCE {
+ bioseqs SET OF ID2-Id-Range
+}
+
+
+ID2S-Seq-map-Info ::= ID2-Seq-loc
+
+
+ID2S-Seq-data-Info ::= ID2-Seq-loc
+
+
+ID2S-Chunk ::= SEQUENCE {
+ data SET OF ID2S-Chunk-Data
+}
+
+
+ID2S-Chunk-Data ::= SEQUENCE {
+ id CHOICE {
+ bioseq-set INTEGER,
+ gi INTEGER
+ },
+ descrs SET OF Seq-descr OPTIONAL,
+ annots SET OF Seq-annot OPTIONAL,
+ assembly SET OF Seq-align OPTIONAL,
+ seq-map SEQUENCE OF Seq-literal OPTIONAL,
+ seq-data SEQUENCE OF Seq-literal OPTIONAL
+}
+
+
+----------------------------------------------------------------------------
+-- utility types
+----------------------------------------------------------------------------
+
+
+ID2S-Chunk-Id ::= INTEGER
+
+
+ID2-Id-Range ::= SEQUENCE {
+ start INTEGER, -- gi for Bioseq, local id for Bioseq-set
+ count INTEGER DEFAULT 1
+}
+
+
+ID2-Seq-loc ::= CHOICE {
+ gi-whole INTEGER,
+ interval ID2-Interval,
+ packed-ints ID2-Packed-Seq-ints,
+ gi-whole-range ID2-Id-Range,
+ loc-set SET OF ID2-Seq-loc,
+ seq-loc Seq-loc
+}
+
+
+ID2-Interval ::= SEQUENCE {
+ gi INTEGER,
+ start INTEGER,
+ length INTEGER DEFAULT 1
+}
+
+
+ID2-Seq-range ::= SEQUENCE {
+ start INTEGER,
+ length INTEGER DEFAULT 1
+}
+
+
+ID2-Packed-Seq-ints ::= SEQUENCE {
+ gi INTEGER,
+ intervals SET OF ID2-Seq-range
+}
+
+
+END
diff --git a/network/id2arch/seqsplit.h b/network/id2arch/seqsplit.h
new file mode 100644
index 00000000..1a6dbde2
--- /dev/null
+++ b/network/id2arch/seqsplit.h
@@ -0,0 +1,259 @@
+/***********************************************************************
+*
+**
+* Automatic header module from ASNTOOL
+*
+************************************************************************/
+
+#ifndef _ASNTOOL_
+#include <asn.h>
+#endif
+
+static char * asnfilename = "seqsplit.h13";
+static AsnValxNode avnx[3] = {
+ {3,NULL,1,0.0,NULL } ,
+ {3,NULL,1,0.0,NULL } ,
+ {3,NULL,1,0.0,NULL } };
+
+static AsnType atx[109] = {
+ {401, "ID2S-Chunk-Id" ,1,0,0,0,0,1,0,0,NULL,&atx[1],NULL,0,&atx[2]} ,
+ {302, "INTEGER" ,0,2,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
+ {402, "ID2S-Seq-annot-Info" ,1,0,0,0,0,1,0,0,NULL,&atx[15],&atx[3],0,&atx[39]} ,
+ {0, "name" ,128,0,0,1,0,0,0,0,NULL,&atx[4],NULL,0,&atx[5]} ,
+ {323, "VisibleString" ,0,26,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
+ {0, "align" ,128,1,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[7]} ,
+ {305, "NULL" ,0,5,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
+ {0, "graph" ,128,2,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[8]} ,
+ {0, "feat" ,128,3,0,1,0,0,0,0,NULL,&atx[14],&atx[9],0,&atx[16]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[10],NULL,0,NULL} ,
+ {420, "ID2S-Feat-type-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[11],0,&atx[17]} ,
+ {0, "type" ,128,0,0,0,0,0,0,0,NULL,&atx[1],NULL,0,&atx[12]} ,
+ {0, "subtypes" ,128,1,0,1,0,0,0,0,NULL,&atx[14],&atx[13],0,NULL} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[1],NULL,0,NULL} ,
+ {314, "SET OF" ,0,17,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
+ {311, "SEQUENCE" ,0,16,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
+ {0, "seq-loc" ,128,4,0,1,0,0,0,0,NULL,&atx[17],NULL,0,NULL} ,
+ {421, "ID2-Seq-loc" ,1,0,0,0,0,0,0,0,NULL,&atx[40],&atx[18],0,&atx[92]} ,
+ {0, "gi-whole" ,128,0,0,0,0,0,0,0,NULL,&atx[1],NULL,0,&atx[19]} ,
+ {0, "interval" ,128,1,0,0,0,0,0,0,NULL,&atx[20],NULL,0,&atx[24]} ,
+ {424, "ID2-Interval" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[21],0,&atx[25]} ,
+ {0, "gi" ,128,0,0,0,0,0,0,0,NULL,&atx[1],NULL,0,&atx[22]} ,
+ {0, "start" ,128,1,0,0,0,0,0,0,NULL,&atx[1],NULL,0,&atx[23]} ,
+ {0, "length" ,128,2,0,0,1,0,0,0,&avnx[0],&atx[1],NULL,0,NULL} ,
+ {0, "packed-ints" ,128,2,0,0,0,0,0,0,NULL,&atx[25],NULL,0,&atx[32]} ,
+ {425, "ID2-Packed-Seq-ints" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[26],0,&atx[29]} ,
+ {0, "gi" ,128,0,0,0,0,0,0,0,NULL,&atx[1],NULL,0,&atx[27]} ,
+ {0, "intervals" ,128,1,0,0,0,0,0,0,NULL,&atx[14],&atx[28],0,NULL} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[29],NULL,0,NULL} ,
+ {426, "ID2-Seq-range" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[30],0,NULL} ,
+ {0, "start" ,128,0,0,0,0,0,0,0,NULL,&atx[1],NULL,0,&atx[31]} ,
+ {0, "length" ,128,1,0,0,1,0,0,0,&avnx[1],&atx[1],NULL,0,NULL} ,
+ {0, "gi-whole-range" ,128,3,0,0,0,0,0,0,NULL,&atx[33],NULL,0,&atx[36]} ,
+ {412, "ID2-Id-Range" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[34],0,&atx[55]} ,
+ {0, "start" ,128,0,0,0,0,0,0,0,NULL,&atx[1],NULL,0,&atx[35]} ,
+ {0, "count" ,128,1,0,0,1,0,0,0,&avnx[2],&atx[1],NULL,0,NULL} ,
+ {0, "loc-set" ,128,4,0,0,0,0,0,0,NULL,&atx[14],&atx[37],0,&atx[38]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[17],NULL,0,NULL} ,
+ {0, "seq-loc" ,128,5,0,0,0,0,0,0,NULL,&atx[39],NULL,0,NULL} ,
+ {403, "Seq-loc" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[41]} ,
+ {315, "CHOICE" ,0,-1,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
+ {404, "Seq-annot" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[42]} ,
+ {405, "Seq-descr" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[43]} ,
+ {406, "Seq-literal" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[44]} ,
+ {407, "Seq-align" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[45]} ,
+ {408, "ID2S-Split-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[46],0,&atx[48]} ,
+ {0, "bioseqs-info" ,128,0,0,1,0,0,0,0,NULL,&atx[14],&atx[47],0,&atx[62]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[48],NULL,0,NULL} ,
+ {409, "ID2S-Bioseqs-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[49],0,&atx[64]} ,
+ {0, "info" ,128,0,0,0,0,0,0,0,NULL,&atx[50],NULL,0,&atx[61]} ,
+ {411, "ID2S-Bioseq-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[51],0,&atx[33]} ,
+ {0, "gap-count" ,128,0,0,1,0,0,0,0,NULL,&atx[1],NULL,0,&atx[52]} ,
+ {0, "seq-map-has-ref" ,128,1,0,1,0,0,0,0,NULL,&atx[53],NULL,0,&atx[54]} ,
+ {301, "BOOLEAN" ,0,1,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
+ {0, "sequence-split" ,128,2,0,1,0,0,0,0,NULL,&atx[55],NULL,0,NULL} ,
+ {413, "ID2S-Sequence-Split-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[56],0,&atx[68]} ,
+ {0, "block-size" ,128,0,0,0,0,0,0,0,NULL,&atx[1],NULL,0,&atx[57]} ,
+ {0, "chunk-start" ,128,1,0,0,0,0,0,0,NULL,&atx[0],NULL,0,&atx[58]} ,
+ {0, "chunk-blocks" ,128,2,0,0,0,0,0,0,NULL,&atx[60],&atx[59],0,NULL} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[1],NULL,0,NULL} ,
+ {312, "SEQUENCE OF" ,0,16,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} ,
+ {0, "bioseqs" ,128,1,0,0,0,0,0,0,NULL,&atx[33],NULL,0,NULL} ,
+ {0, "chunks" ,128,1,0,0,0,0,0,0,NULL,&atx[14],&atx[63],0,NULL} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[64],NULL,0,NULL} ,
+ {410, "ID2S-Chunk-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[65],0,&atx[50]} ,
+ {0, "id" ,128,0,0,0,0,0,0,0,NULL,&atx[0],NULL,0,&atx[66]} ,
+ {0, "content" ,128,1,0,0,0,0,0,0,NULL,&atx[14],&atx[67],0,NULL} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[68],NULL,0,NULL} ,
+ {414, "ID2S-Chunk-Content" ,1,0,0,0,0,0,0,0,NULL,&atx[40],&atx[69],0,&atx[70]} ,
+ {0, "seq-descr" ,128,0,0,0,0,0,0,0,NULL,&atx[70],NULL,0,&atx[76]} ,
+ {415, "ID2S-Seq-descr-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[71],0,&atx[78]} ,
+ {0, "type-mask" ,128,0,0,0,0,0,0,0,NULL,&atx[1],NULL,0,&atx[72]} ,
+ {0, "bioseqs" ,128,1,0,1,0,0,0,0,NULL,&atx[14],&atx[73],0,&atx[74]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[33],NULL,0,NULL} ,
+ {0, "bioseq-sets" ,128,2,0,1,0,0,0,0,NULL,&atx[14],&atx[75],0,NULL} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[33],NULL,0,NULL} ,
+ {0, "seq-annot" ,128,1,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[77]} ,
+ {0, "seq-assembly" ,128,2,0,0,0,0,0,0,NULL,&atx[78],NULL,0,&atx[81]} ,
+ {416, "ID2S-Seq-assembly-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[79],0,&atx[82]} ,
+ {0, "bioseqs" ,128,0,0,0,0,0,0,0,NULL,&atx[14],&atx[80],0,NULL} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[33],NULL,0,NULL} ,
+ {0, "seq-map" ,128,3,0,0,0,0,0,0,NULL,&atx[82],NULL,0,&atx[83]} ,
+ {417, "ID2S-Seq-map-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[17],NULL,0,&atx[84]} ,
+ {0, "seq-data" ,128,4,0,0,0,0,0,0,NULL,&atx[84],NULL,0,&atx[85]} ,
+ {418, "ID2S-Seq-data-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[17],NULL,0,&atx[86]} ,
+ {0, "seq-annot-place" ,128,5,0,0,0,0,0,0,NULL,&atx[86],NULL,0,NULL} ,
+ {419, "ID2S-Seq-annot-place-Info" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[87],0,&atx[10]} ,
+ {0, "name" ,128,0,0,1,0,0,0,0,NULL,&atx[4],NULL,0,&atx[88]} ,
+ {0, "bioseqs" ,128,1,0,1,0,0,0,0,NULL,&atx[14],&atx[89],0,&atx[90]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[33],NULL,0,NULL} ,
+ {0, "bioseq-sets" ,128,2,0,1,0,0,0,0,NULL,&atx[14],&atx[91],0,NULL} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[33],NULL,0,NULL} ,
+ {422, "ID2S-Chunk" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[93],0,&atx[95]} ,
+ {0, "data" ,128,0,0,0,0,0,0,0,NULL,&atx[14],&atx[94],0,NULL} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[95],NULL,0,NULL} ,
+ {423, "ID2S-Chunk-Data" ,1,0,0,0,0,0,0,0,NULL,&atx[15],&atx[96],0,&atx[20]} ,
+ {0, "id" ,128,0,0,0,0,0,0,0,NULL,&atx[40],&atx[97],0,&atx[99]} ,
+ {0, "bioseq-set" ,128,0,0,0,0,0,0,0,NULL,&atx[1],NULL,0,&atx[98]} ,
+ {0, "gi" ,128,1,0,0,0,0,0,0,NULL,&atx[1],NULL,0,NULL} ,
+ {0, "descrs" ,128,1,0,1,0,0,0,0,NULL,&atx[14],&atx[100],0,&atx[101]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[42],NULL,0,NULL} ,
+ {0, "annots" ,128,2,0,1,0,0,0,0,NULL,&atx[14],&atx[102],0,&atx[103]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[41],NULL,0,NULL} ,
+ {0, "assembly" ,128,3,0,1,0,0,0,0,NULL,&atx[14],&atx[104],0,&atx[105]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[44],NULL,0,NULL} ,
+ {0, "seq-map" ,128,4,0,1,0,0,0,0,NULL,&atx[60],&atx[106],0,&atx[107]} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[43],NULL,0,NULL} ,
+ {0, "seq-data" ,128,5,0,1,0,0,0,0,NULL,&atx[60],&atx[108],0,NULL} ,
+ {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[43],NULL,0,NULL} };
+
+static AsnModule ampx[1] = {
+ { "NCBI-Seq-split" , "seqsplit.h13",&atx[0],NULL,NULL,0,0} };
+
+static AsnValxNodePtr avn = avnx;
+static AsnTypePtr at = atx;
+static AsnModulePtr amp = ampx;
+
+
+
+/**************************************************
+*
+* Defines for Module NCBI-Seq-split
+*
+**************************************************/
+
+#define ID2S_CHUNK_ID &at[0]
+
+#define ID2S_SEQ_ANNOT_INFO &at[2]
+#define ID2S_SEQ_ANNOT_INFO_name &at[3]
+#define ID2S_SEQ_ANNOT_INFO_align &at[5]
+#define ID2S_SEQ_ANNOT_INFO_graph &at[7]
+#define ID2S_SEQ_ANNOT_INFO_feat &at[8]
+#define ID2S_SEQ_ANNOT_INFO_feat_E &at[9]
+#define ID2S_SEQ_ANNOT_INFO_seq_loc &at[16]
+
+#define ID2S_SPLIT_INFO &at[45]
+#define ID2S_SPLIT_INFO_bioseqs_info &at[46]
+#define ID2S_SPLIT_INFO_bioseqs_info_E &at[47]
+#define ID2S_SPLIT_INFO_chunks &at[62]
+#define ID2S_SPLIT_INFO_chunks_E &at[63]
+
+#define ID2S_BIOSEQS_INFO &at[48]
+#define ID2S_BIOSEQS_INFO_info &at[49]
+#define ID2S_BIOSEQS_INFO_bioseqs &at[61]
+
+#define ID2S_CHUNK_INFO &at[64]
+#define ID2S_CHUNK_INFO_id &at[65]
+#define ID2S_CHUNK_INFO_content &at[66]
+#define ID2S_CHUNK_INFO_content_E &at[67]
+
+#define ID2S_BIOSEQ_INFO &at[50]
+#define ID2S_BIOSEQ_INFO_gap_count &at[51]
+#define BIOSEQ_INFO_seq_map_has_ref &at[52]
+#define ID2S_BIOSEQ_INFO_sequence_split &at[54]
+
+#define ID2_ID_RANGE &at[33]
+#define ID2_ID_RANGE_start &at[34]
+#define ID2_ID_RANGE_count &at[35]
+
+#define ID2S_SEQUENCE_SPLIT_INFO &at[55]
+#define SEQUENCE_SPLIT_INFO_block_size &at[56]
+#define SPLIT_INFO_chunk_start &at[57]
+#define SPLIT_INFO_chunk_blocks &at[58]
+#define SPLIT_INFO_chunk_blocks_E &at[59]
+
+#define ID2S_CHUNK_CONTENT &at[68]
+#define ID2S_CHUNK_CONTENT_seq_descr &at[69]
+#define ID2S_CHUNK_CONTENT_seq_annot &at[76]
+#define ID2S_CHUNK_CONTENT_seq_assembly &at[77]
+#define ID2S_CHUNK_CONTENT_seq_map &at[81]
+#define ID2S_CHUNK_CONTENT_seq_data &at[83]
+#define CHUNK_CONTENT_seq_annot_place &at[85]
+
+#define ID2S_SEQ_DESCR_INFO &at[70]
+#define ID2S_SEQ_DESCR_INFO_type_mask &at[71]
+#define ID2S_SEQ_DESCR_INFO_bioseqs &at[72]
+#define ID2S_SEQ_DESCR_INFO_bioseqs_E &at[73]
+#define ID2S_SEQ_DESCR_INFO_bioseq_sets &at[74]
+#define SEQ_DESCR_INFO_bioseq_sets_E &at[75]
+
+#define ID2S_SEQ_ASSEMBLY_INFO &at[78]
+#define ID2S_SEQ_ASSEMBLY_INFO_bioseqs &at[79]
+#define SEQ_ASSEMBLY_INFO_bioseqs_E &at[80]
+
+#define ID2S_SEQ_MAP_INFO &at[82]
+
+#define ID2S_SEQ_DATA_INFO &at[84]
+
+#define ID2S_SEQ_ANNOT_PLACE_INFO &at[86]
+#define ID2S_SEQ_ANNOT_PLACE_INFO_name &at[87]
+#define SEQ_ANNOT_PLACE_INFO_bioseqs &at[88]
+#define SEQ_ANNOT_PLACE_INFO_bioseqs_E &at[89]
+#define ANNOT_PLACE_INFO_bioseq_sets &at[90]
+#define ANNOT_PLACE_INFO_bioseq_sets_E &at[91]
+
+#define ID2S_FEAT_TYPE_INFO &at[10]
+#define ID2S_FEAT_TYPE_INFO_type &at[11]
+#define ID2S_FEAT_TYPE_INFO_subtypes &at[12]
+#define ID2S_FEAT_TYPE_INFO_subtypes_E &at[13]
+
+#define ID2_SEQ_LOC &at[17]
+#define ID2_SEQ_LOC_gi_whole &at[18]
+#define ID2_SEQ_LOC_interval &at[19]
+#define ID2_SEQ_LOC_packed_ints &at[24]
+#define ID2_SEQ_LOC_gi_whole_range &at[32]
+#define ID2_SEQ_LOC_loc_set &at[36]
+#define ID2_SEQ_LOC_loc_set_E &at[37]
+#define ID2_SEQ_LOC_seq_loc &at[38]
+
+#define ID2S_CHUNK &at[92]
+#define ID2S_CHUNK_data &at[93]
+#define ID2S_CHUNK_data_E &at[94]
+
+#define ID2S_CHUNK_DATA &at[95]
+#define ID2S_CHUNK_DATA_id &at[96]
+#define ID2S_CHUNK_DATA_id_bioseq_set &at[97]
+#define ID2S_CHUNK_DATA_id_gi &at[98]
+#define ID2S_CHUNK_DATA_descrs &at[99]
+#define ID2S_CHUNK_DATA_descrs_E &at[100]
+#define ID2S_CHUNK_DATA_annots &at[101]
+#define ID2S_CHUNK_DATA_annots_E &at[102]
+#define ID2S_CHUNK_DATA_assembly &at[103]
+#define ID2S_CHUNK_DATA_assembly_E &at[104]
+#define ID2S_CHUNK_DATA_seq_map &at[105]
+#define ID2S_CHUNK_DATA_seq_map_E &at[106]
+#define ID2S_CHUNK_DATA_seq_data &at[107]
+#define ID2S_CHUNK_DATA_seq_data_E &at[108]
+
+#define ID2_INTERVAL &at[20]
+#define ID2_INTERVAL_gi &at[21]
+#define ID2_INTERVAL_start &at[22]
+#define ID2_INTERVAL_length &at[23]
+
+#define ID2_PACKED_SEQ_INTS &at[25]
+#define ID2_PACKED_SEQ_INTS_gi &at[26]
+#define ID2_PACKED_SEQ_INTS_intervals &at[27]
+#define ID2_PACKED_SEQ_INTS_intervals_E &at[28]
+
+#define ID2_SEQ_RANGE &at[29]
+#define ID2_SEQ_RANGE_start &at[30]
+#define ID2_SEQ_RANGE_length &at[31]
diff --git a/network/medarch/client/medarch.c b/network/medarch/client/medarch.c
index 7a683bc8..3c686c24 100644
--- a/network/medarch/client/medarch.c
+++ b/network/medarch/client/medarch.c
@@ -29,7 +29,7 @@
*
* Version Creation Date: 03/31/93
*
-* $Revision: 6.0 $
+* $Revision: 6.1 $
*
* File Description:
* API for Medline Archive service
@@ -53,6 +53,9 @@
*
* RCS Modification History:
* $Log: medarch.c,v $
+* Revision 6.1 2004/04/01 13:43:07 lavr
+* Spell "occurred", "occurrence", and "occurring"
+*
* Revision 6.0 1997/08/25 18:35:40 madden
* Revision changed to 6.0
*
@@ -1110,7 +1113,7 @@ ValNodePtr s_MedArchGetMriPmids (
This function call MedArch server and sends accession/xref code, it recives
list of Medline IDs. plAccNum is an optional argument in accordance with
Medline-si definition. Set it to NULL if accession code is unknown.
- It returns NULL if there are no entries found or if some error occured.
+ It returns NULL if there are no entries found or if some error occurred.
-*/
/******************************************************************************/
static
@@ -1154,7 +1157,7 @@ ValNodePtr s_MedArchGetAccUids (
list of PubMed IDs.
plAccNum is an optional argument in accordance with
Medline-si definition. Set it to NULL if accession code is unknown.
- It returns NULL if there are no entries found or if some error occured.
+ It returns NULL if there are no entries found or if some error occurred.
-*/
/******************************************************************************/
static
@@ -1979,7 +1982,7 @@ ValNodePtr
Server will return list of articles(MuId's) that are present in this issue.
plAccNum is an optional argument in accordance with
Medline-si definition. Set it to NULL if accession code is unknown.
- It returns NULL if there are no entries found or if some error occured.-*/
+ It returns NULL if there are no entries found or if some error occurred.-*/
/******************************************************************************/
ValNodePtr
/*FCN*/MedArchGetAccUids (
@@ -2019,7 +2022,7 @@ ValNodePtr
Server will return list of PmIds that are present in this issue.
plAccNum is an optional argument in accordance with
Medline-si definition. Set it to NULL if accession code is unknown.
- It returns NULL if there are no entries found or if some error occured.-*/
+ It returns NULL if there are no entries found or if some error occurred.-*/
/******************************************************************************/
ValNodePtr
/*FCN*/MedArchGetAccPmids (
diff --git a/network/medarch/client/medutil.c b/network/medarch/client/medutil.c
index 1ebed5c2..fc6b5199 100644
--- a/network/medarch/client/medutil.c
+++ b/network/medarch/client/medutil.c
@@ -28,7 +28,7 @@
*
* Version Creation Date: 8/31/93
*
-* $Revision: 6.10 $
+* $Revision: 6.14 $
*
* File Description: Medline Utilities for MedArch
* Assumes user calls MedArchInit and Fini
@@ -44,6 +44,25 @@
*
* RCS Modification History:
* $Log: medutil.c,v $
+* Revision 6.14 2004/03/19 18:32:03 bazhin
+* One more patch related to the previous one.
+*
+* Revision 6.13 2004/03/19 14:53:18 bazhin
+* Added function PropogateInPress(), which is called from FixPubEquiv().
+* It sets Imprint.prepub value to "in-press" if input Cit-art was flagged
+* as "in-press", but had Medline or/and Pubmed id(s) and successful lookup
+* returned Cit-art with no article references, such as volume and page
+* numbers.
+*
+* Revision 6.12 2004/03/17 16:59:35 bazhin
+* Slight modification in ten_authors() function. If the number of input
+* authors greater than 10 and number of MedArch ones less or equal 11,
+* or input has more than 25 and MedArch has less or equal 26, then
+* it will take input set instead of MedArch one.
+*
+* Revision 6.11 2004/03/16 18:53:37 bazhin
+* Now does not ignore in-press'ed Cit-arts for lookup.
+*
* Revision 6.10 2003/10/01 13:08:33 bazhin
* Modified ten_authors() function to handle consortiums properly.
*
@@ -334,6 +353,7 @@ Boolean ten_authors(CitArtPtr art, CitArtPtr art_tmp)
CharPtr newcon;
Int2 num;
Int2 numnew;
+ Int2 numtmp;
Int2 i;
Int2 match;
@@ -367,14 +387,14 @@ Boolean ten_authors(CitArtPtr art, CitArtPtr art_tmp)
oldcon = aup->name->data;
}
- for(newcon = NULL, v = art_tmp->authors->names; v != NULL; v = v->next)
+ newcon = NULL;
+ for(numtmp = 0, v = art_tmp->authors->names; v != NULL; v = v->next)
{
aup = v->data.ptrvalue;
- if(aup->name->choice == 5)
- {
+ if(aup->name->choice == 2)
+ numtmp++;
+ else if(aup->name->choice == 5)
newcon = aup->name->data;
- break;
- }
}
if(oldcon != NULL)
@@ -435,7 +455,7 @@ Boolean ten_authors(CitArtPtr art, CitArtPtr art_tmp)
if(i > 3 * match)
return(FALSE);
- if(num > 10 || numnew == 0)
+ if(numtmp == 0 || (num > 10 && numtmp < 12) || (num > 25 && numtmp < 27))
{
AuthListFree(art_tmp->authors);
art_tmp->authors = art->authors;
@@ -677,6 +697,58 @@ ValNodePtr SplitMedlineEntry(MedlineEntryPtr mep)
return uid;
}
+/**********************************************************/
+static Boolean if_inpress_set(CitArtPtr cap)
+{
+ CitJourPtr jour;
+ CitBookPtr book;
+
+ if(cap == NULL || cap->fromptr == NULL)
+ return(FALSE);
+
+ if(cap->from == 1)
+ {
+ jour = cap->fromptr;
+ if(jour->imp != NULL && jour->imp->prepub == 2)
+ return(TRUE);
+ }
+ else if(cap->from == 2 || cap->from == 3)
+ {
+ book = cap->fromptr;
+ if(book->imp != NULL && book->imp->prepub == 2)
+ return(TRUE);
+ }
+ return(FALSE);
+}
+
+/**********************************************************/
+static void PropogateInPress(Boolean inpress, ValNodePtr vnp)
+{
+ CitJourPtr jour;
+ CitBookPtr book;
+ CitArtPtr cap;
+
+ if(inpress == FALSE || vnp == NULL || vnp->data.ptrvalue == NULL)
+ return;
+
+ cap = vnp->data.ptrvalue;
+ if(in_press(cap) == FALSE || cap->fromptr == NULL)
+ return;
+
+ if(cap->from == 1)
+ {
+ jour = cap->fromptr;
+ if(jour->imp != NULL)
+ jour->imp->prepub = 2;
+ }
+ else if(cap->from == 2 || cap->from == 3)
+ {
+ book = cap->fromptr;
+ if(book->imp != NULL)
+ book->imp->prepub = 2;
+ }
+}
+
/*****************************************************************************
*
* FixPubEquiv()
@@ -689,9 +761,20 @@ ValNodePtr FixPubEquiv(ValNodePtr pube, FindPubOptionPtr fpop)
Int2 muidctr = 0, pmidctr = 0, citartctr = 0, mepctr = 0, otherctr = 0;
Int4 muid = 0, oldmuid=0, pmid = 0, oldpmid=0;
CitArtPtr cit;
+ Boolean got;
+ Boolean inpress;
if (pube == NULL) return NULL;
+ for(got = FALSE, tmp = pube; tmp != NULL; tmp = tmp->next)
+ {
+ if(tmp->choice == PUB_Muid || tmp->choice == PUB_PMid)
+ {
+ got = TRUE;
+ break;
+ }
+ }
+
for (tmp = pube; tmp != NULL; tmp = next)
{
next = tmp->next;
@@ -722,7 +805,7 @@ ValNodePtr FixPubEquiv(ValNodePtr pube, FindPubOptionPtr fpop)
break;
case PUB_Article:
cit = tmp->data.ptrvalue;
- if (cit->from == 2 || in_press(cit)) {
+ if (cit->from == 2 || (in_press(cit) && got == FALSE)) {
otherctr++;
if (otherptr == NULL)
otherptr = tmp;
@@ -892,6 +975,7 @@ ValNodePtr FixPubEquiv(ValNodePtr pube, FindPubOptionPtr fpop)
citartptr->next = PubEquivFree(citartptr->next);
}
+ inpress = if_inpress_set(citartptr->data.ptrvalue);
fpop->lookups_attempted++;
muid = MedArchCitMatch(citartptr);
if (muid != 0) /* success */
@@ -933,6 +1017,7 @@ ValNodePtr FixPubEquiv(ValNodePtr pube, FindPubOptionPtr fpop)
tmp->next = new;
PubFree(citartptr);
+ citartptr = new;
} else {
print_pub(citartptr, FALSE, TRUE, muid);
PubFree(new);
@@ -979,6 +1064,7 @@ ValNodePtr FixPubEquiv(ValNodePtr pube, FindPubOptionPtr fpop)
tmp->next = citartptr;
MedlineToISO(citartptr);
}
+ PropogateInPress(inpress, citartptr);
return pube;
}
@@ -1024,6 +1110,7 @@ ValNodePtr FixPubEquiv(ValNodePtr pube, FindPubOptionPtr fpop)
tmp->next = new;
PubFree(citartptr);
+ citartptr = new;
} else {
print_pub(citartptr, FALSE, TRUE, pmid);
PubFree(new);
@@ -1070,6 +1157,7 @@ ValNodePtr FixPubEquiv(ValNodePtr pube, FindPubOptionPtr fpop)
tmp->next = citartptr;
MedlineToISO(citartptr);
}
+ PropogateInPress(inpress, citartptr);
return pube;
}
@@ -1080,6 +1168,7 @@ ValNodePtr FixPubEquiv(ValNodePtr pube, FindPubOptionPtr fpop)
tmp2->next = citartptr;
if (muidptr != NULL) /* ditch the mismatched muid */
PubFree(muidptr);
+ PropogateInPress(inpress, citartptr);
return pube;
}
diff --git a/network/nsclilib/ni_msg.c b/network/nsclilib/ni_msg.c
index 326392e7..322f0b5d 100644
--- a/network/nsclilib/ni_msg.c
+++ b/network/nsclilib/ni_msg.c
@@ -29,7 +29,7 @@
*
* Version Creation Date: 1/1/92
*
-* $Revision: 6.3 $
+* $Revision: 6.4 $
*
* File Description:
* This file consists mostly of functions for creating, destroying, reading,
@@ -138,6 +138,9 @@
*
* RCS Modification History:
* $Log: ni_msg.c,v $
+* Revision 6.4 2004/04/01 13:43:07 lavr
+* Spell "occurred", "occurrence", and "occurring"
+*
* Revision 6.3 2002/12/17 23:01:36 kans
* support for OS_UNIX_DARWIN for Mach-O executables (RGS)
*
@@ -3914,7 +3917,7 @@ NLM_EXTERN Int2 LIBCALLBACK NI_AsnRead(Pointer p, CharPtr buf, Uint2 len)
* It is relatively unlikely that "writing" will block, thus
* causing the calling application to block. For "writing" to
* block, there would need to be flow control imposed in the
- * TCP/IP protocol suite, which is an unlikely occurance when
+ * TCP/IP protocol suite, which is an unlikely occurrence when
* passing small quantities of data.
*/
diff --git a/network/nsclilib/ni_service.c b/network/nsclilib/ni_service.c
index d56b8511..ed78575b 100644
--- a/network/nsclilib/ni_service.c
+++ b/network/nsclilib/ni_service.c
@@ -1,4 +1,4 @@
-/* $RCSfile: ni_service.c,v $ $Revision: 6.16 $ $Date: 2003/10/27 14:10:49 $
+/* $RCSfile: ni_service.c,v $ $Revision: 6.18 $ $Date: 2004/02/23 17:00:39 $
* ==========================================================================
*
* PUBLIC DOMAIN NOTICE
@@ -30,6 +30,12 @@
*
* --------------------------------------------------------------------------
* $Log: ni_service.c,v $
+ * Revision 6.18 2004/02/23 17:00:39 lavr
+ * Fix n_written variable name typo
+ *
+ * Revision 6.17 2004/02/23 15:30:21 lavr
+ * New (last) parameter "how" added in CONN_Write() API call
+ *
* Revision 6.16 2003/10/27 14:10:49 lavr
* Better flow control in s_AsnWrite()
*
@@ -124,20 +130,8 @@ static Int2 LIBCALLBACK s_AsnRead(Pointer p, CharPtr buf, Uint2 len)
static Int2 LIBCALLBACK s_AsnWrite(Pointer p, CharPtr buf, Uint2 len)
{
- CONN conn = (CONN) p;
- size_t n_written = 0;
- for (;;) {
- size_t x_written;
- EIO_Status status = CONN_Write(conn, buf, len, &x_written);
- n_written += x_written;
- if (len == x_written || status != eIO_Success ||
- CONN_Wait(conn, eIO_Write,
- CONN_GetTimeout(conn, eIO_Write)) != eIO_Success) {
- break;
- }
- buf += x_written;
- len -= x_written;
- }
+ size_t n_written;
+ CONN_Write((CONN) p, buf, len, &n_written, eIO_WritePersist);
return (Int2) n_written;
}
diff --git a/network/suggest/client/suggapi.c b/network/suggest/client/suggapi.c
index c17db3cb..5a2ff98d 100644
--- a/network/suggest/client/suggapi.c
+++ b/network/suggest/client/suggapi.c
@@ -29,7 +29,7 @@
*
* Version Creation Date: 08/14/95
*
-* $Revision: 6.0 $
+* $Revision: 6.1 $
*
* File Description:
* Implementation of API for Suggest service
@@ -210,7 +210,7 @@ SuggestFini(void)
*
* Return:
* pointer to SeqAnnot structure which will contain the result of
- * the processing or NULL if error occured.
+ * the processing or NULL if error occurred.
*
* Note:
* SuggestResponse structure can contain an error from Suggest Server, so
@@ -250,7 +250,7 @@ SeqAnnotPtr SuggestFindIntervals(SuggestIntervalsPtr pIntervals)
return NULL;
if (pResp->choice == SuggestResponse_error) {
- /* Error occured on server's side, report it
+ /* Error occurred on server's side, report it
*/
ErrorFromServer(pResp->data.ptrvalue);
SuggestResponseFree(pResp);
diff --git a/network/suggest/server/suggsrv.c b/network/suggest/server/suggsrv.c
index 7e74ad45..b31545ac 100644
--- a/network/suggest/server/suggsrv.c
+++ b/network/suggest/server/suggsrv.c
@@ -29,7 +29,7 @@
*
* Version Creation Date: 08/14/95
*
-* $Revision: 6.0 $
+* $Revision: 6.1 $
*
* File Description:
* Implementation of Suggest server. Here it is only server specific
@@ -47,6 +47,9 @@
*
* RCS Modification History:
* $Log: suggsrv.c,v $
+* Revision 6.1 2004/04/01 13:43:07 lavr
+* Spell "occurred", "occurrence", and "occurring"
+*
* Revision 6.0 1997/08/25 18:40:59 madden
* Revision changed to 6.0
*
@@ -188,7 +191,7 @@ main(int argc, char *argv[])
* pAsnIoOut - output file to which
*
* Return:
- * FALSE if nothing more to process or error occured and farther
+ * FALSE if nothing more to process or error occurred and farther
* processing is not possible, otherwise TRUE.
*
\*****************************************************************************/
@@ -204,7 +207,7 @@ ServeClient(AsnIoPtr pAsnIn, AsnIoPtr pAsnOut)
SuggestResponsePtr pResp;
SuggestIntervalsPtr pSIntervals;
- /* Encountering EOF on reading is a "normal" occurence,
+ /* Encountering EOF on reading is a "normal" occurrence,
* and does not merit an error message
*/
ErrGetOpts(&iErrAct, NULL);
diff --git a/network/taxon1/taxon2/tc2proc.c b/network/taxon1/taxon2/tc2proc.c
index 91632731..0b2ca9f1 100644
--- a/network/taxon1/taxon2/tc2proc.c
+++ b/network/taxon1/taxon2/tc2proc.c
@@ -1,5 +1,5 @@
/*----------------*/
-/* $Id: tc2proc.c,v 1.33 2003/07/29 20:06:05 soussov Exp $ */
+/* $Id: tc2proc.c,v 1.34 2004/02/25 19:21:21 soussov Exp $ */
/*----------------*/
#include <stdlib.h>
@@ -316,31 +316,37 @@ int tax1_getChildren(Int4 id_tax, Int4** ids_out)
/* find last common ancestor for two nodes */
Int4 tax1_join(Int4 taxid1, Int4 taxid2)
{
- TreeNodeId nid;
- Int4 aid= 0;
- TreeCursorPtr cursor1= tree_openCursor(tax_tree, NULL, NULL);
- TreeCursorPtr cursor2= tree_openCursor(tax_tree, NULL, NULL);
-
- if((cursor1 == NULL) || (cursor2 == NULL) ||
- (!tc2_toNode(cursor1, taxid1)) || (!tc2_toNode(cursor2, taxid2))) {
- if(cursor1 != NULL) tree_closeCursor(cursor1);
- if(cursor2 != NULL) tree_closeCursor(cursor2);
- return -1;
+ if(taxid1 == taxid2) {
+ taxid2= getLiveId(taxid1);
+ return (taxid2 > 0)? taxid2 : -1;
}
-
- nid= tree_getAncestor(cursor1, cursor2);
-
- if(tree_toNode(cursor1, nid)) {
- TXC_TreeNodePtr tnp;
- Uint2 s;
+ else {
+ TreeNodeId nid;
+ Int4 aid= 0;
+ TreeCursorPtr cursor1= tree_openCursor(tax_tree, NULL, NULL);
+ TreeCursorPtr cursor2= tree_openCursor(tax_tree, NULL, NULL);
+
+ if((cursor1 == NULL) || (cursor2 == NULL) ||
+ (!tc2_toNode(cursor1, taxid1)) || (!tc2_toNode(cursor2, taxid2))) {
+ if(cursor1 != NULL) tree_closeCursor(cursor1);
+ if(cursor2 != NULL) tree_closeCursor(cursor2);
+ return -1;
+ }
- tnp= tree_getNodeData(cursor1, &s);
- if(tnp != NULL) aid= tnp->tax_id;
+ nid= tree_getAncestor(cursor1, cursor2);
+
+ if(tree_toNode(cursor1, nid)) {
+ TXC_TreeNodePtr tnp;
+ Uint2 s;
+
+ tnp= tree_getNodeData(cursor1, &s);
+ if(tnp != NULL) aid= tnp->tax_id;
+ }
+
+ tree_closeCursor(cursor1);
+ tree_closeCursor(cursor2);
+ return aid;
}
-
- tree_closeCursor(cursor1);
- tree_closeCursor(cursor2);
- return aid;
}
diff --git a/network/vibnet/trmlst.c b/network/vibnet/trmlst.c
index 24cdf201..664a01ed 100644
--- a/network/vibnet/trmlst.c
+++ b/network/vibnet/trmlst.c
@@ -29,7 +29,7 @@
*
* Version Creation Date: 8/5/96
*
-* $Revision: 6.25 $
+* $Revision: 6.26 $
*
* File Description:
*
@@ -2489,9 +2489,9 @@ static Boolean InsertAdvText (TermFormPtr tfp, CharPtr str)
CharPtr finalstr;
Int2 i;
Boolean retval = TRUE;
- Int2 begin;
- Int2 end;
- Int2 curstrLen;
+ Int4 begin;
+ Int4 end;
+ Int4 curstrLen;
Char textObjectReturnStr [3];
Int2 strLen;
ValNodePtr head = NULL, vnp;
diff --git a/network/wwwblast/.WWWBLAST_VERSION b/network/wwwblast/.WWWBLAST_VERSION
deleted file mode 100644
index bda8fbec..00000000
--- a/network/wwwblast/.WWWBLAST_VERSION
+++ /dev/null
@@ -1 +0,0 @@
-2.2.6
diff --git a/network/wwwblast/Src/wwwblast.c b/network/wwwblast/Src/wwwblast.c
index 504c6527..458858e9 100644
--- a/network/wwwblast/Src/wwwblast.c
+++ b/network/wwwblast/Src/wwwblast.c
@@ -1,4 +1,4 @@
-/* $Id: wwwblast.c,v 1.13 2004/01/16 17:35:20 dondosha Exp $
+/* $Id: wwwblast.c,v 1.15 2004/05/03 15:11:46 dondosha Exp $
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
@@ -29,12 +29,18 @@
*
* Initial Creation Date: 03/15/2000
*
-* $Revision: 1.13 $
+* $Revision: 1.15 $
*
* File Description:
* Standalone WWW Blast CGI program.
*
* $Log: wwwblast.c,v $
+* Revision 1.15 2004/05/03 15:11:46 dondosha
+* Added support for masking query in XML output
+*
+* Revision 1.14 2004/03/02 16:44:11 dondosha
+* Do not print closing </form> for XML output
+*
* Revision 1.13 2004/01/16 17:35:20 dondosha
* Fixed mouseover problems
*
@@ -287,7 +293,9 @@ TraditionalBlastReportEngineWithImage(SeqLocPtr slp, BioseqPtr bsp, BlastNet3Hpt
SeqAlignPtr seqalign = NULL, sap, next_seqalign;
SeqAnnotPtr seqannot=NULL;
TxDfDbInfoPtr tx_dbinfo=NULL, tx_dbinfo_head;
- ValNodePtr mask_loc, mask_loc_start, other_returns, error_returns, vnp, vnp1=NULL;
+ ValNodePtr mask_loc = NULL, mask_loc_start, next_mask_loc = NULL;
+ SeqLocPtr mask_slp = NULL;
+ ValNodePtr other_returns, error_returns, vnp, vnp1=NULL;
Uint1 align_type;
Uint1 f_order[FEATDEF_ANY], g_order[FEATDEF_ANY];
/* Variables for multiple query output */
@@ -332,7 +340,7 @@ TraditionalBlastReportEngineWithImage(SeqLocPtr slp, BioseqPtr bsp, BlastNet3Hpt
BlastErrorPrintExtra(error_returns, TRUE, stdout);
- mask_loc = NULL;
+ mask_loc = next_mask_loc = NULL;
matrix = NULL;
txmatrix = NULL;
for (vnp=other_returns; vnp; vnp = vnp->next) {
@@ -365,14 +373,15 @@ TraditionalBlastReportEngineWithImage(SeqLocPtr slp, BioseqPtr bsp, BlastNet3Hpt
case SEQLOC_MASKING_MINUS1:
case SEQLOC_MASKING_MINUS2:
case SEQLOC_MASKING_MINUS3:
- if (!options->is_megablast_search)
- ValNodeAddPointer(&mask_loc, vnp->choice, vnp->data.ptrvalue);
+ ValNodeAddPointer(&mask_loc, vnp->choice, vnp->data.ptrvalue);
break;
default:
break;
}
}
+ mask_loc_start = mask_loc;
+
/* If results come as alignment endpoints only from Mega BLAST */
if (mb_results) {
MegaBlastHitPtr mb_hit = mb_results->mbhits, next_hit;
@@ -415,23 +424,22 @@ TraditionalBlastReportEngineWithImage(SeqLocPtr slp, BioseqPtr bsp, BlastNet3Hpt
if (!options->is_megablast_search)
next_seqalign = NULL;
else {
+ SeqIdPtr seqid = TxGetQueryIdFromSeqAlign(seqalign);
sap = seqalign;
while (sap != NULL) {
if (sap->next != NULL) {
- dsp = (DenseSegPtr) (sap->segs);
- next_dsp = (DenseSegPtr) (sap->next->segs);
-
- if (SeqIdComp(dsp->ids, next_dsp->ids) != SIC_YES) {
+ if (SeqIdComp(seqid, TxGetQueryIdFromSeqAlign(sap->next)
+ != SIC_YES)) {
next_seqalign = sap->next;
sap->next = NULL;
}
- } else
+ } else {
next_seqalign = NULL;
+ }
sap = sap->next;
}
-
- dsp = (DenseSegPtr) (seqalign->segs);
- while (tmp_slp && SeqIdComp(dsp->ids, SeqLocId(tmp_slp)) != SIC_YES)
+ /* Find this query's SeqLoc and Bioseq */
+ while (tmp_slp && SeqIdComp(seqid, SeqLocId(tmp_slp)) != SIC_YES)
tmp_slp = tmp_slp->next;
if (tmp_slp == NULL) /* Should never happen */
break;
@@ -441,13 +449,28 @@ TraditionalBlastReportEngineWithImage(SeqLocPtr slp, BioseqPtr bsp, BlastNet3Hpt
AcknowledgeBlastQuery(bsp, 70, stdout, FALSE, TRUE);
free_buff();
BioseqUnlock(bsp);
+
+ /* Separate the mask locations list for this query. */
+ if (mask_loc) {
+ mask_slp = (SeqLocPtr) mask_loc->data.ptrvalue;
+ while (SeqIdComp(SeqLocId(mask_slp), seqid) != SIC_YES) {
+ mask_loc = mask_loc->next;
+ if (!mask_loc)
+ break;
+ mask_slp = (SeqLocPtr) mask_loc->data.ptrvalue;
+ }
+ if (mask_loc) {
+ next_mask_loc = mask_loc->next;
+ mask_loc->next = NULL;
+ }
+ }
}
if(theInfo->xml_output) {
printf("<PRE>");
BXMLPrintOutput(xml_aip, seqalign, options,
program, database,
- bsp, other_returns, 0, NULL);
+ bsp, other_returns, 0, NULL, mask_loc);
AsnIoReset(xml_aip);
printf("</PRE>");
@@ -533,8 +556,16 @@ TraditionalBlastReportEngineWithImage(SeqLocPtr slp, BioseqPtr bsp, BlastNet3Hpt
ObjMgrFreeCache(0);
} /* If else xml_output */
- if (options->is_megablast_search)
+ if (options->is_megablast_search) {
tmp_slp = tmp_slp->next;
+
+ /* Reconnect the mask locations */
+ if (next_mask_loc) {
+ mask_loc->next = next_mask_loc;
+ mask_loc = next_mask_loc;
+ }
+ }
+
if (seqannot)
seqannot = SeqAnnotFree(seqannot);
seqalign = next_seqalign;
@@ -555,7 +586,7 @@ TraditionalBlastReportEngineWithImage(SeqLocPtr slp, BioseqPtr bsp, BlastNet3Hpt
BXMLPrintOutput(xml_aip, NULL,
options, program, database,
- bsp, other_returns, 0, message);
+ bsp, other_returns, 0, message, NULL);
if (error_returns != NULL) {
MemFree(error_msg->msg);
@@ -575,10 +606,8 @@ TraditionalBlastReportEngineWithImage(SeqLocPtr slp, BioseqPtr bsp, BlastNet3Hpt
if (txmatrix)
txmatrix = TxMatrixDestruct(txmatrix);
- mask_loc_start = mask_loc;
- while (mask_loc) {
+ for (mask_loc = mask_loc_start; mask_loc; mask_loc = mask_loc->next) {
SeqLocSetFree(mask_loc->data.ptrvalue);
- mask_loc = mask_loc->next;
}
ValNodeFree(mask_loc_start);
@@ -784,7 +813,9 @@ AppendMegaBlastHit(VoidPtr ptr)
Boolean WWWBlastDoSearch(WWWBlastInfoPtr theInfo)
{
SeqAlignPtr seqalign = NULL;
- ValNodePtr mask_loc, mask_loc_start, vnp, other_returns, error_returns;
+ ValNodePtr mask_loc = NULL, mask_loc_start, next_mask_loc = NULL;
+ SeqLocPtr mask_slp = NULL;
+ ValNodePtr vnp, other_returns, error_returns;
TxDfDbInfoPtr dbinfo=NULL, dbinfo_head;
BLAST_KarlinBlkPtr ka_params=NULL, ka_params_gap=NULL;
BLAST_MatrixPtr matrix;
@@ -906,8 +937,7 @@ Boolean WWWBlastDoSearch(WWWBlastInfoPtr theInfo)
case SEQLOC_MASKING_MINUS1:
case SEQLOC_MASKING_MINUS2:
case SEQLOC_MASKING_MINUS3:
- if (!is_megablast)
- ValNodeAddPointer(&mask_loc, vnp->choice, vnp->data.ptrvalue);
+ ValNodeAddPointer(&mask_loc, vnp->choice, vnp->data.ptrvalue);
break;
case BlastResponse_mbalign:
mb_results = (MegaBlastResultsPtr) vnp->data.ptrvalue;
@@ -946,17 +976,35 @@ Boolean WWWBlastDoSearch(WWWBlastInfoPtr theInfo)
ReadDBBioseqSetDbGeneticCode(theInfo->options->db_genetic_code);
query_number = 1;
+ mask_loc_start = mask_loc;
+
for (index=0; !done; index++) {
if (is_megablast)
seqalign = seqalignp[index];
else
done = TRUE;
if (seqalign) {
+ /* Separate the mask locations list for this query, if there
+ are multiple queries. */
+ if (mask_loc) {
+ SeqIdPtr seqid = TxGetQueryIdFromSeqAlign(seqalign);
+ mask_slp = (SeqLocPtr) mask_loc->data.ptrvalue;
+ while (SeqIdComp(SeqLocId(mask_slp), seqid) != SIC_YES) {
+ mask_loc = mask_loc->next;
+ if (!mask_loc)
+ break;
+ mask_slp = (SeqLocPtr) mask_loc->data.ptrvalue;
+ }
+ if (mask_loc) {
+ next_mask_loc = mask_loc->next;
+ mask_loc->next = NULL;
+ }
+ }
if(theInfo->xml_output) {
if (!is_megablast) {
BXMLPrintOutput(xml_aip, seqalign, options,
theInfo->program, theInfo->database,
- theInfo->fake_bsp, other_returns, 0, NULL);
+ theInfo->fake_bsp, other_returns, 0, NULL, mask_loc);
AsnIoReset(xml_aip);
} else {
IterationPtr iterp;
@@ -965,7 +1013,7 @@ Boolean WWWBlastDoSearch(WWWBlastInfoPtr theInfo)
iterp = BXMLBuildOneQueryIteration(seqalign,
NULL, FALSE,
!options->gapped_calculation, index,
- NULL, bsp);
+ NULL, bsp, mask_loc);
IterationAsnWrite(iterp, mbxp->aip, mbxp->atp);
AsnIoFlush(mbxp->aip);
IterationFree(iterp);
@@ -1084,6 +1132,11 @@ Boolean WWWBlastDoSearch(WWWBlastInfoPtr theInfo)
ObjMgrClearHold();
ObjMgrFreeCache(0);
}
+ /* Reconnect the mask locations, in case of multiple queries */
+ if (next_mask_loc) {
+ mask_loc->next = next_mask_loc;
+ mask_loc = next_mask_loc;
+ }
} else if (!is_megablast) { /* while(seqalign) */
/* seqalign == NULL */
@@ -1102,7 +1155,7 @@ Boolean WWWBlastDoSearch(WWWBlastInfoPtr theInfo)
options, theInfo->program,
theInfo->database,
theInfo->fake_bsp, other_returns,
- 0, message);
+ 0, message, NULL);
if (error_returns != NULL) {
MemFree(error_msg->msg);
@@ -1121,9 +1174,10 @@ Boolean WWWBlastDoSearch(WWWBlastInfoPtr theInfo)
if (!query_slp)
done = TRUE;
}
- if(!theInfo->xml_output && seqannot != NULL)
+ if(!theInfo->xml_output) {
seqannot = SeqAnnotFree(seqannot);
- fprintf(stdout, "</form>\n");
+ fprintf(stdout, "</form>\n");
+ }
}
matrix = BLAST_MatrixDestruct(matrix);
@@ -1190,10 +1244,8 @@ Boolean WWWBlastDoSearch(WWWBlastInfoPtr theInfo)
MemFree(params_buffer);
free_buff();
- mask_loc_start = mask_loc;
- while (mask_loc) {
+ for (mask_loc = mask_loc_start; mask_loc; mask_loc = mask_loc->next) {
SeqLocSetFree(mask_loc->data.ptrvalue);
- mask_loc = mask_loc->next;
}
ValNodeFree(mask_loc_start);
diff --git a/network/wwwblast/readme.html b/network/wwwblast/readme.html
index c23b298f..450ce9b9 100644
--- a/network/wwwblast/readme.html
+++ b/network/wwwblast/readme.html
@@ -1,4 +1,4 @@
-<!-- $Id: readme.html,v 1.11 2004/01/30 22:29:05 dondosha Exp $ -->
+<!-- $Id: readme.html,v 1.12 2004/05/03 15:47:03 dondosha Exp $ -->
<HTML>
<HEAD>
<TITLE>Introduction to the Standalone WWW Blast server</TITLE>
@@ -35,6 +35,13 @@
<TABLE BORDER=1>
<TR VALIGN=top>
+<TD> May 10, 2004
+<TD>
+<UL>
+<LI> XML output brought in sync with the text output, masking filtered locations in query sequences.
+</UL>
+</TR>
+<TR VALIGN=top>
<TD> February 2, 2004
<TD>
<UL>
diff --git a/network/wwwblast/readme.txt b/network/wwwblast/readme.txt
index 690f1dd8..1e9fecae 100644
--- a/network/wwwblast/readme.txt
+++ b/network/wwwblast/readme.txt
@@ -56,6 +56,11 @@ executables are: wwwblast.c, wwwbutl.c, psiblast.c, wblast2.c.
What's new in this revision?
+May 10, 2004
+
+ * XML output brought in sync with the text output, masking filtered
+locations in query sequences.
+
February 2, 2004
* All source code moved to the NCBI C toolkit.