diff options
Diffstat (limited to 'algo/blast/api/blast_seqalign.h')
| -rw-r--r-- | algo/blast/api/blast_seqalign.h | 15 |
1 files changed, 6 insertions, 9 deletions
diff --git a/algo/blast/api/blast_seqalign.h b/algo/blast/api/blast_seqalign.h index d78377dd..c6d009d7 100644 --- a/algo/blast/api/blast_seqalign.h +++ b/algo/blast/api/blast_seqalign.h @@ -1,4 +1,4 @@ -/* $Id: blast_seqalign.h,v 1.13 2004/03/12 15:18:53 coulouri Exp $ +/* $Id: blast_seqalign.h,v 1.16 2004/06/08 17:47:24 dondosha Exp $ * =========================================================================== * * PUBLIC DOMAIN NOTICE @@ -32,7 +32,7 @@ Author: Ilya Dondoshansky Contents: Functions to convert BLAST results to the SeqAlign form ****************************************************************************** - * $Revision: 1.13 $ + * $Revision: 1.16 $ * */ #ifndef __BLAST_SEQALIGN__ #define __BLAST_SEQALIGN__ @@ -55,17 +55,14 @@ extern "C" { * @param program_number Type of BLAST program [in] * @param results The BLAST results [in] * @param query_slp List of query SeqLoc's [in] - * @param bssp Pointer to the BLAST database wrapper structure [in] - * @param subject_slp Subject SeqLoc (for two sequences search) [in] - * @param score_options Scoring options block [in] - * @param sbp Scoring and statistical information [in] + * @param seq_src Pointer to the BLAST database wrapper structure [in] * @param is_gapped Is this a gapped alignment search? [in] + * @param is_ooframe Is this a search with out-of-frame gapping? [in] * @param head_seqalign List of SeqAlign's [out] */ Int2 BLAST_ResultsToSeqAlign(Uint1 program_number, BlastHSPResults* results, - SeqLocPtr query_slp, BlastSeqSrc* bssp, SeqLocPtr subject_slp, - BlastScoringOptions* score_options, BlastScoreBlk* sbp, - Boolean is_gapped, SeqAlignPtr* head_seqalign); + SeqLocPtr query_slp, BlastSeqSrc* seq_src, + Boolean is_gapped, Boolean is_ooframe, SeqAlignPtr* head_seqalign); Boolean GapCollectDataForSeqalign(GapEditBlock* edit_block, GapEditScript* curr_in, Int4 numseg, |