diff options
Diffstat (limited to 'algo/blast/api/repeats_filter.c')
| -rw-r--r-- | algo/blast/api/repeats_filter.c | 10 |
1 files changed, 6 insertions, 4 deletions
diff --git a/algo/blast/api/repeats_filter.c b/algo/blast/api/repeats_filter.c index 7a7aa05c..61259273 100644 --- a/algo/blast/api/repeats_filter.c +++ b/algo/blast/api/repeats_filter.c @@ -1,5 +1,5 @@ #ifndef SKIP_DOXYGEN_PROCESSING -static char const rcsid[] = "$Id: repeats_filter.c,v 1.15 2006/05/24 21:17:50 camacho Exp $"; +static char const rcsid[] = "$Id: repeats_filter.c,v 1.18 2007/03/12 16:13:36 madden Exp $"; #endif /* SKIP_DOXYGEN_PROCESSING */ /* @@ -70,7 +70,7 @@ s_SetRepeatsSearchOptions(SBlastOptions* options) SBlastOptionsSetFilterString(options, REPEATS_SEARCH_FILTER_STRING))) return status; - options->lookup_options->lut_type = NA_LOOKUP_TABLE; + options->lookup_options->lut_type = eNaLookupTable; options->score_options->penalty = REPEATS_SEARCH_PENALTY; options->score_options->gap_open = REPEATS_SEARCH_GAP_OPEN; options->score_options->gap_extend = REPEATS_SEARCH_GAP_EXTEND; @@ -227,8 +227,10 @@ Blast_FindRepeatFilterSeqLoc(SeqLoc* query_seqloc, s_SetRepeatsSearchOptions(options); - status = - Blast_RunSearch(query_seqloc, seq_src, NULL, options, NULL, + status = + Blast_RunSearch(query_seqloc, (Blast_PsiCheckpointLoc *) NULL, + seq_src, (SeqLoc*) NULL, options, + (BlastTabularFormatData*) NULL, &results, &filter_loc, sum_returns); /* The ReadDBFILE structure will not be destroyed here, because the |