diff options
Diffstat (limited to 'api/asn2ffp.h')
| -rw-r--r-- | api/asn2ffp.h | 328 |
1 files changed, 2 insertions, 326 deletions
diff --git a/api/asn2ffp.h b/api/asn2ffp.h index a50083f4..2dcbcacb 100644 --- a/api/asn2ffp.h +++ b/api/asn2ffp.h @@ -29,7 +29,7 @@ * * Version Creation Date: 7/15/95 * -* $Revision: 6.34 $ +* $Revision: 6.37 $ * * File Description: * @@ -42,330 +42,6 @@ * ========================================================================== */ -/************************************* -* - * $Log: asn2ffp.h,v $ - * Revision 6.34 2006/07/13 17:06:38 bollin - * use Uint4 instead of Uint2 for itemID values - * removed unused variables - * resolved compiler warnings - * - * Revision 6.33 2003/07/22 16:18:27 kans - * added ZFIN as legal db_xref - * - * Revision 6.32 2003/06/10 18:44:10 kans - * added GeneDB to list of legal db_xrefs - * - * Revision 6.31 2003/05/29 20:25:19 kans - * added Interpro to list of legal dbxrefs - * - * Revision 6.30 2002/11/30 20:18:27 kans - * added GOA to list of legal db_xrefs - * - * Revision 6.29 2002/11/27 22:25:17 kans - * added AceView/WormGenes, NextDB, and WorfDB to legal db_xrefs - * - * Revision 6.28 2002/07/12 17:34:35 kans - * WormBase is now legal dbxref for all records, not just RefSeq - * - * Revision 6.27 2002/06/21 15:31:11 kans - * added GABI db_xref - * - * Revision 6.26 2002/06/18 20:59:59 kans - * added ISFinder as legal db_xref with hotlink - * - * Revision 6.25 2002/05/06 22:15:12 kans - * added IFO and JCM db_xrefs - * - * Revision 6.24 2002/02/20 21:59:33 tatiana - * DBNUM increased for IMGT/LIGM - * - * Revision 6.23 2001/11/29 18:29:38 kans - * added FANTOM_DB to list of legal db_xrefs, incremented DBNUM - * - * Revision 6.22 2001/10/15 17:08:44 kans - * updated legal db_xref list to collaboration + RefSeq - * - * Revision 6.21 2001/10/15 13:57:22 kans - * added BDGP_INS and SoyBase as legal db_xrefs - * - * Revision 6.20 2001/09/06 18:55:52 tatiana - * *** empty log message *** - * - * Revision 6.19 2001/03/17 00:51:14 tatiana - * GeneID added to dbxref array, DBNUM increased - * - * Revision 6.18 2001/01/26 19:26:37 kans - * added niaEST, increased DBNUM - * - * Revision 6.17 2001/01/18 23:57:02 kans - * add GO (gene ontology) to list of legal dbxrefs - * - * Revision 6.16 2000/12/05 01:21:23 tatiana - * DBNUM increased for COG - * - * Revision 6.15 2000/10/16 19:10:18 kans - * added UniSTS and InterimID to legal dbxrefs - * - * Revision 6.14 2000/08/28 22:17:19 kans - * added CDD to list of legal dbxrefs - * - * Revision 6.13 2000/07/14 20:24:27 kans - * added RGD as dbxref with web link - * - * Revision 6.12 2000/02/15 22:53:58 kans - * added dbSNP and RATMAP as legal dbxrefs, put /organelle under ajp->forgrel control - * - * Revision 6.11 1999/04/02 20:35:51 kans - * added prototype for GR_PrintPubs - * - * Revision 6.10 1999/03/22 23:19:19 tatiana - * PrintImpFeatEx() added - * - * Revision 6.9 1998/10/19 15:57:04 tatiana - * DBNUM increased for UniGene tag - * - * Revision 6.8 1998/08/19 18:40:03 tatiana - * DBNUM increased to add RiceGenes dbrag - * - * Revision 6.7 1998/05/18 14:41:19 tatiana - * DBNUM increased to add GI to dbtag array - * - * Revision 6.6 1998/04/15 20:50:38 tatiana - * bugs fixing - * - * Revision 6.5 1998/04/15 18:44:45 tatiana - * dbtag array moved from asn2ff3.c - * - * Revision 6.4 1997/12/15 15:45:59 tatiana - * features processing has been changed - * - * Revision 6.3 1997/12/02 16:44:17 tatiana - * missing semicolon in SortOrganizeFeat - * - * Revision 6.1 1997/09/16 15:41:01 kans - * added AddSiteNoteQual (TT) - * - * Revision 5.7 1997/06/19 18:37:24 vakatov - * [WIN32,MSVC++] Adopted for the "NCBIOBJ.LIB" DLL'ization - * - * Revision 5.6 1996/11/20 15:26:58 tatiana - * prototype for GetDefinitionLine - * - * Revision 5.5 1996/07/30 16:31:44 tatiana - * add Boolean arg in CheckNAFeat() - * - * Revision 5.4 1996/07/24 12:40:24 tatiana - * GetCdregionGeneXrefInfo changed number of arguments - * - * Revision 5.3 1996/07/12 16:48:49 tatiana - * *** empty log message *** - * - * Revision 5.2 1996/06/11 15:25:32 tatiana - * add PrintNID PROTO - * - * Revision 5.1 1996/06/06 14:50:31 tatiana - * *** empty log message *** - * - * Revision 4.10 1996/05/16 20:59:07 tatiana - * GetCdregionGeneXrefInfo changed to Boolean - * - * Revision 4.9 1996/04/29 18:54:51 tatiana - * *** empty log message *** - * - * Revision 4.9 1996/04/29 18:54:51 tatiana - * *** empty log message *** - * - * Revision 4.7 1996/04/09 14:05:06 tatiana - * *** empty log message *** - * - * Revision 4.6 1996/02/21 20:12:17 tatiana - * *** empty log message *** - * - * Revision 4.5 1996/02/15 17:20:23 tatiana - * GatherItemWithLock added - * - * Revision 4.4 1995/12/20 22:45:30 tatiana - * new function added - * - * Revision 4.1 1995/08/22 15:39:26 tatiana - * GetVersion name changed to GetBiotableVersion - * - * Revision 1.43 1995/07/17 19:33:20 kans - * parameters combined into Asn2ffJobPtr structure - * -* -**************************************/ - -/***************************************************************************** -* -* Header file for asn2gb files. -* -****************************************************************************/ - -/************************************* -* -* $Log: asn2ffp.h,v $ -* Revision 6.34 2006/07/13 17:06:38 bollin -* use Uint4 instead of Uint2 for itemID values -* removed unused variables -* resolved compiler warnings -* -* Revision 6.33 2003/07/22 16:18:27 kans -* added ZFIN as legal db_xref -* -* Revision 6.32 2003/06/10 18:44:10 kans -* added GeneDB to list of legal db_xrefs -* -* Revision 6.31 2003/05/29 20:25:19 kans -* added Interpro to list of legal dbxrefs -* -* Revision 6.30 2002/11/30 20:18:27 kans -* added GOA to list of legal db_xrefs -* -* Revision 6.29 2002/11/27 22:25:17 kans -* added AceView/WormGenes, NextDB, and WorfDB to legal db_xrefs -* -* Revision 6.28 2002/07/12 17:34:35 kans -* WormBase is now legal dbxref for all records, not just RefSeq -* -* Revision 6.27 2002/06/21 15:31:11 kans -* added GABI db_xref -* -* Revision 6.26 2002/06/18 20:59:59 kans -* added ISFinder as legal db_xref with hotlink -* -* Revision 6.25 2002/05/06 22:15:12 kans -* added IFO and JCM db_xrefs -* -* Revision 6.24 2002/02/20 21:59:33 tatiana -* DBNUM increased for IMGT/LIGM -* -* Revision 6.23 2001/11/29 18:29:38 kans -* added FANTOM_DB to list of legal db_xrefs, incremented DBNUM -* -* Revision 6.22 2001/10/15 17:08:44 kans -* updated legal db_xref list to collaboration + RefSeq -* -* Revision 6.21 2001/10/15 13:57:22 kans -* added BDGP_INS and SoyBase as legal db_xrefs -* -* Revision 6.20 2001/09/06 18:55:52 tatiana -* *** empty log message *** -* -* Revision 6.19 2001/03/17 00:51:14 tatiana -* GeneID added to dbxref array, DBNUM increased -* -* Revision 6.18 2001/01/26 19:26:37 kans -* added niaEST, increased DBNUM -* -* Revision 6.17 2001/01/18 23:57:02 kans -* add GO (gene ontology) to list of legal dbxrefs -* -* Revision 6.16 2000/12/05 01:21:23 tatiana -* DBNUM increased for COG -* -* Revision 6.15 2000/10/16 19:10:18 kans -* added UniSTS and InterimID to legal dbxrefs -* -* Revision 6.14 2000/08/28 22:17:19 kans -* added CDD to list of legal dbxrefs -* -* Revision 6.13 2000/07/14 20:24:27 kans -* added RGD as dbxref with web link -* -* Revision 6.12 2000/02/15 22:53:58 kans -* added dbSNP and RATMAP as legal dbxrefs, put /organelle under ajp->forgrel control -* -* Revision 6.11 1999/04/02 20:35:51 kans -* added prototype for GR_PrintPubs -* -* Revision 6.10 1999/03/22 23:19:19 tatiana -* PrintImpFeatEx() added -* -* Revision 6.9 1998/10/19 15:57:04 tatiana -* DBNUM increased for UniGene tag -* -* Revision 6.8 1998/08/19 18:40:03 tatiana -* DBNUM increased to add RiceGenes dbrag -* -* Revision 6.7 1998/05/18 14:41:19 tatiana -* DBNUM increased to add GI to dbtag array -* -* Revision 6.6 1998/04/15 20:50:38 tatiana -* bugs fixing -* -* Revision 6.5 1998/04/15 18:44:45 tatiana -* dbtag array moved from asn2ff3.c -* -* Revision 6.4 1997/12/15 15:45:59 tatiana -* features processing has been changed -* -* Revision 6.3 1997/12/02 16:44:17 tatiana -* missing semicolon in SortOrganizeFeat -* -* Revision 6.1 1997/09/16 15:41:01 kans -* added AddSiteNoteQual (TT) -* -* Revision 5.7 1997/06/19 18:37:24 vakatov -* [WIN32,MSVC++] Adopted for the "NCBIOBJ.LIB" DLL'ization -* -* Revision 5.6 1996/11/20 15:26:58 tatiana -* prototype for GetDefinitionLine -* - * Revision 5.5 1996/07/30 16:31:44 tatiana - * add Boolean arg in CheckNAFeat() - * - * Revision 5.4 1996/07/24 12:40:24 tatiana - * GetCdregionGeneXrefInfo changed number of arguments - * - * Revision 5.3 1996/07/12 16:48:49 tatiana - * *** empty log message *** - * - * Revision 5.2 1996/06/11 15:25:32 tatiana - * add PrintNID PROTO - * - * Revision 5.1 1996/06/06 14:50:31 tatiana - * *** empty log message *** - * - * Revision 4.10 1996/05/16 20:59:07 tatiana - * GetCdregionGeneXrefInfo changed to Boolean - * - * Revision 4.9 1996/04/29 18:54:51 tatiana - * *** empty log message *** - * - * Revision 4.9 1996/04/29 18:54:51 tatiana - * *** empty log message *** - * - * Revision 4.7 1996/04/09 14:05:06 tatiana - * *** empty log message *** - * - * Revision 4.6 1996/02/21 20:12:17 tatiana - * *** empty log message *** - * - * Revision 4.5 1996/02/15 17:20:23 tatiana - * GatherItemWithLock added - * - * Revision 4.4 1995/12/20 22:45:30 tatiana - * new function added - * - * Revision 4.1 1995/08/22 15:39:26 tatiana - * GetVersion name changed to GetBiotableVersion - * - * Revision 1.43 1995/07/17 19:33:20 kans - * parameters combined into Asn2ffJobPtr structure - * - * Revision 1.41 1995/06/19 21:40:02 kans - * Tatiana's first major reorganization, moving printing, adding HTML - * - * Revision 1.40 1995/05/22 16:14:20 tatiana - * add ASN2FF_SHOW_ALL_PUBS to asn2ff_flags - * - * Revision 1.39 1995/05/15 21:46:05 ostell - * added Log line - * -* -**************************************/ #ifndef _ASN2FFP_ #define _ASN2FFP_ @@ -440,7 +116,7 @@ NLM_EXTERN CharPtr FlatJournal PROTO ((Asn2ffJobPtr ajp, GBEntryPtr gbp, ValNode NLM_EXTERN ValNodePtr GetKeywordLine PROTO((Asn2ffJobPtr ajp, GBEntryPtr gbp)); NLM_EXTERN void PrintSourceFeat PROTO ((Asn2ffJobPtr ajp, GBEntryPtr gbp)); NLM_EXTERN Int2 PrintImpFeat PROTO ((Asn2ffJobPtr ajp, BioseqPtr bsp, SeqFeatPtr sfp)); -NLM_EXTERN Int2 PrintImpFeatEx PROTO ((Asn2ffJobPtr ajp, BioseqPtr bsp, SeqFeatPtr sfp, Int4 gi, Int2 entityID, Uint4 itemID)); +NLM_EXTERN Int2 PrintImpFeatEx PROTO ((Asn2ffJobPtr ajp, BioseqPtr bsp, SeqFeatPtr sfp, BIG_ID gi, Int2 entityID, Uint4 itemID)); NLM_EXTERN void PrintNAFeatAwp PROTO ((Asn2ffJobPtr ajp, GBEntryPtr gbp)); NLM_EXTERN void PrintNAFeatByNumber PROTO ((Asn2ffJobPtr ajp, GBEntryPtr gbp)); NLM_EXTERN void PrintAAFeatByNumber PROTO ((Asn2ffJobPtr ajp, GBEntryPtr gbp)); |