diff options
Diffstat (limited to 'api/seqmgr.h')
| -rw-r--r-- | api/seqmgr.h | 27 |
1 files changed, 23 insertions, 4 deletions
diff --git a/api/seqmgr.h b/api/seqmgr.h index 89ff1bbc..dd9ffeb7 100644 --- a/api/seqmgr.h +++ b/api/seqmgr.h @@ -29,7 +29,7 @@ * * Version Creation Date: 9/94 * -* $Revision: 6.60 $ +* $Revision: 6.62 $ * * File Description: Manager for Bioseqs and BioseqSets * @@ -40,6 +40,16 @@ * * * $Log: seqmgr.h,v $ +* Revision 6.62 2006/08/29 16:02:45 bollin +* fixed bug in reloading cached Bioseqs without user fetch procs in the +* ObjMgrData record. +* Added function for locking Bioseqs in an alignment that are cacheable +* +* Revision 6.61 2006/07/13 17:06:39 bollin +* use Uint4 instead of Uint2 for itemID values +* removed unused variables +* resolved compiler warnings +* * Revision 6.60 2006/04/13 20:02:15 kans * LookupFarSeqIDs takes inference parameter * @@ -679,7 +689,7 @@ NLM_EXTERN BioseqPtr LIBCALL BioseqFindCore PROTO((SeqIdPtr sip)); * itemtype is OBJ_BIOSEQ of course * *****************************************************************************/ -NLM_EXTERN Uint2 LIBCALL BioseqFindEntity PROTO((SeqIdPtr sip, Uint2Ptr itemIDptr)); +NLM_EXTERN Uint2 LIBCALL BioseqFindEntity PROTO((SeqIdPtr sip, Uint4Ptr itemIDptr)); /***************************************************************************** @@ -1084,8 +1094,8 @@ NLM_EXTERN void LIBCALL SeqMgrIndexAlignments (Uint2 entityID); * *****************************************************************************/ -NLM_EXTERN AnnotDescPtr LIBCALL SeqMgrFindAnnotDescByID (Uint2 entityID, Uint2 itemID); -NLM_EXTERN SeqAlignPtr LIBCALL SeqMgrFindSeqAlignByID PROTO((Uint2 entityID, Uint2 itemID)); +NLM_EXTERN AnnotDescPtr LIBCALL SeqMgrFindAnnotDescByID (Uint2 entityID, Uint4 itemID); +NLM_EXTERN SeqAlignPtr LIBCALL SeqMgrFindSeqAlignByID PROTO((Uint2 entityID, Uint4 itemID)); /***************************************************************************** * @@ -1107,6 +1117,15 @@ NLM_EXTERN ValNodePtr UnlockFarComponents (ValNodePtr bsplist); /***************************************************************************** * +* LockFarAlignmentBioseqs finds Bioseqs in an alignment that could be +* cached out and locks them. It returns a ValNode list of the Bioseqs +* that can be unlocked with UnlockFarComponents. +* +*****************************************************************************/ +NLM_EXTERN ValNodePtr LockFarAlignmentBioseqs (SeqAlignPtr salp); + +/***************************************************************************** +* * SeqMgrSetPreCache registers the GiToSeqID precache function * LookupFarSeqIDs calls any registered function to preload the cache * |