diff options
Diffstat (limited to 'api/sequtil.h')
| -rw-r--r-- | api/sequtil.h | 25 |
1 files changed, 21 insertions, 4 deletions
diff --git a/api/sequtil.h b/api/sequtil.h index 470c7b23..5d0f0b8f 100644 --- a/api/sequtil.h +++ b/api/sequtil.h @@ -29,13 +29,19 @@ * * Version Creation Date: 4/1/91 * -* $Revision: 6.52 $ +* $Revision: 6.54 $ * * File Description: Sequence Utilities for objseq and objsset * * Modifications: * -------------------------------------------------------------------------- * $Log: sequtil.h,v $ +* Revision 6.54 2008/02/12 16:30:29 kans +* added ACCN_REFSEQ_ARTIFICIAL_ASSEMBLY for NS_ +* +* Revision 6.53 2008/01/25 22:31:48 kans +* added ACCN_XXXX_TSA and ACCN_XXXX_TSA_PROT, EZ as NCBI TSA accession +* * Revision 6.52 2007/03/13 18:03:45 kans * added FreeSeqLocSetComponents to free sequence records referenced in a chain of SeqLocs * @@ -1218,6 +1224,15 @@ NLM_EXTERN Boolean LIBCALL NAccnIsDDBJ (CharPtr s); #define ACCN_DDBJ_GSS 61 +#define ACCN_NCBI_TSA 62 +#define ACCN_NCBI_TSA_PROT 63 +#define ACCN_EMBL_TSA 64 +#define ACCN_EMBL_TSA_PROT 65 +#define ACCN_DDBJ_TSA 66 +#define ACCN_DDBJ_TSA_PROT 67 + +#define ACCN_REFSEQ_ARTIFICIAL_ASSEMBLY 68 + /* Some accessions prefix can be either protein or nucleotide such as NCBI PATENT I, AR .. or segmented set Bioseqs 'AH' @@ -1247,18 +1262,20 @@ NLM_EXTERN Boolean LIBCALL NAccnIsDDBJ (CharPtr s); Define to detect Genbank's accessions: Genbank-subsumed GSDB accession numbers are defined to be Genbank's as well as GSDB DIRSUB records. */ -#define ACCN_IS_GENBANK(c) ((((c)&65535) == ACCN_NCBI_GSDB) || (((c)&65535)==ACCN_GSDB_DIRSUB) || (((c)&65535) == ACCN_NCBI_EST) || (((c)&65535) == ACCN_NCBI_DIRSUB) || (((c)&65535) == ACCN_NCBI_GENOME) || (((c)&65535) == ACCN_NCBI_PATENT) || (((c)&65535) == ACCN_NCBI_HTGS) || (((c)&65535) == ACCN_NCBI_GSS) || (((c)&65535) == ACCN_NCBI_STS) || (((c)&65535) == ACCN_NCBI_BACKBONE) || (((c)&65535) == ACCN_NCBI_SEGSET) || (((c)&65535) == ACCN_NCBI_WGS) || (((c)&65535) == ACCN_NCBI_OTHER) || (((c)&65535) == ACCN_NCBI_PROT) || (((c)&65535) == ACCN_NCBI_cDNA) || (((c)&65535) == ACCN_EMBL_GB) || (((c)&65535) == ACCN_EMBL_GB_DDBJ || (((c)&65535) == ACCN_GB_DDBJ)) ) +#define ACCN_IS_GENBANK(c) ((((c)&65535) == ACCN_NCBI_GSDB) || (((c)&65535)==ACCN_GSDB_DIRSUB) || (((c)&65535) == ACCN_NCBI_EST) || (((c)&65535) == ACCN_NCBI_DIRSUB) || (((c)&65535) == ACCN_NCBI_GENOME) || (((c)&65535) == ACCN_NCBI_PATENT) || (((c)&65535) == ACCN_NCBI_HTGS) || (((c)&65535) == ACCN_NCBI_GSS) || (((c)&65535) == ACCN_NCBI_STS) || (((c)&65535) == ACCN_NCBI_BACKBONE) || (((c)&65535) == ACCN_NCBI_SEGSET) || (((c)&65535) == ACCN_NCBI_WGS) || (((c)&65535) == ACCN_NCBI_OTHER) || (((c)&65535) == ACCN_NCBI_PROT) || (((c)&65535) == ACCN_NCBI_cDNA) || (((c)&65535) == ACCN_NCBI_TSA) || (((c)&65535) == ACCN_NCBI_TSA_PROT) || (((c)&65535) == ACCN_EMBL_GB) || (((c)&65535) == ACCN_EMBL_GB_DDBJ || (((c)&65535) == ACCN_GB_DDBJ)) ) /* XM_,NP_,NM_,NT_,NC_ reference sequence records created and curated by NCBI REFSEQ project */ -#define ACCN_IS_REFSEQ(c) (((c)== ACCN_REFSEQ_PROT) || ((c)== ACCN_REFSEQ_mRNA) || ((c)== ACCN_REFSEQ_CONTIG) || ((c)== ACCN_REFSEQ_CHROMOSOME) || ((c)== ACCN_REFSEQ_mRNA_PREDICTED) || ((c)== ACCN_REFSEQ_PROT_PREDICTED) || ((c)== ACCN_REFSEQ_GENOMIC) || (((c)&65535)== ACCN_REFSEQ) ) +#define ACCN_IS_REFSEQ(c) (((c)== ACCN_REFSEQ_PROT) || ((c)== ACCN_REFSEQ_mRNA) || ((c)== ACCN_REFSEQ_CONTIG) || ((c)== ACCN_REFSEQ_CHROMOSOME) || ((c)== ACCN_REFSEQ_mRNA_PREDICTED) || ((c)== ACCN_REFSEQ_PROT_PREDICTED) || ((c)== ACCN_REFSEQ_GENOMIC) || ((c)== ACCN_REFSEQ_ARTIFICIAL_ASSEMBLY) || (((c)&65535)== ACCN_REFSEQ) ) #define ACCN_IS_TPA(c) (((c)== ACCN_NCBI_TPA) || ((c)== ACCN_NCBI_TPA_PROT) || ((c)== ACCN_EMBL_TPA) || ((c)== ACCN_EMBL_TPA_PROT) || ((c)== ACCN_DDBJ_TPA) || ((c)== ACCN_DDBJ_TPA_PROT)) #define ACCN_IS_WGS(c) (((c)== ACCN_NCBI_WGS) || ((c)== ACCN_NCBI_WGS_PROT) || ((c)== ACCN_EMBL_WGS) || ((c)== ACCN_EMBL_WGS_PROT) || ((c)== ACCN_DDBJ_WGS) || ((c)== ACCN_DDBJ_WGS_PROT)) -#define ACCN_IS_NCBI(c) (ACCN_IS_REFSEQ((c)) || ACCN_IS_GENBANK((c)) || ((c)== ACCN_NCBI_TPA) || ((c)== ACCN_NCBI_TPA_PROT) || ((c)== ACCN_NCBI_WGS) || ((c)== ACCN_NCBI_WGS_PROT)) +#define ACCN_IS_TSA(c) (((c)== ACCN_NCBI_TSA) || ((c)== ACCN_NCBI_TSA_PROT) || ((c)== ACCN_EMBL_TSA) || ((c)== ACCN_EMBL_TSA_PROT) || ((c)== ACCN_DDBJ_TSA) || ((c)== ACCN_DDBJ_TSA_PROT)) + +#define ACCN_IS_NCBI(c) (ACCN_IS_REFSEQ((c)) || ACCN_IS_GENBANK((c)) || ((c)== ACCN_NCBI_TPA) || ((c)== ACCN_NCBI_TPA_PROT) || ((c)== ACCN_NCBI_WGS) || ((c)== ACCN_NCBI_WGS_PROT) || ((c)== ACCN_NCBI_TSA)) /* Macro to detect EMBL accession numbers (can also belong to another DB) |