diff options
Diffstat (limited to 'biostruc/cdd/cdd.h')
| -rw-r--r-- | biostruc/cdd/cdd.h | 705 |
1 files changed, 360 insertions, 345 deletions
diff --git a/biostruc/cdd/cdd.h b/biostruc/cdd/cdd.h index 0640300e..9e50ad64 100644 --- a/biostruc/cdd/cdd.h +++ b/biostruc/cdd/cdd.h @@ -10,7 +10,7 @@ #endif static char * asnfilename = "cdd.h24"; -static AsnValxNode avnx[87] = { +static AsnValxNode avnx[94] = { {20,"unassigned" ,0,0.0,&avnx[1] } , {20,"finished-ok" ,1,0.0,&avnx[2] } , {20,"pending-release" ,2,0.0,&avnx[3] } , @@ -79,27 +79,34 @@ static AsnValxNode avnx[87] = { {20,"pam70" ,5,0.0,&avnx[66] } , {20,"pam250" ,6,0.0,&avnx[67] } , {20,"other" ,255,0.0,NULL } , + {20,"allDescendants" ,0,0.0,&avnx[69] } , + {20,"immediateChildrenOnly" ,1,0.0,&avnx[70] } , + {20,"selfOnly" ,2,0.0,&avnx[71] } , + {20,"other" ,255,0.0,NULL } , + {20,"allDescendants" ,0,0.0,&avnx[73] } , + {20,"immediateChildrenOnly" ,1,0.0,&avnx[74] } , + {20,"other" ,255,0.0,NULL } , {2,NULL,0,0.0,NULL } , {2,NULL,0,0.0,NULL } , {2,NULL,1,0.0,NULL } , - {20,"unassigned" ,0,0.0,&avnx[72] } , - {20,"cd-info" ,1,0.0,&avnx[73] } , - {20,"align-annot" ,2,0.0,&avnx[74] } , - {20,"seq-list" ,3,0.0,&avnx[75] } , - {20,"seq-tree" ,4,0.0,&avnx[76] } , - {20,"merge-preview" ,5,0.0,&avnx[77] } , - {20,"cross-hits" ,6,0.0,&avnx[78] } , - {20,"notes" ,7,0.0,&avnx[79] } , - {20,"tax-tree" ,8,0.0,&avnx[80] } , - {20,"dart" ,9,0.0,&avnx[81] } , - {20,"dart-selected-rows" ,10,0.0,&avnx[82] } , + {20,"unassigned" ,0,0.0,&avnx[79] } , + {20,"cd-info" ,1,0.0,&avnx[80] } , + {20,"align-annot" ,2,0.0,&avnx[81] } , + {20,"seq-list" ,3,0.0,&avnx[82] } , + {20,"seq-tree" ,4,0.0,&avnx[83] } , + {20,"merge-preview" ,5,0.0,&avnx[84] } , + {20,"cross-hits" ,6,0.0,&avnx[85] } , + {20,"notes" ,7,0.0,&avnx[86] } , + {20,"tax-tree" ,8,0.0,&avnx[87] } , + {20,"dart" ,9,0.0,&avnx[88] } , + {20,"dart-selected-rows" ,10,0.0,&avnx[89] } , {20,"other" ,255,0.0,NULL } , - {20,"unassigned" ,0,0.0,&avnx[84] } , - {20,"user-recorded" ,1,0.0,&avnx[85] } , - {20,"server-generated" ,2,0.0,&avnx[86] } , + {20,"unassigned" ,0,0.0,&avnx[91] } , + {20,"user-recorded" ,1,0.0,&avnx[92] } , + {20,"server-generated" ,2,0.0,&avnx[93] } , {20,"other" ,255,0.0,NULL } }; -static AsnType atx[222] = { +static AsnType atx[226] = { {401, "Cdd-id" ,1,0,0,0,0,1,0,0,NULL,&atx[11],&atx[1],0,&atx[12]} , {0, "uid" ,128,0,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[3]} , {302, "INTEGER" ,0,2,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} , @@ -115,22 +122,22 @@ static AsnType atx[222] = { {402, "Cdd-id-set" ,1,0,0,0,0,1,0,0,NULL,&atx[14],&atx[13],0,&atx[15]} , {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[0],NULL,0,NULL} , {312, "SEQUENCE OF" ,0,16,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} , - {403, "Cdd" ,1,0,0,0,0,1,0,0,NULL,&atx[10],&atx[16],0,&atx[169]} , + {403, "Cdd" ,1,0,0,0,0,1,0,0,NULL,&atx[10],&atx[16],0,&atx[173]} , {0, "name" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[17]} , {0, "id" ,128,1,0,0,0,0,0,0,NULL,&atx[12],NULL,0,&atx[18]} , - {0, "description" ,128,2,0,1,0,0,0,0,NULL,&atx[19],NULL,0,&atx[56]} , - {432, "Cdd-descr-set" ,1,0,0,0,0,0,0,0,NULL,&atx[55],&atx[20],0,&atx[68]} , + {0, "description" ,128,2,0,1,0,0,0,0,NULL,&atx[19],NULL,0,&atx[57]} , + {432, "Cdd-descr-set" ,1,0,0,0,0,0,0,0,NULL,&atx[56],&atx[20],0,&atx[69]} , {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[21],NULL,0,NULL} , {431, "Cdd-descr" ,1,0,0,0,0,0,0,0,NULL,&atx[11],&atx[22],0,&atx[19]} , {0, "othername" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[23]} , {0, "category" ,128,1,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[24]} , {0, "comment" ,128,2,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[25]} , {0, "reference" ,128,3,0,0,0,0,0,0,NULL,&atx[26],NULL,0,&atx[27]} , - {410, "Pub" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[60]} , + {410, "Pub" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[61]} , {0, "create-date" ,128,4,0,0,0,0,0,0,NULL,&atx[28],NULL,0,&atx[29]} , {409, "Date" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[26]} , {0, "tax-source" ,128,5,0,0,0,0,0,0,NULL,&atx[30],NULL,0,&atx[31]} , - {415, "Org-ref" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[108]} , + {415, "Org-ref" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[109]} , {0, "source" ,128,6,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[32]} , {0, "status" ,128,7,0,0,0,0,0,0,NULL,&atx[2],&avnx[0],0,&atx[33]} , {0, "update-date" ,128,8,0,0,0,0,0,0,NULL,&atx[28],NULL,0,&atx[34]} , @@ -141,12 +148,12 @@ static AsnType atx[222] = { {429, "Cdd-repeat" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[39],0,&atx[47]} , {0, "count" ,128,0,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[40]} , {0, "location" ,128,1,0,1,0,0,0,0,NULL,&atx[41],NULL,0,&atx[42]} , - {418, "Seq-loc" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[124]} , + {418, "Seq-loc" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[125]} , {0, "avglen" ,128,2,0,1,0,0,0,0,NULL,&atx[2],NULL,0,NULL} , {0, "old-root" ,128,12,0,0,0,0,0,0,NULL,&atx[12],NULL,0,&atx[44]} , {0, "curation-status" ,128,13,0,0,0,0,0,0,NULL,&atx[2],&avnx[10],0,&atx[45]} , {0, "readonly-status" ,128,14,0,0,0,0,0,0,NULL,&atx[2],&avnx[20],0,&atx[46]} , - {0, "book-ref" ,128,15,0,0,0,0,0,0,NULL,&atx[47],NULL,0,NULL} , + {0, "book-ref" ,128,15,0,0,0,0,0,0,NULL,&atx[47],NULL,0,&atx[55]} , {430, "Cdd-book-ref" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[48],0,&atx[21]} , {0, "bookname" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[49]} , {0, "textelement" ,128,1,0,0,0,0,0,0,NULL,&atx[50],&avnx[24],0,&atx[51]} , @@ -155,172 +162,176 @@ static AsnType atx[222] = { {0, "subelementid" ,128,3,0,1,0,0,0,0,NULL,&atx[2],NULL,0,&atx[53]} , {0, "celementid" ,128,4,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[54]} , {0, "csubelementid" ,128,5,0,1,0,0,0,0,NULL,&atx[6],NULL,0,NULL} , + {0, "attribution" ,128,16,0,0,0,0,0,0,NULL,&atx[26],NULL,0,NULL} , {314, "SET OF" ,0,17,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} , - {0, "seqannot" ,128,3,0,1,0,0,0,0,NULL,&atx[14],&atx[57],0,&atx[59]} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[58],NULL,0,NULL} , - {413, "Seq-annot" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[62]} , - {0, "features" ,128,4,0,1,0,0,0,0,NULL,&atx[60],NULL,0,&atx[61]} , - {411, "Biostruc-annot-set" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[66]} , - {0, "sequences" ,128,5,0,1,0,0,0,0,NULL,&atx[62],NULL,0,&atx[63]} , + {0, "seqannot" ,128,3,0,1,0,0,0,0,NULL,&atx[14],&atx[58],0,&atx[60]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[59],NULL,0,NULL} , + {413, "Seq-annot" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[63]} , + {0, "features" ,128,4,0,1,0,0,0,0,NULL,&atx[61],NULL,0,&atx[62]} , + {411, "Biostruc-annot-set" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[67]} , + {0, "sequences" ,128,5,0,1,0,0,0,0,NULL,&atx[63],NULL,0,&atx[64]} , {414, "Seq-entry" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[30]} , - {0, "profile-range" ,128,6,0,1,0,0,0,0,NULL,&atx[64],NULL,0,&atx[65]} , + {0, "profile-range" ,128,6,0,1,0,0,0,0,NULL,&atx[65],NULL,0,&atx[66]} , {417, "Seq-interval" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[41]} , - {0, "trunc-master" ,128,7,0,1,0,0,0,0,NULL,&atx[66],NULL,0,&atx[67]} , - {412, "Bioseq" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[58]} , - {0, "posfreq" ,128,8,0,1,0,0,0,0,NULL,&atx[68],NULL,0,&atx[76]} , - {433, "Matrix" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[69],0,&atx[78]} , - {0, "ncolumns" ,128,0,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[70]} , - {0, "nrows" ,128,1,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[71]} , - {0, "row-labels" ,128,2,0,1,0,0,0,0,NULL,&atx[14],&atx[72],0,&atx[73]} , + {0, "trunc-master" ,128,7,0,1,0,0,0,0,NULL,&atx[67],NULL,0,&atx[68]} , + {412, "Bioseq" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[59]} , + {0, "posfreq" ,128,8,0,1,0,0,0,0,NULL,&atx[69],NULL,0,&atx[77]} , + {433, "Matrix" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[70],0,&atx[79]} , + {0, "ncolumns" ,128,0,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[71]} , + {0, "nrows" ,128,1,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[72]} , + {0, "row-labels" ,128,2,0,1,0,0,0,0,NULL,&atx[14],&atx[73],0,&atx[74]} , {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[6],NULL,0,NULL} , - {0, "scale-factor" ,128,3,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[74]} , - {0, "columns" ,128,4,0,0,0,0,0,0,NULL,&atx[14],&atx[75],0,NULL} , + {0, "scale-factor" ,128,3,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[75]} , + {0, "columns" ,128,4,0,0,0,0,0,0,NULL,&atx[14],&atx[76],0,NULL} , {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[2],NULL,0,NULL} , - {0, "scoremat" ,128,9,0,1,0,0,0,0,NULL,&atx[68],NULL,0,&atx[77]} , - {0, "distance" ,128,10,0,1,0,0,0,0,NULL,&atx[78],NULL,0,&atx[84]} , - {434, "Triangle" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[79],0,&atx[93]} , - {0, "nelements" ,128,0,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[80]} , - {0, "scores" ,128,1,0,1,0,0,0,0,NULL,&atx[81],NULL,0,&atx[82]} , - {420, "Score-set" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[127]} , - {0, "div-ranks" ,128,2,0,1,0,0,0,0,NULL,&atx[14],&atx[83],0,NULL} , + {0, "scoremat" ,128,9,0,1,0,0,0,0,NULL,&atx[69],NULL,0,&atx[78]} , + {0, "distance" ,128,10,0,1,0,0,0,0,NULL,&atx[79],NULL,0,&atx[85]} , + {434, "Triangle" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[80],0,&atx[94]} , + {0, "nelements" ,128,0,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[81]} , + {0, "scores" ,128,1,0,1,0,0,0,0,NULL,&atx[82],NULL,0,&atx[83]} , + {420, "Score-set" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[129]} , + {0, "div-ranks" ,128,2,0,1,0,0,0,0,NULL,&atx[14],&atx[84],0,NULL} , {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[2],NULL,0,NULL} , - {0, "parent" ,128,11,0,1,0,0,0,0,NULL,&atx[0],NULL,0,&atx[85]} , - {0, "children" ,128,12,0,1,0,0,0,0,NULL,&atx[12],NULL,0,&atx[86]} , - {0, "siblings" ,128,13,0,1,0,0,0,0,NULL,&atx[12],NULL,0,&atx[87]} , - {0, "neighbors" ,128,14,0,1,0,0,0,0,NULL,&atx[12],NULL,0,&atx[88]} , - {0, "pending" ,128,15,0,1,0,0,0,0,NULL,&atx[14],&atx[89],0,&atx[101]} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[90],NULL,0,NULL} , - {436, "Update-align" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[91],0,&atx[103]} , - {0, "description" ,128,0,0,1,0,0,0,0,NULL,&atx[14],&atx[92],0,&atx[99]} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[93],NULL,0,NULL} , - {435, "Update-comment" ,1,0,0,0,0,0,0,0,NULL,&atx[11],&atx[94],0,&atx[90]} , - {0, "comment" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[95]} , - {0, "addthis" ,128,1,0,0,0,0,0,0,NULL,&atx[41],NULL,0,&atx[96]} , - {0, "replaces" ,128,2,0,0,0,0,0,0,NULL,&atx[41],NULL,0,&atx[97]} , - {0, "reject-loc" ,128,3,0,0,0,0,0,0,NULL,&atx[41],NULL,0,&atx[98]} , + {0, "parent" ,128,11,0,1,0,0,0,0,NULL,&atx[0],NULL,0,&atx[86]} , + {0, "children" ,128,12,0,1,0,0,0,0,NULL,&atx[12],NULL,0,&atx[87]} , + {0, "siblings" ,128,13,0,1,0,0,0,0,NULL,&atx[12],NULL,0,&atx[88]} , + {0, "neighbors" ,128,14,0,1,0,0,0,0,NULL,&atx[12],NULL,0,&atx[89]} , + {0, "pending" ,128,15,0,1,0,0,0,0,NULL,&atx[14],&atx[90],0,&atx[102]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[91],NULL,0,NULL} , + {436, "Update-align" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[92],0,&atx[104]} , + {0, "description" ,128,0,0,1,0,0,0,0,NULL,&atx[14],&atx[93],0,&atx[100]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[94],NULL,0,NULL} , + {435, "Update-comment" ,1,0,0,0,0,0,0,0,NULL,&atx[11],&atx[95],0,&atx[91]} , + {0, "comment" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[96]} , + {0, "addthis" ,128,1,0,0,0,0,0,0,NULL,&atx[41],NULL,0,&atx[97]} , + {0, "replaces" ,128,2,0,0,0,0,0,0,NULL,&atx[41],NULL,0,&atx[98]} , + {0, "reject-loc" ,128,3,0,0,0,0,0,0,NULL,&atx[41],NULL,0,&atx[99]} , {0, "reference" ,128,4,0,0,0,0,0,0,NULL,&atx[26],NULL,0,NULL} , - {0, "seqannot" ,128,1,0,1,0,0,0,0,NULL,&atx[58],NULL,0,&atx[100]} , + {0, "seqannot" ,128,1,0,1,0,0,0,0,NULL,&atx[59],NULL,0,&atx[101]} , {0, "type" ,128,2,0,0,0,0,0,0,NULL,&atx[2],&avnx[34],0,NULL} , - {0, "rejects" ,128,16,0,1,0,0,0,0,NULL,&atx[14],&atx[102],0,&atx[109]} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[103],NULL,0,NULL} , - {437, "Reject-id" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[104],0,&atx[119]} , - {0, "description" ,128,0,0,1,0,0,0,0,NULL,&atx[14],&atx[105],0,&atx[106]} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[93],NULL,0,NULL} , - {0, "ids" ,128,1,0,0,0,0,0,0,NULL,&atx[55],&atx[107],0,NULL} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[108],NULL,0,NULL} , - {416, "Seq-id" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[64]} , - {0, "master3d" ,128,17,0,1,0,0,0,0,NULL,&atx[55],&atx[110],0,&atx[111]} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[108],NULL,0,NULL} , - {0, "alignannot" ,128,18,0,1,0,0,0,0,NULL,&atx[112],NULL,0,&atx[126]} , - {440, "Align-annot-set" ,1,0,0,0,0,0,0,0,NULL,&atx[14],&atx[113],0,&atx[132]} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[114],NULL,0,NULL} , - {439, "Align-annot" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[115],0,&atx[112]} , - {0, "location" ,128,0,0,0,0,0,0,0,NULL,&atx[41],NULL,0,&atx[116]} , - {0, "description" ,128,1,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[117]} , - {0, "evidence" ,128,2,0,1,0,0,0,0,NULL,&atx[14],&atx[118],0,NULL} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[119],NULL,0,NULL} , - {438, "Feature-evidence" ,1,0,0,0,0,0,0,0,NULL,&atx[11],&atx[120],0,&atx[114]} , - {0, "comment" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[121]} , - {0, "reference" ,128,1,0,0,0,0,0,0,NULL,&atx[26],NULL,0,&atx[122]} , - {0, "bsannot" ,128,2,0,0,0,0,0,0,NULL,&atx[60],NULL,0,&atx[123]} , - {0, "seqfeat" ,128,3,0,0,0,0,0,0,NULL,&atx[124],NULL,0,&atx[125]} , - {419, "Seq-feat" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[81]} , + {0, "rejects" ,128,16,0,1,0,0,0,0,NULL,&atx[14],&atx[103],0,&atx[110]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[104],NULL,0,NULL} , + {437, "Reject-id" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[105],0,&atx[120]} , + {0, "description" ,128,0,0,1,0,0,0,0,NULL,&atx[14],&atx[106],0,&atx[107]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[94],NULL,0,NULL} , + {0, "ids" ,128,1,0,0,0,0,0,0,NULL,&atx[56],&atx[108],0,NULL} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[109],NULL,0,NULL} , + {416, "Seq-id" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[65]} , + {0, "master3d" ,128,17,0,1,0,0,0,0,NULL,&atx[56],&atx[111],0,&atx[112]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[109],NULL,0,NULL} , + {0, "alignannot" ,128,18,0,1,0,0,0,0,NULL,&atx[113],NULL,0,&atx[128]} , + {440, "Align-annot-set" ,1,0,0,0,0,0,0,0,NULL,&atx[14],&atx[114],0,&atx[134]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[115],NULL,0,NULL} , + {439, "Align-annot" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[116],0,&atx[113]} , + {0, "location" ,128,0,0,0,0,0,0,0,NULL,&atx[41],NULL,0,&atx[117]} , + {0, "description" ,128,1,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[118]} , + {0, "evidence" ,128,2,0,1,0,0,0,0,NULL,&atx[14],&atx[119],0,&atx[127]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[120],NULL,0,NULL} , + {438, "Feature-evidence" ,1,0,0,0,0,0,0,0,NULL,&atx[11],&atx[121],0,&atx[115]} , + {0, "comment" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[122]} , + {0, "reference" ,128,1,0,0,0,0,0,0,NULL,&atx[26],NULL,0,&atx[123]} , + {0, "bsannot" ,128,2,0,0,0,0,0,0,NULL,&atx[61],NULL,0,&atx[124]} , + {0, "seqfeat" ,128,3,0,0,0,0,0,0,NULL,&atx[125],NULL,0,&atx[126]} , + {419, "Seq-feat" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[82]} , {0, "book-ref" ,128,4,0,0,0,0,0,0,NULL,&atx[47],NULL,0,NULL} , - 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{0, "cdAccession" ,128,0,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[141]} , - {0, "algorithm" ,128,1,0,0,0,0,0,0,NULL,&atx[142],NULL,0,&atx[151]} , - {443, "Algorithm-type" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[143],0,&atx[154]} , - {0, "scoring-Scheme" ,128,0,0,0,0,0,0,0,NULL,&atx[2],&avnx[45],0,&atx[144]} , - {0, "clustering-Method" ,128,1,0,0,0,0,0,0,NULL,&atx[2],&avnx[55],0,&atx[145]} , - {0, "score-Matrix" ,128,2,0,1,0,0,0,0,NULL,&atx[2],&avnx[60],0,&atx[146]} , - {0, "gapOpen" ,128,3,0,1,0,0,0,0,NULL,&atx[2],NULL,0,&atx[147]} , - {0, "gapExtend" ,128,4,0,1,0,0,0,0,NULL,&atx[2],NULL,0,&atx[148]} , - {0, "gapScaleFactor" ,128,5,0,1,0,0,0,0,NULL,&atx[2],NULL,0,&atx[149]} , - {0, "nTerminalExt" ,128,6,0,1,0,0,0,0,NULL,&atx[2],NULL,0,&atx[150]} , - {0, "cTerminalExt" ,128,7,0,1,0,0,0,0,NULL,&atx[2],NULL,0,NULL} , - {0, "isAnnotated" ,128,2,0,0,1,0,0,0,&avnx[68],&atx[152],NULL,0,&atx[153]} , + {0, "type" ,128,3,0,1,0,0,0,0,NULL,&atx[2],NULL,0,NULL} , + {0, "style-dictionary" ,128,19,0,1,0,0,0,0,NULL,&atx[129],NULL,0,&atx[130]} , + {421, "Cn3d-style-dictionary" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[131]} , + {0, "user-annotations" ,128,20,0,1,0,0,0,0,NULL,&atx[131],NULL,0,&atx[132]} , + {422, "Cn3d-user-annotations" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[139]} , + {0, "ancestors" ,128,21,0,1,0,0,0,0,NULL,&atx[14],&atx[133],0,&atx[138]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[134],NULL,0,NULL} , + {441, "Domain-parent" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[135],0,&atx[141]} , + {0, "parent-type" ,128,0,0,0,0,0,0,0,NULL,&atx[2],&avnx[40],0,&atx[136]} , + {0, "parentid" ,128,1,0,0,0,0,0,0,NULL,&atx[0],NULL,0,&atx[137]} , + {0, "seqannot" ,128,2,0,1,0,0,0,0,NULL,&atx[59],NULL,0,NULL} , + {0, "scoreparams" ,128,22,0,1,0,0,0,0,NULL,&atx[139],NULL,0,&atx[140]} , + {423, "PssmWithParameters" ,1,0,0,0,0,0,1,0,NULL,NULL,NULL,0,&atx[189]} , + {0, "seqtree" ,128,23,0,1,0,0,0,0,NULL,&atx[141],NULL,0,NULL} , + {442, "Sequence-tree" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[142],0,&atx[144]} , + {0, "cdAccession" ,128,0,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[143]} , + {0, "algorithm" ,128,1,0,0,0,0,0,0,NULL,&atx[144],NULL,0,&atx[155]} , + {443, "Algorithm-type" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[145],0,&atx[158]} , + {0, "scoring-Scheme" ,128,0,0,0,0,0,0,0,NULL,&atx[2],&avnx[45],0,&atx[146]} , + {0, "clustering-Method" ,128,1,0,0,0,0,0,0,NULL,&atx[2],&avnx[55],0,&atx[147]} , + {0, "score-Matrix" ,128,2,0,1,0,0,0,0,NULL,&atx[2],&avnx[60],0,&atx[148]} , + {0, "gapOpen" ,128,3,0,1,0,0,0,0,NULL,&atx[2],NULL,0,&atx[149]} , + {0, "gapExtend" ,128,4,0,1,0,0,0,0,NULL,&atx[2],NULL,0,&atx[150]} , + {0, "gapScaleFactor" ,128,5,0,1,0,0,0,0,NULL,&atx[2],NULL,0,&atx[151]} , + {0, "nTerminalExt" ,128,6,0,1,0,0,0,0,NULL,&atx[2],NULL,0,&atx[152]} , + {0, "cTerminalExt" ,128,7,0,1,0,0,0,0,NULL,&atx[2],NULL,0,&atx[153]} , + {0, "tree-scope" ,128,8,0,1,0,0,0,0,NULL,&atx[2],&avnx[68],0,&atx[154]} , + {0, "coloring-scope" ,128,9,0,1,0,0,0,0,NULL,&atx[2],&avnx[72],0,NULL} , + {0, "isAnnotated" ,128,2,0,0,1,0,0,0,&avnx[75],&atx[156],NULL,0,&atx[157]} , {301, "BOOLEAN" ,0,1,0,0,0,0,0,0,NULL,NULL,NULL,0,NULL} , - 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{0, "seqRange" ,128,0,0,0,0,0,0,0,NULL,&atx[64],NULL,0,&atx[164]} , + {0, "children" ,128,3,0,0,0,0,0,0,NULL,&atx[11],&atx[164],0,&atx[169]} , + {0, "children" ,128,0,0,0,0,0,0,0,NULL,&atx[14],&atx[165],0,&atx[166]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[158],NULL,0,NULL} , + {0, "footprint" ,128,1,0,0,0,0,0,0,NULL,&atx[10],&atx[167],0,NULL} , + {0, "seqRange" ,128,0,0,0,0,0,0,0,NULL,&atx[65],NULL,0,&atx[168]} , {0, "rowId" ,128,1,0,1,0,0,0,0,NULL,&atx[2],NULL,0,NULL} , - {0, "annotation" ,128,4,0,1,0,0,0,0,NULL,&atx[166],NULL,0,NULL} , - {445, "Node-annotation" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[167],0,&atx[208]} , - {0, "presentInChildCD" ,128,0,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[168]} , + {0, "annotation" ,128,4,0,1,0,0,0,0,NULL,&atx[170],NULL,0,NULL} , + {445, "Node-annotation" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[171],0,&atx[212]} , + {0, "presentInChildCD" ,128,0,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[172]} , {0, "note" ,128,1,0,1,0,0,0,0,NULL,&atx[6],NULL,0,NULL} , - {404, "Cdd-set" ,1,0,0,0,0,1,0,0,NULL,&atx[55],&atx[170],0,&atx[171]} , + {404, "Cdd-set" ,1,0,0,0,0,1,0,0,NULL,&atx[56],&atx[174],0,&atx[175]} , {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[15],NULL,0,NULL} , - {405, "Cdd-tree" ,1,0,0,0,0,1,0,0,NULL,&atx[10],&atx[172],0,&atx[179]} , - {0, "name" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[173]} , - {0, "id" ,128,1,0,0,0,0,0,0,NULL,&atx[12],NULL,0,&atx[174]} , - {0, "description" ,128,2,0,1,0,0,0,0,NULL,&atx[19],NULL,0,&atx[175]} , - {0, "parent" ,128,3,0,1,0,0,0,0,NULL,&atx[0],NULL,0,&atx[176]} , - {0, "children" ,128,4,0,1,0,0,0,0,NULL,&atx[12],NULL,0,&atx[177]} , - {0, "siblings" ,128,5,0,1,0,0,0,0,NULL,&atx[12],NULL,0,&atx[178]} , + {405, "Cdd-tree" ,1,0,0,0,0,1,0,0,NULL,&atx[10],&atx[176],0,&atx[183]} , + {0, "name" ,128,0,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[177]} , + {0, "id" ,128,1,0,0,0,0,0,0,NULL,&atx[12],NULL,0,&atx[178]} , + {0, "description" ,128,2,0,1,0,0,0,0,NULL,&atx[19],NULL,0,&atx[179]} , + {0, "parent" ,128,3,0,1,0,0,0,0,NULL,&atx[0],NULL,0,&atx[180]} , + {0, "children" ,128,4,0,1,0,0,0,0,NULL,&atx[12],NULL,0,&atx[181]} , + {0, "siblings" ,128,5,0,1,0,0,0,0,NULL,&atx[12],NULL,0,&atx[182]} , {0, "neighbors" ,128,6,0,1,0,0,0,0,NULL,&atx[12],NULL,0,NULL} , - {406, "Cdd-tree-set" ,1,0,0,0,0,1,0,0,NULL,&atx[14],&atx[180],0,&atx[181]} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[171],NULL,0,NULL} , - {407, "Cdd-pref-nodes" ,1,0,0,0,0,1,0,0,NULL,&atx[10],&atx[182],0,&atx[198]} , - {0, "preferred-nodes" ,128,0,0,0,0,0,0,0,NULL,&atx[183],NULL,0,&atx[190]} , - {425, "Cdd-org-ref-set" ,1,0,0,0,0,0,0,0,NULL,&atx[55],&atx[184],0,&atx[195]} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[185],NULL,0,NULL} , - {424, "Cdd-org-ref" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[186],0,&atx[183]} , - {0, "reference" ,128,0,0,0,0,0,0,0,NULL,&atx[30],NULL,0,&atx[187]} , - {0, "active" ,128,1,0,0,1,0,0,0,&avnx[70],&atx[152],NULL,0,&atx[188]} , - {0, "parent-tax-id" ,128,2,0,1,0,0,0,0,NULL,&atx[2],NULL,0,&atx[189]} , + {406, "Cdd-tree-set" ,1,0,0,0,0,1,0,0,NULL,&atx[14],&atx[184],0,&atx[185]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[175],NULL,0,NULL} , + {407, "Cdd-pref-nodes" ,1,0,0,0,0,1,0,0,NULL,&atx[10],&atx[186],0,&atx[202]} , + {0, "preferred-nodes" ,128,0,0,0,0,0,0,0,NULL,&atx[187],NULL,0,&atx[194]} , + {425, "Cdd-org-ref-set" ,1,0,0,0,0,0,0,0,NULL,&atx[56],&atx[188],0,&atx[199]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[189],NULL,0,NULL} , + {424, "Cdd-org-ref" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[190],0,&atx[187]} , + {0, "reference" ,128,0,0,0,0,0,0,0,NULL,&atx[30],NULL,0,&atx[191]} , + {0, "active" ,128,1,0,0,1,0,0,0,&avnx[77],&atx[156],NULL,0,&atx[192]} , + {0, "parent-tax-id" ,128,2,0,1,0,0,0,0,NULL,&atx[2],NULL,0,&atx[193]} , {0, "rank" ,128,3,0,1,0,0,0,0,NULL,&atx[6],NULL,0,NULL} , - {0, "model-organisms" ,128,1,0,1,0,0,0,0,NULL,&atx[183],NULL,0,&atx[191]} , - {0, "optional-nodes" ,128,2,0,1,0,0,0,0,NULL,&atx[183],NULL,0,&atx[192]} , - {0, "description" ,128,3,0,1,0,0,0,0,NULL,&atx[193],NULL,0,NULL} , - {427, "Cdd-pref-node-descr-set" ,1,0,0,0,0,0,0,0,NULL,&atx[55],&atx[194],0,&atx[4]} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[195],NULL,0,NULL} , - {426, "Cdd-pref-node-descr" ,1,0,0,0,0,0,0,0,NULL,&atx[11],&atx[196],0,&atx[193]} , - {0, "create-date" ,128,0,0,0,0,0,0,0,NULL,&atx[28],NULL,0,&atx[197]} , + {0, "model-organisms" ,128,1,0,1,0,0,0,0,NULL,&atx[187],NULL,0,&atx[195]} , + {0, "optional-nodes" ,128,2,0,1,0,0,0,0,NULL,&atx[187],NULL,0,&atx[196]} , + {0, "description" ,128,3,0,1,0,0,0,0,NULL,&atx[197],NULL,0,NULL} , + {427, "Cdd-pref-node-descr-set" ,1,0,0,0,0,0,0,0,NULL,&atx[56],&atx[198],0,&atx[4]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[199],NULL,0,NULL} , + {426, "Cdd-pref-node-descr" ,1,0,0,0,0,0,0,0,NULL,&atx[11],&atx[200],0,&atx[197]} , + {0, "create-date" ,128,0,0,0,0,0,0,0,NULL,&atx[28],NULL,0,&atx[201]} , {0, "description" ,128,1,0,0,0,0,0,0,NULL,&atx[6],NULL,0,NULL} , - {408, "Cdd-Project" ,1,0,0,0,0,1,0,0,NULL,&atx[10],&atx[199],0,&atx[28]} , - {0, "cds" ,128,0,0,0,0,0,0,0,NULL,&atx[14],&atx[200],0,&atx[201]} , + {408, "Cdd-Project" ,1,0,0,0,0,1,0,0,NULL,&atx[10],&atx[203],0,&atx[28]} , + {0, "cds" ,128,0,0,0,0,0,0,0,NULL,&atx[14],&atx[204],0,&atx[205]} , {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[15],NULL,0,NULL} , - {0, "cdcolor" ,128,1,0,0,0,0,0,0,NULL,&atx[14],&atx[202],0,&atx[203]} , + {0, "cdcolor" ,128,1,0,0,0,0,0,0,NULL,&atx[14],&atx[206],0,&atx[207]} , {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[2],NULL,0,NULL} , - {0, "viewers" ,128,2,0,0,0,0,0,0,NULL,&atx[14],&atx[204],0,&atx[215]} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[205],NULL,0,NULL} , - {447, "Cdd-Viewer" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[206],0,&atx[218]} , - {0, "ctrl" ,128,0,0,0,0,0,0,0,NULL,&atx[2],&avnx[71],0,&atx[207]} , - {0, "rect" ,128,1,0,1,0,0,0,0,NULL,&atx[208],NULL,0,&atx[213]} , - {446, "Cdd-Viewer-Rect" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[209],0,&atx[205]} , - {0, "top" ,128,0,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[210]} , - {0, "left" ,128,1,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[211]} , - {0, "width" ,128,2,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[212]} , + {0, "viewers" ,128,2,0,0,0,0,0,0,NULL,&atx[14],&atx[208],0,&atx[219]} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[209],NULL,0,NULL} , + {447, "Cdd-Viewer" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[210],0,&atx[222]} , + {0, "ctrl" ,128,0,0,0,0,0,0,0,NULL,&atx[2],&avnx[78],0,&atx[211]} , + {0, "rect" ,128,1,0,1,0,0,0,0,NULL,&atx[212],NULL,0,&atx[217]} , + {446, "Cdd-Viewer-Rect" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[213],0,&atx[209]} , + {0, "top" ,128,0,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[214]} , + {0, "left" ,128,1,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[215]} , + {0, "width" ,128,2,0,0,0,0,0,0,NULL,&atx[2],NULL,0,&atx[216]} , {0, "height" ,128,3,0,0,0,0,0,0,NULL,&atx[2],NULL,0,NULL} , - {0, "accessions" ,128,2,0,0,0,0,0,0,NULL,&atx[14],&atx[214],0,NULL} , + {0, "accessions" ,128,2,0,0,0,0,0,0,NULL,&atx[14],&atx[218],0,NULL} , {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[6],NULL,0,NULL} , - {0, "log" ,128,3,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[216]} , - {0, "scripts" ,128,4,0,1,0,0,0,0,NULL,&atx[14],&atx[217],0,NULL} , - {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[218],NULL,0,NULL} , - {448, "Cdd-Script" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[219],0,NULL} , - {0, "type" ,128,0,0,1,0,0,0,0,NULL,&atx[2],&avnx[83],0,&atx[220]} , - {0, "name" ,128,1,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[221]} , + {0, "log" ,128,3,0,0,0,0,0,0,NULL,&atx[6],NULL,0,&atx[220]} , + {0, "scripts" ,128,4,0,1,0,0,0,0,NULL,&atx[14],&atx[221],0,NULL} , + {0, NULL,1,-1,0,0,0,0,0,0,NULL,&atx[222],NULL,0,NULL} , + {448, "Cdd-Script" ,1,0,0,0,0,0,0,0,NULL,&atx[10],&atx[223],0,NULL} , + {0, "type" ,128,0,0,1,0,0,0,0,NULL,&atx[2],&avnx[90],0,&atx[224]} , + {0, "name" ,128,1,0,1,0,0,0,0,NULL,&atx[6],NULL,0,&atx[225]} , {0, "commands" ,128,2,0,0,0,0,0,0,NULL,&atx[6],NULL,0,NULL} }; static AsnModule ampx[1] = { @@ -349,80 +360,80 @@ static AsnModulePtr amp = ampx; #define CDD_name &at[16] #define CDD_id &at[17] #define CDD_description &at[18] -#define CDD_seqannot &at[56] -#define CDD_seqannot_E &at[57] -#define CDD_features &at[59] -#define CDD_sequences &at[61] -#define CDD_profile_range &at[63] -#define CDD_trunc_master &at[65] -#define CDD_posfreq &at[67] -#define CDD_scoremat &at[76] -#define CDD_distance &at[77] -#define CDD_parent &at[84] -#define CDD_children &at[85] -#define CDD_siblings &at[86] -#define CDD_neighbors &at[87] -#define CDD_pending &at[88] -#define CDD_pending_E &at[89] -#define CDD_rejects &at[101] -#define CDD_rejects_E &at[102] -#define CDD_master3d &at[109] -#define CDD_master3d_E &at[110] -#define CDD_alignannot &at[111] -#define CDD_style_dictionary &at[126] -#define CDD_user_annotations &at[128] -#define CDD_ancestors &at[130] -#define CDD_ancestors_E &at[131] -#define CDD_scoreparams &at[136] -#define CDD_seqtree &at[138] - -#define CDD_SET &at[169] -#define CDD_SET_E &at[170] - -#define CDD_TREE &at[171] -#define CDD_TREE_name &at[172] -#define CDD_TREE_id &at[173] -#define CDD_TREE_description &at[174] -#define CDD_TREE_parent &at[175] -#define CDD_TREE_children &at[176] -#define CDD_TREE_siblings &at[177] -#define CDD_TREE_neighbors &at[178] - -#define CDD_TREE_SET &at[179] -#define CDD_TREE_SET_E &at[180] - -#define CDD_PREF_NODES &at[181] -#define CDD_PREF_NODES_preferred_nodes &at[182] -#define CDD_PREF_NODES_model_organisms &at[190] -#define CDD_PREF_NODES_optional_nodes &at[191] -#define CDD_PREF_NODES_description &at[192] - -#define CDD_PROJECT &at[198] -#define CDD_PROJECT_cds &at[199] -#define CDD_PROJECT_cds_E &at[200] -#define CDD_PROJECT_cdcolor &at[201] -#define CDD_PROJECT_cdcolor_E &at[202] -#define CDD_PROJECT_viewers &at[203] -#define CDD_PROJECT_viewers_E &at[204] -#define CDD_PROJECT_log &at[215] -#define CDD_PROJECT_scripts &at[216] -#define CDD_PROJECT_scripts_E &at[217] - -#define CDD_ORG_REF &at[185] -#define CDD_ORG_REF_reference &at[186] -#define CDD_ORG_REF_active &at[187] -#define CDD_ORG_REF_parent_tax_id &at[188] -#define CDD_ORG_REF_rank &at[189] - -#define CDD_ORG_REF_SET &at[183] -#define CDD_ORG_REF_SET_E &at[184] - -#define CDD_PREF_NODE_DESCR &at[195] -#define CDD_PREF_NODE_DESCR_create_date &at[196] -#define CDD_PREF_NODE_DESCR_description &at[197] - -#define CDD_PREF_NODE_DESCR_SET &at[193] -#define CDD_PREF_NODE_DESCR_SET_E &at[194] +#define CDD_seqannot &at[57] +#define CDD_seqannot_E &at[58] +#define CDD_features &at[60] +#define CDD_sequences &at[62] +#define CDD_profile_range &at[64] +#define CDD_trunc_master &at[66] +#define CDD_posfreq &at[68] +#define CDD_scoremat &at[77] +#define CDD_distance &at[78] +#define CDD_parent &at[85] +#define CDD_children &at[86] +#define CDD_siblings &at[87] +#define CDD_neighbors &at[88] +#define CDD_pending &at[89] +#define CDD_pending_E &at[90] +#define CDD_rejects &at[102] +#define CDD_rejects_E &at[103] +#define CDD_master3d &at[110] +#define CDD_master3d_E &at[111] +#define CDD_alignannot &at[112] +#define CDD_style_dictionary &at[128] +#define CDD_user_annotations &at[130] +#define CDD_ancestors &at[132] +#define CDD_ancestors_E &at[133] +#define CDD_scoreparams &at[138] +#define CDD_seqtree &at[140] + +#define CDD_SET &at[173] +#define CDD_SET_E &at[174] + +#define CDD_TREE &at[175] +#define CDD_TREE_name &at[176] +#define CDD_TREE_id &at[177] +#define CDD_TREE_description &at[178] +#define CDD_TREE_parent &at[179] +#define CDD_TREE_children &at[180] +#define CDD_TREE_siblings &at[181] +#define CDD_TREE_neighbors &at[182] + +#define CDD_TREE_SET &at[183] +#define CDD_TREE_SET_E &at[184] + +#define CDD_PREF_NODES &at[185] +#define CDD_PREF_NODES_preferred_nodes &at[186] +#define CDD_PREF_NODES_model_organisms &at[194] +#define CDD_PREF_NODES_optional_nodes &at[195] +#define CDD_PREF_NODES_description &at[196] + +#define CDD_PROJECT &at[202] +#define CDD_PROJECT_cds &at[203] +#define CDD_PROJECT_cds_E &at[204] +#define CDD_PROJECT_cdcolor &at[205] +#define CDD_PROJECT_cdcolor_E &at[206] +#define CDD_PROJECT_viewers &at[207] +#define CDD_PROJECT_viewers_E &at[208] +#define CDD_PROJECT_log &at[219] +#define CDD_PROJECT_scripts &at[220] +#define CDD_PROJECT_scripts_E &at[221] + +#define CDD_ORG_REF &at[189] +#define CDD_ORG_REF_reference &at[190] +#define CDD_ORG_REF_active &at[191] +#define CDD_ORG_REF_parent_tax_id &at[192] +#define CDD_ORG_REF_rank &at[193] + +#define CDD_ORG_REF_SET &at[187] +#define CDD_ORG_REF_SET_E &at[188] + +#define CDD_PREF_NODE_DESCR &at[199] +#define CDD_PREF_NODE_DESCR_create_date &at[200] +#define CDD_PREF_NODE_DESCR_description &at[201] + +#define CDD_PREF_NODE_DESCR_SET &at[197] +#define CDD_PREF_NODE_DESCR_SET_E &at[198] #define GLOBAL_ID &at[4] #define GLOBAL_ID_accession &at[5] @@ -461,110 +472,114 @@ static AsnModulePtr amp = ampx; #define CDD_DESCR_curation_status &at[44] #define CDD_DESCR_readonly_status &at[45] #define CDD_DESCR_book_ref &at[46] +#define CDD_DESCR_attribution &at[55] #define CDD_DESCR_SET &at[19] #define CDD_DESCR_SET_E &at[20] -#define MATRIX &at[68] -#define MATRIX_ncolumns &at[69] -#define MATRIX_nrows &at[70] -#define MATRIX_row_labels &at[71] -#define MATRIX_row_labels_E &at[72] -#define MATRIX_scale_factor &at[73] -#define MATRIX_columns &at[74] -#define MATRIX_columns_E &at[75] - -#define TRIANGLE &at[78] -#define TRIANGLE_nelements &at[79] -#define TRIANGLE_scores &at[80] -#define TRIANGLE_div_ranks &at[82] -#define TRIANGLE_div_ranks_E &at[83] - -#define UPDATE_COMMENT &at[93] -#define UPDATE_COMMENT_comment &at[94] -#define UPDATE_COMMENT_addthis &at[95] -#define UPDATE_COMMENT_replaces &at[96] -#define UPDATE_COMMENT_reject_loc &at[97] -#define UPDATE_COMMENT_reference &at[98] - -#define UPDATE_ALIGN &at[90] -#define UPDATE_ALIGN_description &at[91] -#define UPDATE_ALIGN_description_E &at[92] -#define UPDATE_ALIGN_seqannot &at[99] -#define UPDATE_ALIGN_type &at[100] - -#define REJECT_ID &at[103] -#define REJECT_ID_description &at[104] -#define REJECT_ID_description_E &at[105] -#define REJECT_ID_ids &at[106] -#define REJECT_ID_ids_E &at[107] - -#define FEATURE_EVIDENCE &at[119] -#define FEATURE_EVIDENCE_comment &at[120] -#define FEATURE_EVIDENCE_reference &at[121] -#define FEATURE_EVIDENCE_bsannot &at[122] -#define FEATURE_EVIDENCE_seqfeat &at[123] -#define FEATURE_EVIDENCE_book_ref &at[125] - -#define ALIGN_ANNOT &at[114] -#define ALIGN_ANNOT_location &at[115] -#define ALIGN_ANNOT_description &at[116] -#define ALIGN_ANNOT_evidence &at[117] -#define ALIGN_ANNOT_evidence_E &at[118] - -#define ALIGN_ANNOT_SET &at[112] -#define ALIGN_ANNOT_SET_E &at[113] - -#define DOMAIN_PARENT &at[132] -#define DOMAIN_PARENT_parent_type &at[133] -#define DOMAIN_PARENT_parentid &at[134] -#define DOMAIN_PARENT_seqannot &at[135] - -#define SEQUENCE_TREE &at[139] -#define SEQUENCE_TREE_cdAccession &at[140] -#define SEQUENCE_TREE_algorithm &at[141] -#define SEQUENCE_TREE_isAnnotated &at[151] -#define SEQUENCE_TREE_root &at[153] - -#define ALGORITHM_TYPE &at[142] -#define ALGORITHM_TYPE_scoring_Scheme &at[143] -#define ALGORITHM_TYPE_clustering_Method &at[144] -#define ALGORITHM_TYPE_score_Matrix &at[145] -#define ALGORITHM_TYPE_gapOpen &at[146] -#define ALGORITHM_TYPE_gapExtend &at[147] -#define ALGORITHM_TYPE_gapScaleFactor &at[148] -#define ALGORITHM_TYPE_nTerminalExt &at[149] -#define ALGORITHM_TYPE_cTerminalExt &at[150] - -#define SEQTREE_NODE &at[154] -#define SEQTREE_NODE_isAnnotated &at[155] -#define SEQTREE_NODE_name &at[156] -#define SEQTREE_NODE_distance &at[157] -#define SEQTREE_NODE_children &at[159] -#define SEQTREE_NODE_children_children &at[160] -#define SEQTREE_NODE_children_children_E &at[161] -#define SEQTREE_NODE_children_footprint &at[162] -#define SEQTREE_NODE_children_footprint_seqRange &at[163] -#define SEQTREE_NODE_children_footprint_rowId &at[164] -#define SEQTREE_NODE_annotation &at[165] - -#define NODE_ANNOTATION &at[166] -#define NODE_ANNOTATION_presentInChildCD &at[167] -#define NODE_ANNOTATION_note &at[168] - -#define CDD_VIEWER_RECT &at[208] -#define CDD_VIEWER_RECT_top &at[209] -#define CDD_VIEWER_RECT_left &at[210] -#define CDD_VIEWER_RECT_width &at[211] -#define CDD_VIEWER_RECT_height &at[212] - -#define CDD_VIEWER &at[205] -#define CDD_VIEWER_ctrl &at[206] -#define CDD_VIEWER_rect &at[207] -#define CDD_VIEWER_accessions &at[213] -#define CDD_VIEWER_accessions_E &at[214] - -#define CDD_SCRIPT &at[218] -#define CDD_SCRIPT_type &at[219] -#define CDD_SCRIPT_name &at[220] -#define CDD_SCRIPT_commands &at[221] +#define MATRIX &at[69] +#define MATRIX_ncolumns &at[70] +#define MATRIX_nrows &at[71] +#define MATRIX_row_labels &at[72] +#define MATRIX_row_labels_E &at[73] +#define MATRIX_scale_factor &at[74] +#define MATRIX_columns &at[75] +#define MATRIX_columns_E &at[76] + +#define TRIANGLE &at[79] +#define TRIANGLE_nelements &at[80] +#define TRIANGLE_scores &at[81] +#define TRIANGLE_div_ranks &at[83] +#define TRIANGLE_div_ranks_E &at[84] + +#define UPDATE_COMMENT &at[94] +#define UPDATE_COMMENT_comment &at[95] +#define UPDATE_COMMENT_addthis &at[96] +#define UPDATE_COMMENT_replaces &at[97] +#define UPDATE_COMMENT_reject_loc &at[98] +#define UPDATE_COMMENT_reference &at[99] + +#define UPDATE_ALIGN &at[91] +#define UPDATE_ALIGN_description &at[92] +#define UPDATE_ALIGN_description_E &at[93] +#define UPDATE_ALIGN_seqannot &at[100] +#define UPDATE_ALIGN_type &at[101] + +#define REJECT_ID &at[104] +#define REJECT_ID_description &at[105] +#define REJECT_ID_description_E &at[106] +#define REJECT_ID_ids &at[107] +#define REJECT_ID_ids_E &at[108] + +#define FEATURE_EVIDENCE &at[120] +#define FEATURE_EVIDENCE_comment &at[121] +#define FEATURE_EVIDENCE_reference &at[122] +#define FEATURE_EVIDENCE_bsannot &at[123] +#define FEATURE_EVIDENCE_seqfeat &at[124] +#define FEATURE_EVIDENCE_book_ref &at[126] + +#define ALIGN_ANNOT &at[115] +#define ALIGN_ANNOT_location &at[116] +#define ALIGN_ANNOT_description &at[117] +#define ALIGN_ANNOT_evidence &at[118] +#define ALIGN_ANNOT_evidence_E &at[119] +#define ALIGN_ANNOT_type &at[127] + +#define ALIGN_ANNOT_SET &at[113] +#define ALIGN_ANNOT_SET_E &at[114] + +#define DOMAIN_PARENT &at[134] +#define DOMAIN_PARENT_parent_type &at[135] +#define DOMAIN_PARENT_parentid &at[136] +#define DOMAIN_PARENT_seqannot &at[137] + +#define SEQUENCE_TREE &at[141] +#define SEQUENCE_TREE_cdAccession &at[142] +#define SEQUENCE_TREE_algorithm &at[143] +#define SEQUENCE_TREE_isAnnotated &at[155] +#define SEQUENCE_TREE_root &at[157] + +#define ALGORITHM_TYPE &at[144] +#define ALGORITHM_TYPE_scoring_Scheme &at[145] +#define ALGORITHM_TYPE_clustering_Method &at[146] +#define ALGORITHM_TYPE_score_Matrix &at[147] +#define ALGORITHM_TYPE_gapOpen &at[148] +#define ALGORITHM_TYPE_gapExtend &at[149] +#define ALGORITHM_TYPE_gapScaleFactor &at[150] +#define ALGORITHM_TYPE_nTerminalExt &at[151] +#define ALGORITHM_TYPE_cTerminalExt &at[152] +#define ALGORITHM_TYPE_tree_scope &at[153] +#define ALGORITHM_TYPE_coloring_scope &at[154] + +#define SEQTREE_NODE &at[158] +#define SEQTREE_NODE_isAnnotated &at[159] +#define SEQTREE_NODE_name &at[160] +#define SEQTREE_NODE_distance &at[161] +#define SEQTREE_NODE_children &at[163] +#define SEQTREE_NODE_children_children &at[164] +#define SEQTREE_NODE_children_children_E &at[165] +#define SEQTREE_NODE_children_footprint &at[166] +#define SEQTREE_NODE_children_footprint_seqRange &at[167] +#define SEQTREE_NODE_children_footprint_rowId &at[168] +#define SEQTREE_NODE_annotation &at[169] + +#define NODE_ANNOTATION &at[170] +#define NODE_ANNOTATION_presentInChildCD &at[171] +#define NODE_ANNOTATION_note &at[172] + +#define CDD_VIEWER_RECT &at[212] +#define CDD_VIEWER_RECT_top &at[213] +#define CDD_VIEWER_RECT_left &at[214] +#define CDD_VIEWER_RECT_width &at[215] +#define CDD_VIEWER_RECT_height &at[216] + +#define CDD_VIEWER &at[209] +#define CDD_VIEWER_ctrl &at[210] +#define CDD_VIEWER_rect &at[211] +#define CDD_VIEWER_accessions &at[217] +#define CDD_VIEWER_accessions_E &at[218] + +#define CDD_SCRIPT &at[222] +#define CDD_SCRIPT_type &at[223] +#define CDD_SCRIPT_name &at[224] +#define CDD_SCRIPT_commands &at[225] |