diff options
Diffstat (limited to 'biostruc/cdd/objcdd.h')
| -rw-r--r-- | biostruc/cdd/objcdd.h | 129 |
1 files changed, 92 insertions, 37 deletions
diff --git a/biostruc/cdd/objcdd.h b/biostruc/cdd/objcdd.h index 57347fc0..5be0a2b9 100644 --- a/biostruc/cdd/objcdd.h +++ b/biostruc/cdd/objcdd.h @@ -20,7 +20,7 @@ extern "C" { /* } */ /************************************************** * * Generated objects for Module NCBI-Cdd -* Generated using ASNCODE Revision: 6.14 at Aug 14, 2003 10:05 AM +* Generated using ASNCODE Revision: 6.14 at Jan 15, 2004 1:40 PM * **************************************************/ @@ -86,7 +86,7 @@ typedef struct struct_Cdd { struct struct_Align_annot PNTR alignannot; struct struct_Cn3d_style_dictionary PNTR style_dictionary; struct struct_Cn3d_user_annotations PNTR user_annotations; - ValNodePtr ancestors; + struct struct_Domain_parent PNTR ancestors; struct struct_Score_matrix_parameters PNTR scoreparams; struct struct_Sequence_tree PNTR seqtree; } Cdd, PNTR CddPtr; @@ -165,6 +165,95 @@ NLM_EXTERN Boolean LIBCALL CddTreeSetAsnWrite PROTO (( CddTreeSetPtr , AsnIoPtr, /************************************************** * +* CddPrefNodes +* +**************************************************/ +typedef struct struct_Cdd_pref_nodes { + struct struct_Cdd_org_ref PNTR preferred_nodes; + struct struct_Cdd_org_ref PNTR model_organisms; + struct struct_Cdd_org_ref PNTR optional_nodes; + ValNodePtr description; +} CddPrefNodes, PNTR CddPrefNodesPtr; + + +NLM_EXTERN CddPrefNodesPtr LIBCALL CddPrefNodesFree PROTO ((CddPrefNodesPtr )); +NLM_EXTERN CddPrefNodesPtr LIBCALL CddPrefNodesNew PROTO (( void )); +NLM_EXTERN CddPrefNodesPtr LIBCALL CddPrefNodesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL CddPrefNodesAsnWrite PROTO (( CddPrefNodesPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* CddOrgRef +* +**************************************************/ +typedef struct struct_Cdd_org_ref { + struct struct_Cdd_org_ref PNTR next; + OrgRefPtr reference; + Uint1 active; +} CddOrgRef, PNTR CddOrgRefPtr; + + +NLM_EXTERN CddOrgRefPtr LIBCALL CddOrgRefFree PROTO ((CddOrgRefPtr )); +NLM_EXTERN CddOrgRefPtr LIBCALL CddOrgRefNew PROTO (( void )); +NLM_EXTERN CddOrgRefPtr LIBCALL CddOrgRefAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL CddOrgRefAsnWrite PROTO (( CddOrgRefPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* CddOrgRefSet +* +**************************************************/ +typedef struct struct_Cdd_org_ref CddOrgRefSet; +typedef struct struct_Cdd_org_ref PNTR CddOrgRefSetPtr; +#define CddOrgRefSetNew() Cdd_org_refNew() + +#ifdef NLM_GENERATED_CODE_PROTO + +NLM_EXTERN CddOrgRefSetPtr LIBCALL CddOrgRefSetFree PROTO ((CddOrgRefSetPtr )); +NLM_EXTERN CddOrgRefSetPtr LIBCALL CddOrgRefSetNew PROTO (( void )); +NLM_EXTERN CddOrgRefSetPtr LIBCALL CddOrgRefSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL CddOrgRefSetAsnWrite PROTO (( CddOrgRefSetPtr , AsnIoPtr, AsnTypePtr)); + +#endif /* NLM_GENERATED_CODE_PROTO */ + +typedef ValNodePtr CddPrefNodeDescrPtr; +typedef ValNode CddPrefNodeDescr; +#define CddPrefNodeDescr_create_date 1 +#define CddPrefNodeDescr_description 2 + + +NLM_EXTERN CddPrefNodeDescrPtr LIBCALL CddPrefNodeDescrFree PROTO ((CddPrefNodeDescrPtr )); +NLM_EXTERN CddPrefNodeDescrPtr LIBCALL CddPrefNodeDescrAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL CddPrefNodeDescrAsnWrite PROTO (( CddPrefNodeDescrPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* CddPrefNodeDescrSet +* +**************************************************/ +typedef ValNode CddPrefNodeDescrSet; +typedef ValNodePtr CddPrefNodeDescrSetPtr; +#define CddPrefNodeDescrSetNew() ValNodeNew(NULL) + +#ifdef NLM_GENERATED_CODE_PROTO + +NLM_EXTERN CddPrefNodeDescrSetPtr LIBCALL CddPrefNodeDescrSetFree PROTO ((CddPrefNodeDescrSetPtr )); +NLM_EXTERN CddPrefNodeDescrSetPtr LIBCALL CddPrefNodeDescrSetNew PROTO (( void )); +NLM_EXTERN CddPrefNodeDescrSetPtr LIBCALL CddPrefNodeDescrSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL CddPrefNodeDescrSetAsnWrite PROTO (( CddPrefNodeDescrSetPtr , AsnIoPtr, AsnTypePtr)); + +#endif /* NLM_GENERATED_CODE_PROTO */ + + + +/************************************************** +* * GlobalId * **************************************************/ @@ -430,6 +519,7 @@ NLM_EXTERN Boolean LIBCALL AlignAnnotSetAsnWrite PROTO (( AlignAnnotSetPtr , Asn **************************************************/ typedef struct struct_Domain_parent { struct struct_Domain_parent PNTR next; + Int4 parent_type; ValNodePtr parentid; struct seqannot PNTR seqannot; } DomainParent, PNTR DomainParentPtr; @@ -440,41 +530,6 @@ NLM_EXTERN DomainParentPtr LIBCALL DomainParentNew PROTO (( void )); NLM_EXTERN DomainParentPtr LIBCALL DomainParentAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL DomainParentAsnWrite PROTO (( DomainParentPtr , AsnIoPtr, AsnTypePtr)); -typedef ValNodePtr LineageInfoPtr; -typedef ValNode LineageInfo; -#define LineageInfo_simpleparent 1 -#define LineageInfo_LineageInfo_Complexparents 2 - - -NLM_EXTERN LineageInfoPtr LIBCALL LineageInfoFree PROTO ((LineageInfoPtr )); -NLM_EXTERN LineageInfoPtr LIBCALL LineageInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); -NLM_EXTERN Boolean LIBCALL LineageInfoAsnWrite PROTO (( LineageInfoPtr , AsnIoPtr, AsnTypePtr)); - - - -/************************************************** -* -* LineageInfo_complexparents -* -**************************************************/ - -#ifdef NLM_GENERATED_CODE_PROTO - -typedef struct struct_LineageInfo_Complexparents { - struct struct_Domain_parent PNTR fusionparents; - struct struct_Domain_parent PNTR deletionparent; -} LineageInfo_complexparents, PNTR LineageInfo_complexparentsPtr; -#endif /* NLM_GENERATED_CODE_PROTO */ - -#ifdef NLM_GENERATED_CODE_PROTO - -static LineageInfo_complexparentsPtr LIBCALL LineageInfo_complexparentsFree PROTO ((LineageInfo_complexparentsPtr )); -static LineageInfo_complexparentsPtr LIBCALL LineageInfo_complexparentsNew PROTO (( void )); -static LineageInfo_complexparentsPtr LIBCALL LineageInfo_complexparentsAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); -static Boolean LIBCALL LineageInfo_complexparentsAsnWrite PROTO (( LineageInfo_complexparentsPtr , AsnIoPtr, AsnTypePtr)); - -#endif /* NLM_GENERATED_CODE_PROTO */ - /************************************************** |