diff options
Diffstat (limited to 'object/objmacro.h')
| -rwxr-xr-x | object/objmacro.h | 1538 |
1 files changed, 1538 insertions, 0 deletions
diff --git a/object/objmacro.h b/object/objmacro.h new file mode 100755 index 00000000..647f34c7 --- /dev/null +++ b/object/objmacro.h @@ -0,0 +1,1538 @@ +#ifndef _objmacro_ +#define _objmacro_ + +#undef NLM_EXTERN +#ifdef NLM_IMPORT +#define NLM_EXTERN NLM_IMPORT +#else +#define NLM_EXTERN extern +#endif + + +#ifdef __cplusplus +extern "C" { /* } */ +#endif + + +/************************************************** +* +* Generated objects for Module NCBI-Macro +* Generated using ASNCODE Revision: 6.16 at Feb 22, 2008 12:57 PM +* +**************************************************/ + +NLM_EXTERN Boolean LIBCALL +objmacroAsnLoad PROTO((void)); + + +/************************************************** +* +* AECRAction +* +**************************************************/ +typedef struct struct_AECR_action { + ValNodePtr action; + ValNodePtr constraint; +} AECRAction, PNTR AECRActionPtr; + + +NLM_EXTERN AECRActionPtr LIBCALL AECRActionFree PROTO ((AECRActionPtr )); +NLM_EXTERN AECRActionPtr LIBCALL AECRActionNew PROTO (( void )); +NLM_EXTERN AECRActionPtr LIBCALL AECRActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL AECRActionAsnWrite PROTO (( AECRActionPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* ParseAction +* +**************************************************/ +typedef struct struct_Parse_action { + struct struct_Text_portion PNTR portion; + ValNodePtr src; + ValNodePtr dest; + Uint2 capitalization; + Uint1 remove_from_parsed; + Uint2 existing_text; +} ParseAction, PNTR ParseActionPtr; + + +NLM_EXTERN ParseActionPtr LIBCALL ParseActionFree PROTO ((ParseActionPtr )); +NLM_EXTERN ParseActionPtr LIBCALL ParseActionNew PROTO (( void )); +NLM_EXTERN ParseActionPtr LIBCALL ParseActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL ParseActionAsnWrite PROTO (( ParseActionPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* MacroActionList +* +**************************************************/ +typedef ValNode MacroActionList; +typedef ValNodePtr MacroActionListPtr; +#define MacroActionListNew() ValNodeNew(NULL) + +#ifdef NLM_GENERATED_CODE_PROTO + +NLM_EXTERN MacroActionListPtr LIBCALL MacroActionListFree PROTO ((MacroActionListPtr )); +NLM_EXTERN MacroActionListPtr LIBCALL MacroActionListNew PROTO (( void )); +NLM_EXTERN MacroActionListPtr LIBCALL MacroActionListAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL MacroActionListAsnWrite PROTO (( MacroActionListPtr , AsnIoPtr, AsnTypePtr)); + +#endif /* NLM_GENERATED_CODE_PROTO */ + +/* following #defines are for enumerated type, not used by object loaders */ +#define String_location_contains 1 +#define String_location_equals 2 +#define String_location_starts 3 +#define String_location_ends 4 +#define String_location_inlist 5 + + + +/************************************************** +* +* StringConstraint +* +**************************************************/ +typedef struct struct_String_constraint { + CharPtr match_text; + Uint2 match_location; + Uint1 case_sensitive; + Uint1 whole_word; + Uint1 not_present; +} StringConstraint, PNTR StringConstraintPtr; + + +NLM_EXTERN StringConstraintPtr LIBCALL StringConstraintFree PROTO ((StringConstraintPtr )); +NLM_EXTERN StringConstraintPtr LIBCALL StringConstraintNew PROTO (( void )); +NLM_EXTERN StringConstraintPtr LIBCALL StringConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL StringConstraintAsnWrite PROTO (( StringConstraintPtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define Strand_constraint_any 0 +#define Strand_constraint_plus 1 +#define Strand_constraint_minus 2 + +/* following #defines are for enumerated type, not used by object loaders */ +#define Seqtype_constraint_any 0 +#define Seqtype_constraint_nuc 1 +#define Seqtype_constraint_prot 2 + + + +/************************************************** +* +* LocationConstraint +* +**************************************************/ +typedef struct struct_Location_constraint { + Uint2 strand; + Uint2 seq_type; +} LocationConstraint, PNTR LocationConstraintPtr; + + +NLM_EXTERN LocationConstraintPtr LIBCALL LocationConstraintFree PROTO ((LocationConstraintPtr )); +NLM_EXTERN LocationConstraintPtr LIBCALL LocationConstraintNew PROTO (( void )); +NLM_EXTERN LocationConstraintPtr LIBCALL LocationConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL LocationConstraintAsnWrite PROTO (( LocationConstraintPtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define Object_type_constraint_any 0 +#define Object_type_constraint_feature 1 +#define Object_type_constraint_descriptor 2 + +/* following #defines are for enumerated type, not used by object loaders */ +#define Feature_type_any 0 +#define Feature_type_gene 1 +#define Feature_type_org 2 +#define Feature_type_cds 3 +#define Feature_type_prot 4 +#define Feature_type_preRNA 5 +#define Feature_type_mRNA 6 +#define Feature_type_tRNA 7 +#define Feature_type_rRNA 8 +#define Feature_type_snRNA 9 +#define Feature_type_scRNA 10 +#define Feature_type_otherRNA 11 +#define Feature_type_pub 12 +#define Feature_type_seq 13 +#define Feature_type_imp 14 +#define Feature_type_allele 15 +#define Feature_type_attenuator 16 +#define Feature_type_c_region 17 +#define Feature_type_caat_signal 18 +#define Feature_type_imp_CDS 19 +#define Feature_type_conflict 20 +#define Feature_type_d_loop 21 +#define Feature_type_d_segment 22 +#define Feature_type_enhancer 23 +#define Feature_type_exon 24 +#define Feature_type_gC_signal 25 +#define Feature_type_iDNA 26 +#define Feature_type_intron 27 +#define Feature_type_j_segment 28 +#define Feature_type_ltr 29 +#define Feature_type_mat_peptide 30 +#define Feature_type_misc_binding 31 +#define Feature_type_misc_difference 32 +#define Feature_type_misc_feature 33 +#define Feature_type_misc_recomb 34 +#define Feature_type_misc_RNA 35 +#define Feature_type_misc_signal 36 +#define Feature_type_misc_structure 37 +#define Feature_type_modified_base 38 +#define Feature_type_mutation 39 +#define Feature_type_n_region 40 +#define Feature_type_old_sequence 41 +#define Feature_type_polyA_signal 42 +#define Feature_type_polyA_site 43 +#define Feature_type_precursor_RNA 44 +#define Feature_type_prim_transcript 45 +#define Feature_type_primer_bind 46 +#define Feature_type_promoter 47 +#define Feature_type_protein_bind 48 +#define Feature_type_rbs 49 +#define Feature_type_repeat_region 50 +#define Feature_type_repeat_unit 51 +#define Feature_type_rep_origin 52 +#define Feature_type_s_region 53 +#define Feature_type_satellite 54 +#define Feature_type_sig_peptide 55 +#define Feature_type_source 56 +#define Feature_type_stem_loop 57 +#define Feature_type_sts 58 +#define Feature_type_tata_signal 59 +#define Feature_type_terminator 60 +#define Feature_type_transit_peptide 61 +#define Feature_type_unsure 62 +#define Feature_type_v_region 63 +#define Feature_type_v_segment 64 +#define Feature_type_variation 65 +#define Feature_type_virion 66 +#define Feature_type_n3clip 67 +#define Feature_type_n3UTR 68 +#define Feature_type_n5clip 69 +#define Feature_type_n5UTR 70 +#define Feature_type_n10_signal 71 +#define Feature_type_n35_signal 72 +#define Feature_type_site_ref 73 +#define Feature_type_region 74 +#define Feature_type_comment 75 +#define Feature_type_bond 76 +#define Feature_type_site 77 +#define Feature_type_rsite 78 +#define Feature_type_user 79 +#define Feature_type_txinit 80 +#define Feature_type_num 81 +#define Feature_type_psec_str 82 +#define Feature_type_non_std_residue 83 +#define Feature_type_het 84 +#define Feature_type_biosrc 85 +#define Feature_type_preprotein 86 +#define Feature_type_mat_peptide_aa 87 +#define Feature_type_sig_peptide_aa 88 +#define Feature_type_transit_peptide_aa 89 +#define Feature_type_snoRNA 90 +#define Feature_type_gap 91 +#define Feature_type_operon 92 +#define Feature_type_oriT 93 +#define Feature_type_ncRNA 94 +#define Feature_type_tmRNA 95 + +/* following #defines are for enumerated type, not used by object loaders */ +#define Feat_qual_legal_allele 1 +#define Feat_qual_legal_activity 2 +#define Feat_qual_legal_anticodon 3 +#define Feat_qual_legal_bound_moiety 4 +#define Feat_qual_legal_chromosome 5 +#define Feat_qual_legal_citation 6 +#define Feat_qual_legal_codon 7 +#define Feat_qual_legal_codon_start 8 +#define Feat_qual_legal_codons_recognized 9 +#define Feat_qual_legal_compare 10 +#define Feat_qual_legal_cons_splice 11 +#define Feat_qual_legal_db_xref 12 +#define Feat_qual_legal_description 13 +#define Feat_qual_legal_direction 14 +#define Feat_qual_legal_ec_number 15 +#define Feat_qual_legal_environmental_sample 16 +#define Feat_qual_legal_evidence 17 +#define Feat_qual_legal_exception 18 +#define Feat_qual_legal_experiment 19 +#define Feat_qual_legal_focus 20 +#define Feat_qual_legal_frequency 21 +#define Feat_qual_legal_function 22 +#define Feat_qual_legal_gene 23 +#define Feat_qual_legal_gene_description 24 +#define Feat_qual_legal_inference 25 +#define Feat_qual_legal_label 26 +#define Feat_qual_legal_locus_tag 27 +#define Feat_qual_legal_map 28 +#define Feat_qual_legal_mobile_element 29 +#define Feat_qual_legal_mod_base 30 +#define Feat_qual_legal_mol_type 31 +#define Feat_qual_legal_ncRNA_class 32 +#define Feat_qual_legal_note 33 +#define Feat_qual_legal_number 34 +#define Feat_qual_legal_old_locus_tag 35 +#define Feat_qual_legal_operon 36 +#define Feat_qual_legal_organism 37 +#define Feat_qual_legal_organelle 38 +#define Feat_qual_legal_partial 39 +#define Feat_qual_legal_phenotype 40 +#define Feat_qual_legal_plasmid 41 +#define Feat_qual_legal_product 42 +#define Feat_qual_legal_protein_id 43 +#define Feat_qual_legal_pseudo 44 +#define Feat_qual_legal_rearranged 45 +#define Feat_qual_legal_replace 46 +#define Feat_qual_legal_rpt_family 47 +#define Feat_qual_legal_rpt_type 48 +#define Feat_qual_legal_rpt_unit 49 +#define Feat_qual_legal_rpt_unit_seq 50 +#define Feat_qual_legal_rpt_unit_range 51 +#define Feat_qual_legal_segment 52 +#define Feat_qual_legal_sequenced_mol 53 +#define Feat_qual_legal_standard_name 54 +#define Feat_qual_legal_synonym 55 +#define Feat_qual_legal_transcript_id 56 +#define Feat_qual_legal_transgenic 57 +#define Feat_qual_legal_translation 58 +#define Feat_qual_legal_transl_except 59 +#define Feat_qual_legal_transl_table 60 +#define Feat_qual_legal_usedin 61 + + + +/************************************************** +* +* FeatQualLegalVal +* +**************************************************/ +typedef struct struct_Feat_qual_legal_val { + Uint2 qual; + CharPtr val; +} FeatQualLegalVal, PNTR FeatQualLegalValPtr; + + +NLM_EXTERN FeatQualLegalValPtr LIBCALL FeatQualLegalValFree PROTO ((FeatQualLegalValPtr )); +NLM_EXTERN FeatQualLegalValPtr LIBCALL FeatQualLegalValNew PROTO (( void )); +NLM_EXTERN FeatQualLegalValPtr LIBCALL FeatQualLegalValAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL FeatQualLegalValAsnWrite PROTO (( FeatQualLegalValPtr , AsnIoPtr, AsnTypePtr)); + +typedef ValNodePtr FeatQualLegalValChoicePtr; +typedef ValNode FeatQualLegalValChoice; +#define FeatQualLegalValChoice_qual 1 + + +NLM_EXTERN FeatQualLegalValChoicePtr LIBCALL FeatQualLegalValChoiceFree PROTO ((FeatQualLegalValChoicePtr )); +NLM_EXTERN FeatQualLegalValChoicePtr LIBCALL FeatQualLegalValChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL FeatQualLegalValChoiceAsnWrite PROTO (( FeatQualLegalValChoicePtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* FeatQualLegalSet +* +**************************************************/ +typedef ValNode FeatQualLegalSet; +typedef ValNodePtr FeatQualLegalSetPtr; +#define FeatQualLegalSetNew() ValNodeNew(NULL) + +#ifdef NLM_GENERATED_CODE_PROTO + +NLM_EXTERN FeatQualLegalSetPtr LIBCALL FeatQualLegalSetFree PROTO ((FeatQualLegalSetPtr )); +NLM_EXTERN FeatQualLegalSetPtr LIBCALL FeatQualLegalSetNew PROTO (( void )); +NLM_EXTERN FeatQualLegalSetPtr LIBCALL FeatQualLegalSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL FeatQualLegalSetAsnWrite PROTO (( FeatQualLegalSetPtr , AsnIoPtr, AsnTypePtr)); + +#endif /* NLM_GENERATED_CODE_PROTO */ + +typedef ValNodePtr FeatQualChoicePtr; +typedef ValNode FeatQualChoice; +#define FeatQualChoice_legal_qual 1 +#define FeatQualChoice_illegal_qual 2 + + +NLM_EXTERN FeatQualChoicePtr LIBCALL FeatQualChoiceFree PROTO ((FeatQualChoicePtr )); +NLM_EXTERN FeatQualChoicePtr LIBCALL FeatQualChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL FeatQualChoiceAsnWrite PROTO (( FeatQualChoicePtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* FeatureField +* +**************************************************/ +typedef struct struct_Feature_field { + Uint2 type; + ValNodePtr field; +} FeatureField, PNTR FeatureFieldPtr; + + +NLM_EXTERN FeatureFieldPtr LIBCALL FeatureFieldFree PROTO ((FeatureFieldPtr )); +NLM_EXTERN FeatureFieldPtr LIBCALL FeatureFieldNew PROTO (( void )); +NLM_EXTERN FeatureFieldPtr LIBCALL FeatureFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL FeatureFieldAsnWrite PROTO (( FeatureFieldPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* FeatureFieldLegal +* +**************************************************/ +typedef struct struct_Feature_field_legal { + Uint2 type; + Uint2 field; +} FeatureFieldLegal, PNTR FeatureFieldLegalPtr; + + +NLM_EXTERN FeatureFieldLegalPtr LIBCALL FeatureFieldLegalFree PROTO ((FeatureFieldLegalPtr )); +NLM_EXTERN FeatureFieldLegalPtr LIBCALL FeatureFieldLegalNew PROTO (( void )); +NLM_EXTERN FeatureFieldLegalPtr LIBCALL FeatureFieldLegalAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL FeatureFieldLegalAsnWrite PROTO (( FeatureFieldLegalPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* FeatureFieldPair +* +**************************************************/ +typedef struct struct_Feature_field_pair { + Uint2 type; + ValNodePtr field_from; + ValNodePtr field_to; +} FeatureFieldPair, PNTR FeatureFieldPairPtr; + + +NLM_EXTERN FeatureFieldPairPtr LIBCALL FeatureFieldPairFree PROTO ((FeatureFieldPairPtr )); +NLM_EXTERN FeatureFieldPairPtr LIBCALL FeatureFieldPairNew PROTO (( void )); +NLM_EXTERN FeatureFieldPairPtr LIBCALL FeatureFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL FeatureFieldPairAsnWrite PROTO (( FeatureFieldPairPtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define Source_qual_acronym 1 +#define Source_qual_anamorph 2 +#define Source_qual_authority 3 +#define Source_qual_bio_material 4 +#define Source_qual_biotype 5 +#define Source_qual_biovar 6 +#define Source_qual_breed 7 +#define Source_qual_cell_line 8 +#define Source_qual_cell_type 9 +#define Source_qual_chemovar 10 +#define Source_qual_chromosome 11 +#define Source_qual_clone 12 +#define Source_qual_clone_lib 13 +#define Source_qual_collected_by 14 +#define Source_qual_collection_date 15 +#define Source_qual_common 16 +#define Source_qual_common_name 17 +#define Source_qual_country 18 +#define Source_qual_cultivar 19 +#define Source_qual_culture_collection 20 +#define Source_qual_dev_stage 21 +#define Source_qual_division 22 +#define Source_qual_dosage 23 +#define Source_qual_ecotype 24 +#define Source_qual_endogenous_virus_name 25 +#define Source_qual_environmental_sample 26 +#define Source_qual_forma 27 +#define Source_qual_forma_specialis 28 +#define Source_qual_frequency 29 +#define Source_qual_fwd_primer_name 30 +#define Source_qual_fwd_primer_seq 31 +#define Source_qual_gb_acronym 32 +#define Source_qual_gb_anamorph 33 +#define Source_qual_gb_synonym 34 +#define Source_qual_genotype 35 +#define Source_qual_germline 36 +#define Source_qual_group 37 +#define Source_qual_haplotype 38 +#define Source_qual_identified_by 39 +#define Source_qual_insertion_seq_name 40 +#define Source_qual_isolate 41 +#define Source_qual_isolation_source 42 +#define Source_qual_lab_host 43 +#define Source_qual_lat_lon 44 +#define Source_qual_lineage 45 +#define Source_qual_map 46 +#define Source_qual_metagenome_source 47 +#define Source_qual_metagenomic 48 +#define Source_qual_old_lineage 49 +#define Source_qual_old_name 50 +#define Source_qual_orgmod_note 51 +#define Source_qual_nat_host 52 +#define Source_qual_pathovar 53 +#define Source_qual_plasmid_name 54 +#define Source_qual_plastid_name 55 +#define Source_qual_pop_variant 56 +#define Source_qual_rearranged 57 +#define Source_qual_rev_primer_name 58 +#define Source_qual_rev_primer_seq 59 +#define Source_qual_segment 60 +#define Source_qual_serogroup 61 +#define Source_qual_serotype 62 +#define Source_qual_serovar 63 +#define Source_qual_sex 64 +#define Source_qual_specimen_voucher 65 +#define Source_qual_strain 66 +#define Source_qual_subclone 67 +#define Source_qual_subgroup 68 +#define Source_qual_subsource_note 69 +#define Source_qual_sub_species 70 +#define Source_qual_substrain 71 +#define Source_qual_subtype 72 +#define Source_qual_synonym 73 +#define Source_qual_taxname 74 +#define Source_qual_teleomorph 75 +#define Source_qual_tissue_lib 76 +#define Source_qual_tissue_type 77 +#define Source_qual_transgenic 78 +#define Source_qual_transposon_name 79 +#define Source_qual_type 80 +#define Source_qual_variety 81 + + + +/************************************************** +* +* SourceQualPair +* +**************************************************/ +typedef struct struct_Source_qual_pair { + Uint2 field_from; + Uint2 field_to; +} SourceQualPair, PNTR SourceQualPairPtr; + + +NLM_EXTERN SourceQualPairPtr LIBCALL SourceQualPairFree PROTO ((SourceQualPairPtr )); +NLM_EXTERN SourceQualPairPtr LIBCALL SourceQualPairNew PROTO (( void )); +NLM_EXTERN SourceQualPairPtr LIBCALL SourceQualPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL SourceQualPairAsnWrite PROTO (( SourceQualPairPtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define Source_location_unknown 0 +#define Source_location_genomic 1 +#define Source_location_chloroplast 2 +#define Source_location_chromoplast 3 +#define Source_location_kinetoplast 4 +#define Source_location_mitochondrion 5 +#define Source_location_plastid 6 +#define Source_location_macronuclear 7 +#define Source_location_extrachrom 8 +#define Source_location_plasmid 9 +#define Source_location_transposon 10 +#define Source_location_insertion_seq 11 +#define Source_location_cyanelle 12 +#define Source_location_proviral 13 +#define Source_location_virion 14 +#define Source_location_nucleomorph 15 +#define Source_location_apicoplast 16 +#define Source_location_leucoplast 17 +#define Source_location_proplastid 18 +#define Source_location_endogenous_virus 19 +#define Source_location_hydrogenosome 20 +#define Source_location_chromosome 21 +#define Source_location_chromatophore 22 + +/* following #defines are for enumerated type, not used by object loaders */ +#define Source_origin_unknown 0 +#define Source_origin_natural 1 +#define Source_origin_natmut 2 +#define Source_origin_mut 3 +#define Source_origin_artificial 4 +#define Source_origin_synthetic 5 +#define Source_origin_other 255 + +typedef ValNodePtr SourceQualChoicePtr; +typedef ValNode SourceQualChoice; +#define SourceQualChoice_textqual 1 +#define SourceQualChoice_location 2 +#define SourceQualChoice_origin 3 + + +NLM_EXTERN SourceQualChoicePtr LIBCALL SourceQualChoiceFree PROTO ((SourceQualChoicePtr )); +NLM_EXTERN SourceQualChoicePtr LIBCALL SourceQualChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL SourceQualChoiceAsnWrite PROTO (( SourceQualChoicePtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define CDSGeneProt_field_cds_comment 1 +#define CDSGeneProt_field_gene_locus 2 +#define CDSGeneProt_field_gene_description 3 +#define CDSGeneProt_field_gene_comment 4 +#define CDSGeneProt_field_gene_allele 5 +#define CDSGeneProt_field_gene_maploc 6 +#define CDSGeneProt_field_gene_locus_tag 7 +#define CDSGeneProt_field_gene_synonym 8 +#define CDSGeneProt_field_gene_old_locus_tag 9 +#define CDSGeneProt_field_mrna_product 10 +#define CDSGeneProt_field_mrna_comment 11 +#define CDSGeneProt_field_prot_name 12 +#define CDSGeneProt_field_prot_description 13 +#define CDSGeneProt_field_prot_ec_number 14 +#define CDSGeneProt_field_prot_activity 15 +#define CDSGeneProt_field_prot_comment 16 +#define CDSGeneProt_field_mat_peptide_name 17 +#define CDSGeneProt_field_mat_peptide_description 18 +#define CDSGeneProt_field_mat_peptide_ec_number 19 +#define CDSGeneProt_field_mat_peptide_activity 20 +#define CDSGeneProt_field_mat_peptide_comment 21 + + + +/************************************************** +* +* CDSGeneProtFieldPair +* +**************************************************/ +typedef struct struct_CDSGeneProt_field_pair { + Uint2 field_from; + Uint2 field_to; +} CDSGeneProtFieldPair, PNTR CDSGeneProtFieldPairPtr; + + +NLM_EXTERN CDSGeneProtFieldPairPtr LIBCALL CDSGeneProtFieldPairFree PROTO ((CDSGeneProtFieldPairPtr )); +NLM_EXTERN CDSGeneProtFieldPairPtr LIBCALL CDSGeneProtFieldPairNew PROTO (( void )); +NLM_EXTERN CDSGeneProtFieldPairPtr LIBCALL CDSGeneProtFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL CDSGeneProtFieldPairAsnWrite PROTO (( CDSGeneProtFieldPairPtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define Molecule_type_unknown 0 +#define Molecule_type_genomic 1 +#define Molecule_type_precursor_RNA 2 +#define Molecule_type_mRNA 3 +#define Molecule_type_rRNA 4 +#define Molecule_type_tRNA 5 +#define Molecule_type_snRNA 6 +#define Molecule_type_scRNA 7 +#define Molecule_type_genomic_mRNA 8 +#define Molecule_type_cRNA 9 +#define Molecule_type_snoRNA 10 +#define Molecule_type_transcribed_RNA 11 +#define Molecule_type_ncRNA 12 +#define Molecule_type_transfer_messenger_RNA 13 +#define Molecule_type_other 14 + +/* following #defines are for enumerated type, not used by object loaders */ +#define Technique_type_unknown 0 +#define Technique_type_standard 1 +#define Technique_type_est 2 +#define Technique_type_sts 3 +#define Technique_type_survey 4 +#define Technique_type_genetic_map 5 +#define Technique_type_physical_map 6 +#define Technique_type_derived 7 +#define Technique_type_concept_trans 8 +#define Technique_type_seq_pept 9 +#define Technique_type_both 10 +#define Technique_type_seq_pept_overlap 11 +#define Technique_type_seq_pept_homol 12 +#define Technique_type_concept_trans_a 13 +#define Technique_type_htgs_1 14 +#define Technique_type_htgs_2 15 +#define Technique_type_htgs_3 16 +#define Technique_type_fli_cDNA 17 +#define Technique_type_htgs_0 18 +#define Technique_type_htc 19 +#define Technique_type_wgs 20 +#define Technique_type_barcode 21 +#define Technique_type_composite_wgs_htgs 22 +#define Technique_type_tsa 23 +#define Technique_type_other 24 + +/* following #defines are for enumerated type, not used by object loaders */ +#define Completedness_type_unknown 0 +#define Completedness_type_complete 1 +#define Completedness_type_partial 2 +#define Completedness_type_no_left 3 +#define Completedness_type_no_right 4 +#define Completedness_type_no_ends 5 +#define Completedness_type_has_left 6 +#define Completedness_type_has_right 7 +#define Completedness_type_other 6 + +/* following #defines are for enumerated type, not used by object loaders */ +#define Molecule_class_type_unknown 0 +#define Molecule_class_type_dna 1 +#define Molecule_class_type_rna 2 +#define Molecule_class_type_protein 3 +#define Molecule_class_type_nucleotide 4 +#define Molecule_class_type_other 5 + +/* following #defines are for enumerated type, not used by object loaders */ +#define Topology_type_unknown 0 +#define Topology_type_linear 1 +#define Topology_type_circular 2 +#define Topology_type_tandem 3 +#define Topology_type_other 4 + +/* following #defines are for enumerated type, not used by object loaders */ +#define Strand_type_unknown 0 +#define Strand_type_single 1 +#define Strand_type_double__ 2 +#define Strand_type_mixed 3 +#define Strand_type_mixed_rev 4 +#define Strand_type_other 5 + +typedef ValNodePtr MolinfoFieldPtr; +typedef ValNode MolinfoField; +#define MolinfoField_molecule 1 +#define MolinfoField_technique 2 +#define MolinfoField_completedness 3 +#define MolinfoField_mol_class 4 +#define MolinfoField_topology 5 +#define MolinfoField_strand 6 + + +NLM_EXTERN MolinfoFieldPtr LIBCALL MolinfoFieldFree PROTO ((MolinfoFieldPtr )); +NLM_EXTERN MolinfoFieldPtr LIBCALL MolinfoFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL MolinfoFieldAsnWrite PROTO (( MolinfoFieldPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* MolinfoMoleculePair +* +**************************************************/ +typedef struct struct_Molinfo_molecule_pair { + Uint2 from; + Uint2 to; +} MolinfoMoleculePair, PNTR MolinfoMoleculePairPtr; + + +NLM_EXTERN MolinfoMoleculePairPtr LIBCALL MolinfoMoleculePairFree PROTO ((MolinfoMoleculePairPtr )); +NLM_EXTERN MolinfoMoleculePairPtr LIBCALL MolinfoMoleculePairNew PROTO (( void )); +NLM_EXTERN MolinfoMoleculePairPtr LIBCALL MolinfoMoleculePairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL MolinfoMoleculePairAsnWrite PROTO (( MolinfoMoleculePairPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* MolinfoTechniquePair +* +**************************************************/ +typedef struct struct_Molinfo_technique_pair { + Uint2 from; + Uint2 to; +} MolinfoTechniquePair, PNTR MolinfoTechniquePairPtr; + + +NLM_EXTERN MolinfoTechniquePairPtr LIBCALL MolinfoTechniquePairFree PROTO ((MolinfoTechniquePairPtr )); +NLM_EXTERN MolinfoTechniquePairPtr LIBCALL MolinfoTechniquePairNew PROTO (( void )); +NLM_EXTERN MolinfoTechniquePairPtr LIBCALL MolinfoTechniquePairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL MolinfoTechniquePairAsnWrite PROTO (( MolinfoTechniquePairPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* MolinfoCompletednessPair +* +**************************************************/ +typedef struct struct_Molinfo_completedness_pair { + Uint2 from; + Uint2 to; +} MolinfoCompletednessPair, PNTR MolinfoCompletednessPairPtr; + + +NLM_EXTERN MolinfoCompletednessPairPtr LIBCALL MolinfoCompletednessPairFree PROTO ((MolinfoCompletednessPairPtr )); +NLM_EXTERN MolinfoCompletednessPairPtr LIBCALL MolinfoCompletednessPairNew PROTO (( void )); +NLM_EXTERN MolinfoCompletednessPairPtr LIBCALL MolinfoCompletednessPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL MolinfoCompletednessPairAsnWrite PROTO (( MolinfoCompletednessPairPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* MolinfoMolClassPair +* +**************************************************/ +typedef struct struct_Molinfo_mol_class_pair { + Uint2 from; + Uint2 to; +} MolinfoMolClassPair, PNTR MolinfoMolClassPairPtr; + + +NLM_EXTERN MolinfoMolClassPairPtr LIBCALL MolinfoMolClassPairFree PROTO ((MolinfoMolClassPairPtr )); +NLM_EXTERN MolinfoMolClassPairPtr LIBCALL MolinfoMolClassPairNew PROTO (( void )); +NLM_EXTERN MolinfoMolClassPairPtr LIBCALL MolinfoMolClassPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL MolinfoMolClassPairAsnWrite PROTO (( MolinfoMolClassPairPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* MolinfoTopologyPair +* +**************************************************/ +typedef struct struct_Molinfo_topology_pair { + Uint2 from; + Uint2 to; +} MolinfoTopologyPair, PNTR MolinfoTopologyPairPtr; + + +NLM_EXTERN MolinfoTopologyPairPtr LIBCALL MolinfoTopologyPairFree PROTO ((MolinfoTopologyPairPtr )); +NLM_EXTERN MolinfoTopologyPairPtr LIBCALL MolinfoTopologyPairNew PROTO (( void )); +NLM_EXTERN MolinfoTopologyPairPtr LIBCALL MolinfoTopologyPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL MolinfoTopologyPairAsnWrite PROTO (( MolinfoTopologyPairPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* MolinfoStrandPair +* +**************************************************/ +typedef struct struct_Molinfo_strand_pair { + Uint2 from; + Uint2 to; +} MolinfoStrandPair, PNTR MolinfoStrandPairPtr; + + +NLM_EXTERN MolinfoStrandPairPtr LIBCALL MolinfoStrandPairFree PROTO ((MolinfoStrandPairPtr )); +NLM_EXTERN MolinfoStrandPairPtr LIBCALL MolinfoStrandPairNew PROTO (( void )); +NLM_EXTERN MolinfoStrandPairPtr LIBCALL MolinfoStrandPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL MolinfoStrandPairAsnWrite PROTO (( MolinfoStrandPairPtr , AsnIoPtr, AsnTypePtr)); + +typedef ValNodePtr MolinfoFieldPairPtr; +typedef ValNode MolinfoFieldPair; +#define MolinfoFieldPair_molecule 1 +#define MolinfoFieldPair_technique 2 +#define MolinfoFieldPair_completedness 3 +#define MolinfoFieldPair_mol_class 4 +#define MolinfoFieldPair_topology 5 +#define MolinfoFieldPair_strand 6 + + +NLM_EXTERN MolinfoFieldPairPtr LIBCALL MolinfoFieldPairFree PROTO ((MolinfoFieldPairPtr )); +NLM_EXTERN MolinfoFieldPairPtr LIBCALL MolinfoFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL MolinfoFieldPairAsnWrite PROTO (( MolinfoFieldPairPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* SourceConstraint +* +**************************************************/ +typedef struct struct_Source_constraint { + ValNodePtr field1; + ValNodePtr field2; + struct struct_String_constraint PNTR constraint; + Uint2 type_constraint; +} SourceConstraint, PNTR SourceConstraintPtr; + + +NLM_EXTERN SourceConstraintPtr LIBCALL SourceConstraintFree PROTO ((SourceConstraintPtr )); +NLM_EXTERN SourceConstraintPtr LIBCALL SourceConstraintNew PROTO (( void )); +NLM_EXTERN SourceConstraintPtr LIBCALL SourceConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL SourceConstraintAsnWrite PROTO (( SourceConstraintPtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define CDSGeneProt_feature_type_constraint_gene 1 +#define CDSGeneProt_feature_type_constraint_mRNA 2 +#define CDSGeneProt_feature_type_constraint_cds 3 +#define CDSGeneProt_feature_type_constraint_prot 4 +#define CDSGeneProt_feature_type_constraint_exon 5 +#define CDSGeneProt_feature_type_constraint_mat_peptide 6 + + + +/************************************************** +* +* CDSGeneProtPseudoConstraint +* +**************************************************/ +typedef struct struct_CDSGeneProt_pseudo_constraint { + Uint2 feature; + Uint1 is_pseudo; +} CDSGeneProtPseudoConstraint, PNTR CDSGeneProtPseudoConstraintPtr; + + +NLM_EXTERN CDSGeneProtPseudoConstraintPtr LIBCALL CDSGeneProtPseudoConstraintFree PROTO ((CDSGeneProtPseudoConstraintPtr )); +NLM_EXTERN CDSGeneProtPseudoConstraintPtr LIBCALL CDSGeneProtPseudoConstraintNew PROTO (( void )); +NLM_EXTERN CDSGeneProtPseudoConstraintPtr LIBCALL CDSGeneProtPseudoConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL CDSGeneProtPseudoConstraintAsnWrite PROTO (( CDSGeneProtPseudoConstraintPtr , AsnIoPtr, AsnTypePtr)); + +typedef ValNodePtr CDSGeneProtConstraintFieldPtr; +typedef ValNode CDSGeneProtConstraintField; +#define CDSGeneProtConstraintField_field 1 + + +NLM_EXTERN CDSGeneProtConstraintFieldPtr LIBCALL CDSGeneProtConstraintFieldFree PROTO ((CDSGeneProtConstraintFieldPtr )); +NLM_EXTERN CDSGeneProtConstraintFieldPtr LIBCALL CDSGeneProtConstraintFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL CDSGeneProtConstraintFieldAsnWrite PROTO (( CDSGeneProtConstraintFieldPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* CDSGeneProtQualConstraint +* +**************************************************/ +typedef struct struct_CDSGeneProt_qual_constraint { + ValNodePtr field1; + ValNodePtr field2; + struct struct_String_constraint PNTR constraint; +} CDSGeneProtQualConstraint, PNTR CDSGeneProtQualConstraintPtr; + + +NLM_EXTERN CDSGeneProtQualConstraintPtr LIBCALL CDSGeneProtQualConstraintFree PROTO ((CDSGeneProtQualConstraintPtr )); +NLM_EXTERN CDSGeneProtQualConstraintPtr LIBCALL CDSGeneProtQualConstraintNew PROTO (( void )); +NLM_EXTERN CDSGeneProtQualConstraintPtr LIBCALL CDSGeneProtQualConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL CDSGeneProtQualConstraintAsnWrite PROTO (( CDSGeneProtQualConstraintPtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define Sequence_constraint_rnamol_any 0 +#define Sequence_constraint_rnamol_genomic 1 +#define Sequence_constraint_rnamol_precursor_RNA 2 +#define Sequence_constraint_rnamol_mRNA 3 +#define Sequence_constraint_rnamol_rRNA 4 +#define Sequence_constraint_rnamol_tRNA 5 +#define Sequence_constraint_rnamol_snRNA 6 +#define Sequence_constraint_rnamol_scRNA 7 +#define Sequence_constraint_rnamol_genomic_mRNA 8 +#define Sequence_constraint_rnamol_cRNA 9 +#define Sequence_constraint_rnamol_snoRNA 10 +#define Sequence_constraint_rnamol_transcribed_RNA 11 +#define Sequence_constraint_rnamol_ncRNA 12 +#define Sequence_constraint_rnamol_transfer_messenger_RNA 13 + +typedef ValNodePtr SequenceConstraintMolTypeConstraintPtr; +typedef ValNode SequenceConstraintMolTypeConstraint; +#define SequenceConstraintMolTypeConstraint_any 1 +#define SequenceConstraintMolTypeConstraint_nucleotide 2 +#define SequenceConstraintMolTypeConstraint_dna 3 +#define SequenceConstraintMolTypeConstraint_rna 4 +#define SequenceConstraintMolTypeConstraint_protein 5 + + +NLM_EXTERN SequenceConstraintMolTypeConstraintPtr LIBCALL SequenceConstraintMolTypeConstraintFree PROTO ((SequenceConstraintMolTypeConstraintPtr )); +NLM_EXTERN SequenceConstraintMolTypeConstraintPtr LIBCALL SequenceConstraintMolTypeConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL SequenceConstraintMolTypeConstraintAsnWrite PROTO (( SequenceConstraintMolTypeConstraintPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* SequenceConstraint +* +**************************************************/ +typedef struct struct_Sequence_constraint { + ValNodePtr seqtype; + struct struct_String_constraint PNTR id; + Uint2 feature; +} SequenceConstraint, PNTR SequenceConstraintPtr; + + +NLM_EXTERN SequenceConstraintPtr LIBCALL SequenceConstraintFree PROTO ((SequenceConstraintPtr )); +NLM_EXTERN SequenceConstraintPtr LIBCALL SequenceConstraintNew PROTO (( void )); +NLM_EXTERN SequenceConstraintPtr LIBCALL SequenceConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL SequenceConstraintAsnWrite PROTO (( SequenceConstraintPtr , AsnIoPtr, AsnTypePtr)); + +typedef ValNodePtr ConstraintChoicePtr; +typedef ValNode ConstraintChoice; +#define ConstraintChoice_string 1 +#define ConstraintChoice_location 2 +#define ConstraintChoice_source 3 +#define ConstraintChoice_cdsgeneprot_qual 4 +#define ConstraintChoice_cdsgeneprot_pseudo 5 +#define ConstraintChoice_sequence 6 + + +NLM_EXTERN ConstraintChoicePtr LIBCALL ConstraintChoiceFree PROTO ((ConstraintChoicePtr )); +NLM_EXTERN ConstraintChoicePtr LIBCALL ConstraintChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL ConstraintChoiceAsnWrite PROTO (( ConstraintChoicePtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* ConstraintChoiceSet +* +**************************************************/ +typedef ValNode ConstraintChoiceSet; +typedef ValNodePtr ConstraintChoiceSetPtr; +#define ConstraintChoiceSetNew() ValNodeNew(NULL) + +#ifdef NLM_GENERATED_CODE_PROTO + +NLM_EXTERN ConstraintChoiceSetPtr LIBCALL ConstraintChoiceSetFree PROTO ((ConstraintChoiceSetPtr )); +NLM_EXTERN ConstraintChoiceSetPtr LIBCALL ConstraintChoiceSetNew PROTO (( void )); +NLM_EXTERN ConstraintChoiceSetPtr LIBCALL ConstraintChoiceSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL ConstraintChoiceSetAsnWrite PROTO (( ConstraintChoiceSetPtr , AsnIoPtr, AsnTypePtr)); + +#endif /* NLM_GENERATED_CODE_PROTO */ + + + +/************************************************** +* +* TextPortion +* +**************************************************/ +typedef struct struct_Text_portion { + CharPtr left_text; + Uint1 include_left; + CharPtr right_text; + Uint1 include_right; + Uint1 inside; + Uint1 case_sensitive; + Uint1 whole_word; +} TextPortion, PNTR TextPortionPtr; + + +NLM_EXTERN TextPortionPtr LIBCALL TextPortionFree PROTO ((TextPortionPtr )); +NLM_EXTERN TextPortionPtr LIBCALL TextPortionNew PROTO (( void )); +NLM_EXTERN TextPortionPtr LIBCALL TextPortionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL TextPortionAsnWrite PROTO (( TextPortionPtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define Field_edit_location_anywhere 0 +#define Field_edit_location_beginning 1 +#define Field_edit_location_end 2 + + + +/************************************************** +* +* FieldEdit +* +**************************************************/ +typedef struct struct_Field_edit { + CharPtr find_txt; + CharPtr repl_txt; + Uint2 location; +} FieldEdit, PNTR FieldEditPtr; + + +NLM_EXTERN FieldEditPtr LIBCALL FieldEditFree PROTO ((FieldEditPtr )); +NLM_EXTERN FieldEditPtr LIBCALL FieldEditNew PROTO (( void )); +NLM_EXTERN FieldEditPtr LIBCALL FieldEditAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL FieldEditAsnWrite PROTO (( FieldEditPtr , AsnIoPtr, AsnTypePtr)); + +typedef ValNodePtr FieldTypePtr; +typedef ValNode FieldType; +#define FieldType_source_qual 1 +#define FieldType_feature_field 2 +#define FieldType_cds_gene_prot 3 +#define FieldType_molinfo_field 4 + + +NLM_EXTERN FieldTypePtr LIBCALL FieldTypeFree PROTO ((FieldTypePtr )); +NLM_EXTERN FieldTypePtr LIBCALL FieldTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL FieldTypeAsnWrite PROTO (( FieldTypePtr , AsnIoPtr, AsnTypePtr)); + +typedef ValNodePtr FieldPairTypePtr; +typedef ValNode FieldPairType; +#define FieldPairType_source_qual 1 +#define FieldPairType_feature_field 2 +#define FieldPairType_cds_gene_prot 3 +#define FieldPairType_molinfo_field 4 + + +NLM_EXTERN FieldPairTypePtr LIBCALL FieldPairTypeFree PROTO ((FieldPairTypePtr )); +NLM_EXTERN FieldPairTypePtr LIBCALL FieldPairTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL FieldPairTypeAsnWrite PROTO (( FieldPairTypePtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define ExistingTextOption_replace_old 1 +#define ExistingTextOption_append_semi 2 +#define ExistingTextOption_append_space 3 +#define ExistingTextOption_append_colon 4 +#define ExistingTextOption_append_none 5 +#define ExistingTextOption_prefix_semi 6 +#define ExistingTextOption_prefix_space 7 +#define ExistingTextOption_prefix_colon 8 +#define ExistingTextOption_prefix_none 9 +#define ExistingTextOption_leave_old 10 + + + +/************************************************** +* +* ApplyAction +* +**************************************************/ +typedef struct struct_Apply_action { + ValNodePtr field; + CharPtr value; + Uint2 existing_text; +} ApplyAction, PNTR ApplyActionPtr; + + +NLM_EXTERN ApplyActionPtr LIBCALL ApplyActionFree PROTO ((ApplyActionPtr )); +NLM_EXTERN ApplyActionPtr LIBCALL ApplyActionNew PROTO (( void )); +NLM_EXTERN ApplyActionPtr LIBCALL ApplyActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL ApplyActionAsnWrite PROTO (( ApplyActionPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* EditAction +* +**************************************************/ +typedef struct struct_Edit_action { + struct struct_Field_edit PNTR edit; + ValNodePtr field; +} EditAction, PNTR EditActionPtr; + + +NLM_EXTERN EditActionPtr LIBCALL EditActionFree PROTO ((EditActionPtr )); +NLM_EXTERN EditActionPtr LIBCALL EditActionNew PROTO (( void )); +NLM_EXTERN EditActionPtr LIBCALL EditActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL EditActionAsnWrite PROTO (( EditActionPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* ConvertAction +* +**************************************************/ +typedef struct struct_Convert_action { + ValNodePtr fields; + Uint2 existing_text; +} ConvertAction, PNTR ConvertActionPtr; + + +NLM_EXTERN ConvertActionPtr LIBCALL ConvertActionFree PROTO ((ConvertActionPtr )); +NLM_EXTERN ConvertActionPtr LIBCALL ConvertActionNew PROTO (( void )); +NLM_EXTERN ConvertActionPtr LIBCALL ConvertActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL ConvertActionAsnWrite PROTO (( ConvertActionPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* CopyAction +* +**************************************************/ +typedef struct struct_Copy_action { + ValNodePtr fields; + Uint2 existing_text; +} CopyAction, PNTR CopyActionPtr; + + +NLM_EXTERN CopyActionPtr LIBCALL CopyActionFree PROTO ((CopyActionPtr )); +NLM_EXTERN CopyActionPtr LIBCALL CopyActionNew PROTO (( void )); +NLM_EXTERN CopyActionPtr LIBCALL CopyActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL CopyActionAsnWrite PROTO (( CopyActionPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* SwapAction +* +**************************************************/ +typedef struct struct_Swap_action { + ValNodePtr fields; + ValNodePtr field_to; +} SwapAction, PNTR SwapActionPtr; + + +NLM_EXTERN SwapActionPtr LIBCALL SwapActionFree PROTO ((SwapActionPtr )); +NLM_EXTERN SwapActionPtr LIBCALL SwapActionNew PROTO (( void )); +NLM_EXTERN SwapActionPtr LIBCALL SwapActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL SwapActionAsnWrite PROTO (( SwapActionPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* AECRParseAction +* +**************************************************/ +typedef struct struct_AECRParse_action { + struct struct_Text_portion PNTR portion; + ValNodePtr fields; + Uint1 remove_from_parsed; + Uint2 existing_text; +} AECRParseAction, PNTR AECRParseActionPtr; + + +NLM_EXTERN AECRParseActionPtr LIBCALL AECRParseActionFree PROTO ((AECRParseActionPtr )); +NLM_EXTERN AECRParseActionPtr LIBCALL AECRParseActionNew PROTO (( void )); +NLM_EXTERN AECRParseActionPtr LIBCALL AECRParseActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL AECRParseActionAsnWrite PROTO (( AECRParseActionPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* RemoveAction +* +**************************************************/ +typedef struct struct_Remove_action { + ValNodePtr field; +} RemoveAction, PNTR RemoveActionPtr; + + +NLM_EXTERN RemoveActionPtr LIBCALL RemoveActionFree PROTO ((RemoveActionPtr )); +NLM_EXTERN RemoveActionPtr LIBCALL RemoveActionNew PROTO (( void )); +NLM_EXTERN RemoveActionPtr LIBCALL RemoveActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL RemoveActionAsnWrite PROTO (( RemoveActionPtr , AsnIoPtr, AsnTypePtr)); + +typedef ValNodePtr ActionChoicePtr; +typedef ValNode ActionChoice; +#define ActionChoice_apply 1 +#define ActionChoice_edit 2 +#define ActionChoice_convert 3 +#define ActionChoice_copy 4 +#define ActionChoice_swap 5 +#define ActionChoice_remove 6 +#define ActionChoice_parse 7 + + +NLM_EXTERN ActionChoicePtr LIBCALL ActionChoiceFree PROTO ((ActionChoicePtr )); +NLM_EXTERN ActionChoicePtr LIBCALL ActionChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL ActionChoiceAsnWrite PROTO (( ActionChoicePtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define Cap_change_none 0 +#define Cap_change_tolower 1 +#define Cap_change_toupper 2 +#define Cap_change_firstcap 3 + +typedef ValNodePtr ParseSrcOrgChoicePtr; +typedef ValNode ParseSrcOrgChoice; +#define ParseSrcOrgChoice_source_qual 1 +#define ParseSrcOrgChoice_taxname_after_binomial 2 + + +NLM_EXTERN ParseSrcOrgChoicePtr LIBCALL ParseSrcOrgChoiceFree PROTO ((ParseSrcOrgChoicePtr )); +NLM_EXTERN ParseSrcOrgChoicePtr LIBCALL ParseSrcOrgChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL ParseSrcOrgChoiceAsnWrite PROTO (( ParseSrcOrgChoicePtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* ParseSrcOrg +* +**************************************************/ +typedef struct struct_Parse_src_org { + ValNodePtr field; + Uint2 type; +} ParseSrcOrg, PNTR ParseSrcOrgPtr; + + +NLM_EXTERN ParseSrcOrgPtr LIBCALL ParseSrcOrgFree PROTO ((ParseSrcOrgPtr )); +NLM_EXTERN ParseSrcOrgPtr LIBCALL ParseSrcOrgNew PROTO (( void )); +NLM_EXTERN ParseSrcOrgPtr LIBCALL ParseSrcOrgAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL ParseSrcOrgAsnWrite PROTO (( ParseSrcOrgPtr , AsnIoPtr, AsnTypePtr)); + +typedef ValNodePtr ParseSrcPtr; +typedef ValNode ParseSrc; +#define ParseSrc_defline 1 +#define ParseSrc_flatfile 2 +#define ParseSrc_local_id 3 +#define ParseSrc_org 4 +#define ParseSrc_comment 5 +#define ParseSrc_bankit_comment 6 +#define ParseSrc_structured_comment 7 +#define ParseSrc_file_id 8 + + +NLM_EXTERN ParseSrcPtr LIBCALL ParseSrcFree PROTO ((ParseSrcPtr )); +NLM_EXTERN ParseSrcPtr LIBCALL ParseSrcAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL ParseSrcAsnWrite PROTO (( ParseSrcPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* ParseDstOrg +* +**************************************************/ +typedef struct struct_Parse_dst_org { + ValNodePtr field; + Uint2 type; +} ParseDstOrg, PNTR ParseDstOrgPtr; + + +NLM_EXTERN ParseDstOrgPtr LIBCALL ParseDstOrgFree PROTO ((ParseDstOrgPtr )); +NLM_EXTERN ParseDstOrgPtr LIBCALL ParseDstOrgNew PROTO (( void )); +NLM_EXTERN ParseDstOrgPtr LIBCALL ParseDstOrgAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL ParseDstOrgAsnWrite PROTO (( ParseDstOrgPtr , AsnIoPtr, AsnTypePtr)); + +typedef ValNodePtr ParseDestPtr; +typedef ValNode ParseDest; +#define ParseDest_defline 1 +#define ParseDest_org 2 +#define ParseDest_featqual 3 +#define ParseDest_dbxref 4 + + +NLM_EXTERN ParseDestPtr LIBCALL ParseDestFree PROTO ((ParseDestPtr )); +NLM_EXTERN ParseDestPtr LIBCALL ParseDestAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL ParseDestAsnWrite PROTO (( ParseDestPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* LocationInterval +* +**************************************************/ +typedef struct struct_Location_interval { + Int4 from; + Int4 to; +} LocationInterval, PNTR LocationIntervalPtr; + + +NLM_EXTERN LocationIntervalPtr LIBCALL LocationIntervalFree PROTO ((LocationIntervalPtr )); +NLM_EXTERN LocationIntervalPtr LIBCALL LocationIntervalNew PROTO (( void )); +NLM_EXTERN LocationIntervalPtr LIBCALL LocationIntervalAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL LocationIntervalAsnWrite PROTO (( LocationIntervalPtr , AsnIoPtr, AsnTypePtr)); + +typedef ValNodePtr LocationChoicePtr; +typedef ValNode LocationChoice; +#define LocationChoice_interval 1 +#define LocationChoice_whole_sequence 2 + + +NLM_EXTERN LocationChoicePtr LIBCALL LocationChoiceFree PROTO ((LocationChoicePtr )); +NLM_EXTERN LocationChoicePtr LIBCALL LocationChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL LocationChoiceAsnWrite PROTO (( LocationChoicePtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* SequenceList +* +**************************************************/ +typedef ValNode SequenceList; +typedef ValNodePtr SequenceListPtr; +#define SequenceListNew() ValNodeNew(NULL) + +#ifdef NLM_GENERATED_CODE_PROTO + +NLM_EXTERN SequenceListPtr LIBCALL SequenceListFree PROTO ((SequenceListPtr )); +NLM_EXTERN SequenceListPtr LIBCALL SequenceListNew PROTO (( void )); +NLM_EXTERN SequenceListPtr LIBCALL SequenceListAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL SequenceListAsnWrite PROTO (( SequenceListPtr , AsnIoPtr, AsnTypePtr)); + +#endif /* NLM_GENERATED_CODE_PROTO */ + +typedef ValNodePtr SequenceListChoicePtr; +typedef ValNode SequenceListChoice; +#define SequenceListChoice_list 1 +#define SequenceListChoice_all 2 + + +NLM_EXTERN SequenceListChoicePtr LIBCALL SequenceListChoiceFree PROTO ((SequenceListChoicePtr )); +NLM_EXTERN SequenceListChoicePtr LIBCALL SequenceListChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL SequenceListChoiceAsnWrite PROTO (( SequenceListChoicePtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* ApplyFeatureAction +* +**************************************************/ +typedef struct struct_Apply_feature_action { + Uint2 type; + Uint1 partial5; + Uint1 partial3; + Uint1 plus_strand; + ValNodePtr location; + ValNodePtr seq_list; + Uint1 add_redundant; + Uint1 add_mrna; + Uint1 apply_to_parts; + Int4 only_seg_num; + ValNodePtr fields; +} ApplyFeatureAction, PNTR ApplyFeatureActionPtr; + + +NLM_EXTERN ApplyFeatureActionPtr LIBCALL ApplyFeatureActionFree PROTO ((ApplyFeatureActionPtr )); +NLM_EXTERN ApplyFeatureActionPtr LIBCALL ApplyFeatureActionNew PROTO (( void )); +NLM_EXTERN ApplyFeatureActionPtr LIBCALL ApplyFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL ApplyFeatureActionAsnWrite PROTO (( ApplyFeatureActionPtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* RemoveFeatureAction +* +**************************************************/ +typedef struct struct_Remove_feature_action { + Uint2 type; + ValNodePtr constraint; +} RemoveFeatureAction, PNTR RemoveFeatureActionPtr; + + +NLM_EXTERN RemoveFeatureActionPtr LIBCALL RemoveFeatureActionFree PROTO ((RemoveFeatureActionPtr )); +NLM_EXTERN RemoveFeatureActionPtr LIBCALL RemoveFeatureActionNew PROTO (( void )); +NLM_EXTERN RemoveFeatureActionPtr LIBCALL RemoveFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL RemoveFeatureActionAsnWrite PROTO (( RemoveFeatureActionPtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define Feature_location_strand_from_any 0 +#define Feature_location_strand_from_plus 1 +#define Feature_location_strand_from_minus 2 +#define Feature_location_strand_from_unknown 3 +#define Feature_location_strand_from_both 4 + +/* following #defines are for enumerated type, not used by object loaders */ +#define Feature_location_strand_to_plus 1 +#define Feature_location_strand_to_minus 2 +#define Feature_location_strand_to_unknown 3 +#define Feature_location_strand_to_both 4 +#define Feature_location_strand_to_reverse 5 + + + +/************************************************** +* +* EditLocationStrand +* +**************************************************/ +typedef struct struct_Edit_location_strand { + Uint2 strand_from; + Uint2 strand_to; +} EditLocationStrand, PNTR EditLocationStrandPtr; + + +NLM_EXTERN EditLocationStrandPtr LIBCALL EditLocationStrandFree PROTO ((EditLocationStrandPtr )); +NLM_EXTERN EditLocationStrandPtr LIBCALL EditLocationStrandNew PROTO (( void )); +NLM_EXTERN EditLocationStrandPtr LIBCALL EditLocationStrandAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL EditLocationStrandAsnWrite PROTO (( EditLocationStrandPtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define Partial_5_set_constraint_all 0 +#define Partial_5_set_constraint_at_end 1 +#define Partial_5_set_constraint_bad_start 2 +#define Partial_5_set_constraint_frame_not_one 3 + + + +/************************************************** +* +* Partial5SetAction +* +**************************************************/ +typedef struct struct_Partial_5_set_action { + Uint2 constraint; + Uint1 extend; +} Partial5SetAction, PNTR Partial5SetActionPtr; + + +NLM_EXTERN Partial5SetActionPtr LIBCALL Partial5SetActionFree PROTO ((Partial5SetActionPtr )); +NLM_EXTERN Partial5SetActionPtr LIBCALL Partial5SetActionNew PROTO (( void )); +NLM_EXTERN Partial5SetActionPtr LIBCALL Partial5SetActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL Partial5SetActionAsnWrite PROTO (( Partial5SetActionPtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define Partial_5_clear_constraint_all 0 +#define Partial_5_clear_constraint_not_at_end 1 +#define Partial_5_clear_constraint_good_start 2 + +/* following #defines are for enumerated type, not used by object loaders */ +#define Partial_3_set_constraint_all 0 +#define Partial_3_set_constraint_at_end 1 +#define Partial_3_set_constraint_bad_end 2 + + + +/************************************************** +* +* Partial3SetAction +* +**************************************************/ +typedef struct struct_Partial_3_set_action { + Uint2 constraint; + Uint1 extend; +} Partial3SetAction, PNTR Partial3SetActionPtr; + + +NLM_EXTERN Partial3SetActionPtr LIBCALL Partial3SetActionFree PROTO ((Partial3SetActionPtr )); +NLM_EXTERN Partial3SetActionPtr LIBCALL Partial3SetActionNew PROTO (( void )); +NLM_EXTERN Partial3SetActionPtr LIBCALL Partial3SetActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL Partial3SetActionAsnWrite PROTO (( Partial3SetActionPtr , AsnIoPtr, AsnTypePtr)); + +/* following #defines are for enumerated type, not used by object loaders */ +#define Partial_3_clear_constraint_all 0 +#define Partial_3_clear_constraint_not_at_end 1 +#define Partial_3_clear_constraint_good_end 2 + +/* following #defines are for enumerated type, not used by object loaders */ +#define Convert_location_type_join 1 +#define Convert_location_type_order 2 +#define Convert_location_type_merge 3 + +typedef ValNodePtr LocationEditTypePtr; +typedef ValNode LocationEditType; +#define LocationEditType_strand 1 +#define LocationEditType_set_5_partial 2 +#define LocationEditType_clear_5_partial 3 +#define LocationEditType_set_3_partial 4 +#define LocationEditType_clear_3_partial 5 +#define LocationEditType_convert 6 + + +NLM_EXTERN LocationEditTypePtr LIBCALL LocationEditTypeFree PROTO ((LocationEditTypePtr )); +NLM_EXTERN LocationEditTypePtr LIBCALL LocationEditTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL LocationEditTypeAsnWrite PROTO (( LocationEditTypePtr , AsnIoPtr, AsnTypePtr)); + + + +/************************************************** +* +* EditFeatureLocationAction +* +**************************************************/ +typedef struct struct_Edit_feature_location_action { + Uint2 type; + ValNodePtr action; + ValNodePtr constraint; +} EditFeatureLocationAction, PNTR EditFeatureLocationActionPtr; + + +NLM_EXTERN EditFeatureLocationActionPtr LIBCALL EditFeatureLocationActionFree PROTO ((EditFeatureLocationActionPtr )); +NLM_EXTERN EditFeatureLocationActionPtr LIBCALL EditFeatureLocationActionNew PROTO (( void )); +NLM_EXTERN EditFeatureLocationActionPtr LIBCALL EditFeatureLocationActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL EditFeatureLocationActionAsnWrite PROTO (( EditFeatureLocationActionPtr , AsnIoPtr, AsnTypePtr)); + +typedef ValNodePtr MacroActionChoicePtr; +typedef ValNode MacroActionChoice; +#define MacroActionChoice_aecr 1 +#define MacroActionChoice_parse 2 +#define MacroActionChoice_add_feature 3 +#define MacroActionChoice_remove_feature 4 +#define MacroActionChoice_edit_location 5 + + +NLM_EXTERN MacroActionChoicePtr LIBCALL MacroActionChoiceFree PROTO ((MacroActionChoicePtr )); +NLM_EXTERN MacroActionChoicePtr LIBCALL MacroActionChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); +NLM_EXTERN Boolean LIBCALL MacroActionChoiceAsnWrite PROTO (( MacroActionChoicePtr , AsnIoPtr, AsnTypePtr)); + +#ifdef __cplusplus +/* { */ } +#endif + +#endif /* _objmacro_ */ + +#undef NLM_EXTERN +#ifdef NLM_EXPORT +#define NLM_EXTERN NLM_EXPORT +#else +#define NLM_EXTERN +#endif + |