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#ifndef SKIP_DOXYGEN_PROCESSING
static char const rcsid[] =
"$Id: blast_program.c,v 1.3 2005/11/16 14:27:03 madden Exp $";
#endif /* SKIP_DOXYGEN_PROCESSING */
/* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
* Author: Christiam Camacho / Ilya Dondoshansky
*
*/
/** @file blast_program.c
* Implementation auxiliary functions to determine traits of the various BLAST
* programs supported by core BLAST
*/
#include <algo/blast/core/blast_program.h>
#define SAFE_CAST_INT_TO_BOOLEAN(p) (((p) != 0) ? TRUE : FALSE)
/* Classify query sequence */
Boolean Blast_QueryIsProtein(EBlastProgramType p)
{ return SAFE_CAST_INT_TO_BOOLEAN(p & PROTEIN_QUERY_MASK); }
Boolean Blast_QueryIsNucleotide(EBlastProgramType p)
{ return SAFE_CAST_INT_TO_BOOLEAN(p & NUCLEOTIDE_QUERY_MASK); }
Boolean Blast_QueryIsPssm(EBlastProgramType p)
{ return SAFE_CAST_INT_TO_BOOLEAN(p & PSSM_QUERY_MASK); }
/* Classify subject sequence */
Boolean Blast_SubjectIsProtein(EBlastProgramType p)
{ return SAFE_CAST_INT_TO_BOOLEAN(p & PROTEIN_SUBJECT_MASK); }
Boolean Blast_SubjectIsNucleotide(EBlastProgramType p)
{ return SAFE_CAST_INT_TO_BOOLEAN(p & NUCLEOTIDE_SUBJECT_MASK); }
Boolean Blast_SubjectIsPssm(EBlastProgramType p)
{ return SAFE_CAST_INT_TO_BOOLEAN(p & PSSM_SUBJECT_MASK); }
/* Handle translated searches */
Boolean Blast_QueryIsTranslated(EBlastProgramType p)
{ return SAFE_CAST_INT_TO_BOOLEAN(p & TRANSLATED_QUERY_MASK); }
Boolean Blast_SubjectIsTranslated(EBlastProgramType p)
{ return SAFE_CAST_INT_TO_BOOLEAN(p & TRANSLATED_SUBJECT_MASK); }
/* Handle special programs */
Boolean Blast_ProgramIsPsiBlast(EBlastProgramType p)
{ return SAFE_CAST_INT_TO_BOOLEAN(p & PSSM_QUERY_MASK); }
Boolean Blast_ProgramIsPhiBlast(EBlastProgramType p)
{ return SAFE_CAST_INT_TO_BOOLEAN(p & PATTERN_QUERY_MASK); }
Boolean Blast_ProgramIsRpsBlast(EBlastProgramType p)
{ return SAFE_CAST_INT_TO_BOOLEAN(p & PSSM_SUBJECT_MASK); }
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