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/* $Id: link_hsps.h,v 1.14 2004/09/23 14:57:46 dondosha Exp $
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's offical duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
* Author: Ilya Dondoshansky
*
*/
/** @file link_hsps.h
* Functions to link HSPs using sum statistics
*/
#ifndef __LINK_HSPS__
#define __LINK_HSPS__
#include <algo/blast/core/blast_hits.h>
#ifdef __cplusplus
extern "C" {
#endif
/** Link HSPs using sum statistics.
* @param program_number BLAST program [in]
* @param hsp_list List of HSPs [in]
* @param query_info Query information block [in]
* @param subject_length Subject sequence length [in]
* @param sbp Scoring and statistical data [in]
* @param link_hsp_params Parameters for linking of HSPs [in]
* @param gapped_calculation Is this a gapped search? [in]
*/
Int2
BLAST_LinkHsps(EBlastProgramType program_number, BlastHSPList* hsp_list,
BlastQueryInfo* query_info, Int4 subject_length,
BlastScoreBlk* sbp, const BlastLinkHSPParameters* link_hsp_params,
Boolean gapped_calculation);
#ifdef __cplusplus
}
#endif
#endif /* !__LINK_HSPS__ */
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