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/* cn3dshim.h
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information (NCBI)
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government do not place any restriction on its use or reproduction.
* We would, however, appreciate having the NCBI and the author cited in
* any work or product based on this material
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* ===========================================================================
*
* File Name: cn3dshim.h
*
* Author: Lewis Geer
*
* Version Creation Date: 1/26/99
*
* File Description: Files use in Viewer3D -> OpenGL shim
*
* Modifications:
* $Log: cn3dshim.h,v $
* Revision 6.22 2000/07/08 20:43:57 vakatov
* Get all "#include" out of the 'extern "C" { }' scope; other cleanup...
*
* Revision 6.21 2000/04/04 22:18:42 lewisg
* add defline to ddv, fix seq import bugs, set boundbox
*
* Revision 6.20 2000/03/20 18:18:34 thiessen
* fixed header problem causing network unavailability
*
* Revision 6.19 2000/03/18 00:06:00 lewisg
* add blast, new help, new menus
*
* Revision 6.18 2000/03/15 19:32:20 lewisg
* launch only single udv window
*
* Revision 6.17 2000/03/08 21:46:15 lewisg
* cn3d saves viewport, misc bugs
*
* Revision 6.16 2000/02/19 01:23:59 lewisg
* use ibm, add row tracking code, various bug fixes
*
* Revision 6.15 2000/02/05 01:32:21 lewisg
* add viewmgr, move place freeing is done in ddv, modify visual c++ projects
*
* Revision 6.14 2000/01/06 00:04:43 lewisg
* selection bug fixes, update message outbound, animation APIs moved to vibrant
*
* Revision 6.13 2000/01/04 15:55:51 lewisg
* don't hang on disconnected network and fix memory leak/hang at exit
*
* Revision 6.12 1999/12/27 23:14:12 lewisg
* add colormgr show/hide in Cn3D
*
* Revision 6.11 1999/12/23 21:40:33 lewisg
* move animation controls to dialog
*
* Revision 6.10 1999/12/08 22:58:01 thiessen
* added quality settings for OpenGL rendering
*
* Revision 6.9 1999/12/03 23:17:23 lewisg
* Patrick's new global update msg, argument passing when launching ddv, experimental editing
*
* Revision 6.8 1999/12/01 16:15:54 lewisg
* interim checkin to fix blocking memory leak
*
* Revision 6.7 1999/11/22 14:46:44 thiessen
* moved _OPENGL code blocks to only vibrant and ncbicn3d libraries
*
* Revision 6.6 1999/10/29 14:15:31 thiessen
* ran all Cn3D source through GNU Indent to prettify
*
* Revision 6.5 1999/10/18 15:32:50 lewisg
* move ClearSequences() to cn3dshim.c
*
* Revision 6.4 1999/10/05 23:18:25 lewisg
* add ddv and udv to cn3d with memory management
*
* Revision 6.3 1999/09/21 18:09:15 lewisg
* binary search added to color manager, various bug fixes, etc.
*
* Revision 6.2 1999/04/06 14:23:30 lewisg
* add opengl replacement for viewer3d
*
* Revision 6.1 1999/02/10 23:49:44 lewisg
* use RGB values instead of indexed palette
*
*
* =========================================================================== */
#ifndef _CN3DSHIM_
#define _CN3DSHIM_
#include <shim3d.h>
#include <viewmgr.h>
#ifndef _OPENGL
#include <viewer3d.h>
#endif
#undef NLM_EXTERN
#ifdef NLM_IMPORT
#define NLM_EXTERN NLM_IMPORT
#else
#define NLM_EXTERN extern
#endif
#ifdef __cplusplus
extern "C" {
#endif
#ifndef _OPENGL
extern Viewer3D Cn3D_v3d; /* the 3d view pane */
extern void Cn3D_SaveActiveCam(void);
#endif
typedef struct _Cn3D_AnimateDlg {
WindoW Cn3D_wAnimate;
} Cn3D_AnimateDlg;
typedef struct _Cn3D_ColorData {
DDV_ColorGlobal *pDDVColorGlobal;
Boolean IsUserData; /* is the DDV_ColorGlobal userdata? */
SeqAnnot *sap; /* the current seqalign */
ValNode *pvnsep; /* the current seqentry */
Boolean StandAlone; /* is Cn3D running standalone? */
Uint2 sapprocid, sepprocid, userkey;
WindoW Cn3D_w;
Cn3D_AnimateDlg AnimateDlg;
Boolean UseEntrez; /* turn on entrez use */
Boolean EntrezOn; /* is entrez on? */
Int4 rows; /* number of rows in initial seqalign */
Boolean AlignMode; /* is Cn3D showing alignments or sequences? */
Boolean IBM; /* are we using intersect by master? */
IteM BlastMany; /* blast many menu item */
#ifdef _OPENGL
TOGL_Data *OGL_Data; /* pointer to OGL data */
#endif
} TCn3D_ColorData;
extern TCn3D_ColorData Cn3D_ColorData; /* where all dynamic color info is kept */
/*****************************************************************************
Function: Cn3D_SetVisible()
Purpose: Sets the visible bit for a chain in the biostruc AND the color
manager
Parameters: pColorGlobal
pmmdThis: the chain
fVisible: true if the chain is to be visible
*****************************************************************************/
NLM_EXTERN void Cn3D_SetVisible(DDV_ColorGlobal *pColorGlobal, PMMD pmmdThis,
Boolean fVisible);
/*****************************************************************************
Function: Cn3D_IsVisible()
Purpose: Gets the visible bit for a chain in the biostruc.
Parameters: pColorGlobal
pmmdThis: the chain
Returns: TRUE if visible
*****************************************************************************/
NLM_EXTERN Boolean Cn3D_IsVisible(DDV_ColorGlobal *pColorGlobal,
PMMD pmmdThis);
/*****************************************************************************
Function: ClearSequences()
Purpose: Deletes the Cn3D messagefunc from userdata on the SeqAnnots and
SeqEntries presently displayed.
*****************************************************************************/
extern void ClearSequences(void);
extern void Cn3D_ConstructColorData(TCn3D_ColorData * ColorData
#ifdef _OPENGL
, TOGL_Data * OGL_Data
#endif
, Boolean StandAlone);
/* destructor for Color structure */
extern void Cn3D_DestructColorData(TCn3D_ColorData * ColorData);
extern void fnCHLresidue(PDNMG pdnmgThis,
#ifndef _OPENGL
Viewer3D vvv,
#endif
Boolean highlight);
/*****************************************************************************
Function: Cn3D_FindFeature
Purpose: Finds a feature of a given type in the feature set
Parameters: bsfsp, the head of the BiostrucFeatureSets to search
type, the type of feature to look for
num, the nth occurrence of the feature type
Returns: The feature if found, NULL otherwise
*****************************************************************************/
NLM_EXTERN BiostrucFeature *Cn3D_FindFeature(BiostrucFeatureSetPtr bsfsp,
Int4 type, Int4 num);
/*****************************************************************************
Function: Cn3D_AddFeatureSet
Purpose: Adds a new BiostrucFeatureSet the feature set
Parameters: bsfspp, pointer to the head of the BiostrucFeatureSets
Returns: the feature set
*****************************************************************************/
NLM_EXTERN BiostrucFeatureSetPtr Cn3D_AddFeatureSet(
BiostrucFeatureSetPtr *bsfspp);
#ifdef _OPENGL
extern void LIBCALL Cn3D_Size(TOGL_BoundBox * BoundBox,
PDNMS pdnmsThis);
NLM_EXTERN void Cn3D_Animate(IteM i);
extern Nlm_GrouP LIBCALL OGL_Quality(Nlm_GrouP prnt);
/*****************************************************************************
Function: Cn3D_Matrix2Asn
Purpose: Converts an OpenGL matrix to an ASN.1 GLMatrix
Parameters: glmatrix, the destination ASN.1 GLMatrix
modelmatrixin, the source opengl matrix
*****************************************************************************/
NLM_EXTERN void Cn3D_Matrix2Asn (GLMatrix *glmatrix, void *modelmatrix);
/*****************************************************************************
Function: Cn3D_Asn2Matrix
Purpose: Converts an ASN.1 GLMatrix to an OpenGL matrix
Parameters: modelmatrixin, the destination opengl matrix
glmatrix, the source ASN.1 GLMatrix
*****************************************************************************/
NLM_EXTERN void Cn3D_Asn2Matrix (void *modelmatrix, GLMatrix *glmatrix);
#endif /* _OPENGL */
#ifdef __cplusplus
}
#endif
#undef NLM_EXTERN
#ifdef NLM_EXPORT
#define NLM_EXTERN NLM_EXPORT
#else
#define NLM_EXTERN
#endif
#endif /* _CN3DSHIM_ */
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