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|
Bioseq-set ::= {
level 0 ,
class genbank ,
release "66.0" ,
date
str "Apr 30, 1991 11:19 AM" ,
descr {
title "GenBank release 66.0 converted to ASN.1" } ,
seq-set {
seq {
id {
giim {
id 1 } ,
genbank {
name "AGMAPHAAA" ,
accession "M26844" } } ,
descr {
title "African green monkey alpha-DNA." ,
genbank {
source "African green monkey DNA." ,
keywords {
"alpha DNA" ,
"alphoid repetitive sequence" } ,
date "15-DEC-1989" } ,
org {
taxname "Cercopithecus aethiops" } ,
pub {
pub {
muid 84259347 ,
article {
title {
name "A protein binds to a satellite DNA repeat at three
specific sites that would be brought into mutual proximity by DNA folding in
the nucleosome" } ,
authors {
names
str {
"Strauss,F." ,
"Varshavsky,A." } } ,
from
journal {
title {
name "Cell" } ,
imp {
date
std {
year 1984 } ,
volume "37" ,
pages "889-901" } } } } } } ,
inst {
repr raw ,
mol dna ,
length 208 ,
topology linear ,
strand ds ,
seq-data
ncbi2na '0F74EFE127CD36309FDE201EF7BBDEF0F4DD212F137F57E0425FD9C29EF
7EE83E902A33FA055322A73AE00080CDF57D007A0209F00'H } } ,
set {
level 1 ,
class segset ,
date
str "30-SEP-1988" ,
descr {
title "African green monkey endogenous retroviral 5' LTR, segment 1 of
2." ,
pub {
pub {
muid 85295965 ,
article {
title {
name "Nucleotide sequence analysis and enhancer function of
long terminal repeats associated with an endogenous African green monkey
retroviral DNA" } ,
authors {
names
str {
"Kessel,M." ,
"Khan,A.S." } } ,
from
journal {
title {
name "Mol. Cell. Biol." } ,
imp {
date
std {
year 1985 } ,
volume "5" ,
pages "1335-1342" } } } } } ,
org {
taxname "Cercopithecus aethiops" } } ,
seq-set {
seq {
id {
giim {
id 4 } } ,
descr {
title "African green monkey endogenous retroviral 5' LTR, segment
1 of 2." } ,
inst {
repr seg ,
mol dna ,
length 1162 ,
fuzz
lim gt ,
ext
seg {
whole
giim {
id 2 } ,
null NULL ,
whole
giim {
id 3 } } } } ,
set {
level 3 ,
class parts ,
seq-set {
seq {
id {
giim {
id 2 } ,
genbank {
name "AGMERLTR1" ,
accession "M11391" } } ,
descr {
title "African green monkey endogenous retroviral 5' LTR,
segment 1 of 2." ,
genbank {
source "African green monkey DNA." ,
keywords {
"" } ,
origin "145 bp upstream of HindIII site." } } ,
inst {
repr raw ,
mol dna ,
length 612 ,
topology linear ,
strand ds ,
seq-data
ncbi2na 'F28B8032944007C807CC87C807C887C807C887C807C887C807C
C87C807C887C8874807C809F200944529DC0915950E14AE94DC0915950E14AE94DC09159541B53
BA735004545403D5A0740480042D620316E6AF405070D22C2115E74A5305E750D37E65D09FEE2F
DEEBFF97F301EDEC7293DAAD7BA507DA1328572667243037759EE1F5BAD0BADDD9861479528283
7001CAF713FAE47E96A0D69'H } } ,
seq {
id {
giim {
id 3 } ,
genbank {
name "AGMERLTR2" ,
accession "M11390" } } ,
descr {
title "African green monkey endogenous retroviral 3' LTR,
segment 2 of 2." ,
genbank {
source "African green monkey DNA." ,
keywords {
"" } ,
origin "131 bp upstream of HindIII site." } } ,
inst {
repr raw ,
mol dna ,
length 550 ,
topology linear ,
strand ds ,
seq-data
ncbi2na '00228A81E00CA51001F201F321F201F221F201F221F201F221F
201F221D201F2027C8025114A7702456543852BA537024565506D4EE9CD401151500F5681D0120
010B5880C5466BD0141C348B084579D294C179D434DF99742FFB8BF7BAFFE5FCC07B7B1CA4F6AB
5EE941F284CA15C999C90C0DDD67B87D6EB42EB77663855E54A0A0DC0072BD713C120'H } } } } } } ,
set {
level 1 ,
class nuc-prot ,
date
str "15-JUN-1988" ,
descr {
title "African green monkey BSC-1 cell growth inhibitor, and
translated products" ,
comment "Draft entry and computer-readable sequence for [Proc. Natl.
Acad. Sci. U.S.A. 85, 79-82 (1988)] kindly provided by S.Hanks, 03-DEC-1987." ,
pub {
pub {
muid 88124824 ,
article {
title {
name "Amino acid sequence of the BSC-1 cell growth inhibitor
(polyergin) deduced from the nucleotide sequence of the cDNA" } ,
authors {
names
str {
"Hanks,S." ,
"Armour,R." ,
"Baldwin,J.H." ,
"Maldonado,F." ,
"Spiess,J." ,
"Holley,R.W." } } ,
from
journal {
title {
name "Proc. Natl. Acad. Sci. U.S.A." } ,
imp {
date
std {
year 1988 } ,
volume "85" ,
pages "79-82" } } } } } ,
org {
taxname "Cercopithecus aethiops" } } ,
seq-set {
seq {
id {
giim {
id 5 } ,
genbank {
name "AGMGIBSC1" ,
accession "J03585" } } ,
descr {
title "African green monkey BSC-1 cell growth inhibitor, complete
cds." ,
genbank {
source "African green monkey kidney epithelium, cDNA to mRNA." ,
keywords {
"BSC-1 cell growth inhibitor" ,
"cartilage-inducing factor B" ,
"polyergin" ,
"transforming growth factor type b2" } ,
origin "Unreported." ,
date "15-JUN-1988" } } ,
inst {
repr raw ,
mol rna ,
length 1585 ,
topology linear ,
strand ss ,
seq-data
ncbi2na 'FFFC0A0F424231BFF73EA4F8723EFE402ED93400401004040004004
1DD7E3731FE20FBE7F7FFFFDF787F00107FFF517FF000E471EEE7899FFF8D7937AD1AD99D25EDC
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7505499C4D84902FB80108920A60E9FD7D8EC1E39EF4E0E9F4530212817A8FC0309F11ED5E791F
FB14DC30F134D50300B820F20908FE4ACF8E917513314BAE34801CC0B51CA00004BA821544DD79
C3BCF95D7121F8B441214169A0826E7FA39A5CF9FC80EE4A30F9E5C6D67F13E3F422A372AE80E8
C460540A310E507DEE7A24E56CFCE8BD211D24492AD789F330C53035209379F75F9E6ED5087C81
77053DDC713E90045423E049FDC338FB02DF90392701F7E802E908D00F10E38E30E38E18610E38
E7EC14801308897EBDB49BC0000FF8029AC40'H } ,
annot {
{
data
ftable {
{
data
rna {
type mRNA } ,
location
whole
giim {
id 5 } ,
qual {
{
qual "note" ,
val "polyergin mRNA" } } } ,
{
data
imp {
key "mat_peptide" } ,
location
int {
from 1105 ,
to 1440 ,
id
giim {
id 5 } } ,
qual {
{
qual "note" ,
val "polyergin" } } } } } } } ,
seq {
id {
giim {
id 6 } } ,
descr {
title "polyergin precursor" ,
method concept-trans } ,
inst {
repr raw ,
mol aa ,
length 414 ,
seq-data
iupacaa "MHYCVLSAFLILHLVTVALSLSTCSTLDMDQFMRKRIEAIRGQILSKLKLTSPPE
DYPEPEEVPPEVISIYNSTRDLLQEKASRRAAACERERSDEEYYAKEVYKIDMPPFFPSENAIPPTFYRPYFRIVRFD
VSAMEKNASNLVKAEFRVFRLQNPKARVPEQRIELYQILKSKDLTSPTQRYIDSKVVKTRAEGEWLSFDVTDAVHEWL
HHKDRNLGFKISLHCPCCTFVPSNNYIIPNKSEELEARFAGIDGTSTYTSGDQKTIKSTRKKNSGKTPHLLLMLLPSY
RLESQQTNRRKKRALDAAYCFRNVQDNCCLRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPYLWSSDTQHSRVLSLY
NTINPEASASPCCVSQDLEPLTILYYIGKTPKIEQLSNMIVKSCKCS" } } } ,
annot {
{
data
ftable {
{
data
cdregion {
frame one ,
code {
id 1 } } ,
product
whole
giim {
id 6 } ,
location
int {
from 199 ,
to 1443 ,
id
giim {
id 5 } } ,
qual {
{
qual "note" ,
val "polyergin precursor" } } } } } } } ,
seq {
id {
giim {
id 7 } ,
genbank {
name "AGMKPNRSA" ,
accession "J00337" } } ,
descr {
title "african green monkey kpni family interspersed repeat; ls1." ,
genbank {
source "african green monkey liver cell dna." ,
keywords {
"repetitive sequence" } ,
date "05-DEC-1983" } ,
org {
taxname "Cercopithecus aethiops" } ,
pub {
pub {
muid 83247399 ,
article {
title {
name "kpn i family of long interspersed repeated dna sequences
in primates: polymorphism of family members and evidence for transcription" } ,
authors {
names
str {
"Lerman,M.I." ,
"Thayer,R.E." ,
"Singer,M.F." } } ,
from
journal {
title {
name "Proc. Natl. Acad. Sci. U.S.A." } ,
imp {
date
std {
year 1983 } ,
volume "80" ,
pages "3966-3970" } } } } } } ,
inst {
repr raw ,
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length 1784 ,
topology linear ,
strand ds ,
seq-data
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|
