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/*****************************************************************************
*
* indexpub.c
* indexes a Pub-set by Medline UID
*
*****************************************************************************/
#include "allpub.h"
#define NUMARGS 3
Args myargs[NUMARGS] = {
{ "Input data", "medline.val", "Pub-set", NULL, FALSE, 'i', ARG_DATA_IN, 0.0,0,NULL},
{ "Input data is binary", "T", NULL, NULL, TRUE , 'b', ARG_BOOLEAN, 0.0,0,NULL},
{ "Output index table", "medline.idx", NULL, NULL, FALSE, 't', ARG_FILE_OUT, 0.0,0,NULL}};
Int2 Main(void)
{
AsnIoPtr aip;
AsnTypePtr atp;
DataVal value;
Int4 seekptr, tempseek, uid;
static CharPtr intypes[2] = { "r", "rb" };
Int2 intype;
FILE *fp;
if (! AsnLoad())
Message(MSG_FATAL, "Unable to load allpub parse tree.");
if (! GetArgs("IndexPub 1.0", NUMARGS, myargs))
return 1;
if (myargs[1].intvalue) /* binary input is TRUE */
intype = 1;
else
intype = 0;
if ((aip = AsnIoOpen(myargs[0].strvalue, intypes[intype])) == NULL)
{
Message(MSG_ERROR, "Couldn't open %s", myargs[0].strvalue);
return 1;
}
if ((fp = FileOpen(myargs[2].strvalue, "w")) == NULL)
{
Message(MSG_ERROR, "Couldn't open %s", myargs[2].strvalue);
return 1;
}
atp = PUB_SET;
tempseek = 0L;
while ((atp = AsnReadId(aip, amp, atp)) != NULL)
{
if (atp == PUB_SET_medline_E)
seekptr = tempseek;
if (atp == MEDLINE_ENTRY_uid)
{
AsnReadVal(aip, atp, &value);
uid = value.intvalue;
fprintf(fp, "%d %d\n", uid, seekptr);
}
else
AsnReadVal(aip, atp, NULL);
tempseek = AsnIoTell(aip);
}
aip = AsnIoClose(aip);
FileClose(fp);
return 0;
}
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