blob: 5540b3d32a13d1d7cb5fb427f144bbb1bb49e1f9 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
|
.TH NPS2GPS 1 2005-11-04 NCBI "NCBI Tools User's Manual"
.SH NAME
nps2gps \- convert nucleotide-protein sets to ASN.1 genomic product sets
.SH SYNOPSIS
.B nps2gps
[\|\fB\-\fP\|]
[\|\fB\-L\fP\|]
[\|\fB\-R\fP\|]
[\|\fB\-f\fP\ \fIstr\fP\|]
[\|\fB\-i\fP\ \fIfilename\fP\|]
[\|\fB\-o\fP\ \fIfilename\fP\|]
[\|\fB\-p\fP\ \fIstr\fP\|]
[\|\fB\-r\fP\ \fIstr\fP\|]
[\|\fB\-x\fP\ \fIstr\fP\|]
.SH DESCRIPTION
\fBnps2gps\fP converts NCBI Bioseq-sets from simple nucleotide-protein
sets to full genomic product sets complete with mRNA transcripts,
which it outputs as text ASN.1.
.SH OPTIONS
A summary of options is included below.
.TP
\fB\-\fP
Print usage message
.TP
\fB\-L\fP
Lock components in advance
.TP
\fB\-R\fP
Enable Remote fetching from ID
.TP
\fB\-f\fP\ \fIstr\fP
Substring filter
.TP
\fB\-i\fP\ \fIfilename\fP
Single input file (default = stdin)
.TP
\fB\-o\fP\ \fIfilename\fP
Single output file (default = stdout)
.TP
\fB\-p\fP\ \fIstr\fP
Path to files for batch conversion
.TP
\fB\-r\fP\ \fIstr\fP
Path for results of batch conversion
.TP
\fB\-x\fP\ \fIstr\fP
File selection suffix for batch conversion (default = \fB.ent\fP)
.SH AUTHOR
The National Center for Biotechnology Information.
.SH SEE ALSO
.BR asn2asn (1),
.BR asn2ff (1),
.BR asn2gb (1),
.BR asn2xml (1),
.BR asndhuff (1).
|
