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.TH TBL2ASN 1 2003-04-27 NCBI "NCBI Tools User's Manual"
.SH NAME
tbl2asn \- prepare a GenBank submission using an ASCII feature table
.SH SYNOPSIS
.B tbl2asn
[\|\fB\-\fP\|]
[\|\fB\-a\fP\ \fIstr\fP\|]
[\|\fB\-b\fP\|]
[\|\fB\-c\fP\|]
[\|\fB\-d\fP\|]
[\|\fB\-g\fP\|]
[\|\fB\-f\fP\ \fIfilename\fP\|]
[\|\fB\-k\fP\|]
[\|\fB\-m\fP\|]
[\|\fB\-n\fP\ \fIstr\fP\|]
[\|\fB\-p\fP\ \fIstr\fP\|]
[\|\fB\-q\fP\|]
[\|\fB\-r\fP\ \fIstr\fP\|]
[\|\fB\-s\fP\|]
[\|\fB\-t\fP\ \fIfilename\fP\|]
[\|\fB\-v\fP\|]
[\|\fB\-x\fP\ \fIstr\fP\|]
.SH DESCRIPTION
\fBtbl2asn\fP reads a template along with sequence and table files,
and outputs ASN.1 for submission to GenBank. Thus, the submitter does
not need to read each set of table and sequence files into
Sequin. Furthermore, the template file can contain the organism and
submitter information common to all records, obviating the need to
input these data for each sequence/table pair.
.SH OPTIONS
A summary of options is included below.
.TP
\fB\-\fP
Print usage message
.TP
\fB\-a\fP\ \fIstr\fP
Accession
.TP
\fB\-b\fP
Generate GenBank file
.TP
\fB\-c\fP
Annotate longest ORF
.TP
\fB\-d\fP
Read FASTAs as Delta
.TP
\fB\-f\fP\ \fIfilename\fP
Read only this file
.TP
\fB\-g\fP
Input is a genomic product set
.TP
\fB\-k\fP
Set conflict on mismatch
.TP
\fB\-m\fP
Allow alternative starts
.TP
\fB\-n\fP\ \fIstr\fP
Organism name
.TP
\fB\-p\fP\ \fIstr\fP
Path to files
.TP
\fB\-q\fP
Set sequence ID from input file name
.TP
\fB\-r\fP\ \fIstr\fP
Path for results
.TP
\fB\-s\fP
Read FASTAs as Set
.TP
\fB\-t\fP\ \fIfilename\fP
Read template from \fIfilename\fP
.TP
\fB\-v\fP
Validate
.TP
\fB\-x\fP\ \fIstr\fP
Suffix (default = \fB.fsa\fP)
.SH AUTHOR
The National Center for Biotechnology Information.
.SH SEE ALSO
.BR Psequin (1),
<http://www.ncbi.nlm.nih.gov/Sequin/table.html>
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