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#ifndef _id2sgen_
#define _id2sgen_
#undef NLM_EXTERN
#ifdef NLM_IMPORT
#define NLM_EXTERN NLM_IMPORT
#else
#define NLM_EXTERN extern
#endif
#ifdef __cplusplus
extern "C" { /* } */
#endif
/**************************************************
*
* Generated objects for Module NCBI-Seq-split
* Generated using ASNCODE Revision: 6.0 at May 3, 2004 6:18 PM
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
id2sgenAsnLoad PROTO((void));
/**************************************************
*
* ID2SSeqAnnotInfo
*
**************************************************/
typedef struct struct_ID2S_Seq_annot_Info {
CharPtr name;
Uint1 align;
Uint1 graph;
struct struct_ID2S_Feat_type_Info PNTR feat;
ValNodePtr seq_loc;
} ID2SSeqAnnotInfo, PNTR ID2SSeqAnnotInfoPtr;
NLM_EXTERN ID2SSeqAnnotInfoPtr LIBCALL ID2SSeqAnnotInfoFree PROTO ((ID2SSeqAnnotInfoPtr ));
NLM_EXTERN ID2SSeqAnnotInfoPtr LIBCALL ID2SSeqAnnotInfoNew PROTO (( void ));
NLM_EXTERN ID2SSeqAnnotInfoPtr LIBCALL ID2SSeqAnnotInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SSeqAnnotInfoAsnWrite PROTO (( ID2SSeqAnnotInfoPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2SSplitInfo
*
**************************************************/
typedef struct struct_ID2S_Split_Info {
struct struct_ID2S_Bioseqs_Info PNTR bioseqs_info;
struct struct_ID2S_Chunk_Info PNTR chunks;
} ID2SSplitInfo, PNTR ID2SSplitInfoPtr;
NLM_EXTERN ID2SSplitInfoPtr LIBCALL ID2SSplitInfoFree PROTO ((ID2SSplitInfoPtr ));
NLM_EXTERN ID2SSplitInfoPtr LIBCALL ID2SSplitInfoNew PROTO (( void ));
NLM_EXTERN ID2SSplitInfoPtr LIBCALL ID2SSplitInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SSplitInfoAsnWrite PROTO (( ID2SSplitInfoPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2SBioseqsInfo
*
**************************************************/
typedef struct struct_ID2S_Bioseqs_Info {
struct struct_ID2S_Bioseqs_Info PNTR next;
struct struct_ID2S_Bioseq_Info PNTR info;
struct struct_ID2_Id_Range PNTR bioseqs;
} ID2SBioseqsInfo, PNTR ID2SBioseqsInfoPtr;
NLM_EXTERN ID2SBioseqsInfoPtr LIBCALL ID2SBioseqsInfoFree PROTO ((ID2SBioseqsInfoPtr ));
NLM_EXTERN ID2SBioseqsInfoPtr LIBCALL ID2SBioseqsInfoNew PROTO (( void ));
NLM_EXTERN ID2SBioseqsInfoPtr LIBCALL ID2SBioseqsInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SBioseqsInfoAsnWrite PROTO (( ID2SBioseqsInfoPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2SChunkInfo
*
**************************************************/
typedef struct struct_ID2S_Chunk_Info {
struct struct_ID2S_Chunk_Info PNTR next;
Int4 id;
ValNodePtr content;
} ID2SChunkInfo, PNTR ID2SChunkInfoPtr;
NLM_EXTERN ID2SChunkInfoPtr LIBCALL ID2SChunkInfoFree PROTO ((ID2SChunkInfoPtr ));
NLM_EXTERN ID2SChunkInfoPtr LIBCALL ID2SChunkInfoNew PROTO (( void ));
NLM_EXTERN ID2SChunkInfoPtr LIBCALL ID2SChunkInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SChunkInfoAsnWrite PROTO (( ID2SChunkInfoPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2SBioseqInfo
*
**************************************************/
typedef struct struct_ID2S_Bioseq_Info {
Int4 gap_count;
Uint1 seq_map_has_ref;
struct struct_ID2S_Sequence_Split_Info PNTR sequence_split;
} ID2SBioseqInfo, PNTR ID2SBioseqInfoPtr;
NLM_EXTERN ID2SBioseqInfoPtr LIBCALL ID2SBioseqInfoFree PROTO ((ID2SBioseqInfoPtr ));
NLM_EXTERN ID2SBioseqInfoPtr LIBCALL ID2SBioseqInfoNew PROTO (( void ));
NLM_EXTERN ID2SBioseqInfoPtr LIBCALL ID2SBioseqInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SBioseqInfoAsnWrite PROTO (( ID2SBioseqInfoPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2IdRange
*
**************************************************/
typedef struct struct_ID2_Id_Range {
struct struct_ID2_Id_Range PNTR next;
Int4 start;
Int4 count;
} ID2IdRange, PNTR ID2IdRangePtr;
NLM_EXTERN ID2IdRangePtr LIBCALL ID2IdRangeFree PROTO ((ID2IdRangePtr ));
NLM_EXTERN ID2IdRangePtr LIBCALL ID2IdRangeNew PROTO (( void ));
NLM_EXTERN ID2IdRangePtr LIBCALL ID2IdRangeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2IdRangeAsnWrite PROTO (( ID2IdRangePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2SSequenceSplitInfo
*
**************************************************/
typedef struct struct_ID2S_Sequence_Split_Info {
Int4 block_size;
Int4 chunk_start;
ValNodePtr chunk_blocks;
} ID2SSequenceSplitInfo, PNTR ID2SSequenceSplitInfoPtr;
NLM_EXTERN ID2SSequenceSplitInfoPtr LIBCALL ID2SSequenceSplitInfoFree PROTO ((ID2SSequenceSplitInfoPtr ));
NLM_EXTERN ID2SSequenceSplitInfoPtr LIBCALL ID2SSequenceSplitInfoNew PROTO (( void ));
NLM_EXTERN ID2SSequenceSplitInfoPtr LIBCALL ID2SSequenceSplitInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SSequenceSplitInfoAsnWrite PROTO (( ID2SSequenceSplitInfoPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ID2SChunkContentPtr;
typedef ValNode ID2SChunkContent;
#define ID2SChunkContent_seq_descr 1
#define ID2SChunkContent_seq_annot 2
#define ID2SChunkContent_seq_assembly 3
#define ID2SChunkContent_seq_map 4
#define ID2SChunkContent_seq_data 5
#define ID2SChunkContent_seq_annot_place 6
NLM_EXTERN ID2SChunkContentPtr LIBCALL ID2SChunkContentFree PROTO ((ID2SChunkContentPtr ));
NLM_EXTERN ID2SChunkContentPtr LIBCALL ID2SChunkContentAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SChunkContentAsnWrite PROTO (( ID2SChunkContentPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2SSeqDescrInfo
*
**************************************************/
typedef struct struct_ID2S_Seq_descr_Info {
Int4 type_mask;
struct struct_ID2_Id_Range PNTR bioseqs;
struct struct_ID2_Id_Range PNTR bioseq_sets;
} ID2SSeqDescrInfo, PNTR ID2SSeqDescrInfoPtr;
NLM_EXTERN ID2SSeqDescrInfoPtr LIBCALL ID2SSeqDescrInfoFree PROTO ((ID2SSeqDescrInfoPtr ));
NLM_EXTERN ID2SSeqDescrInfoPtr LIBCALL ID2SSeqDescrInfoNew PROTO (( void ));
NLM_EXTERN ID2SSeqDescrInfoPtr LIBCALL ID2SSeqDescrInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SSeqDescrInfoAsnWrite PROTO (( ID2SSeqDescrInfoPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2SSeqAssemblyInfo
*
**************************************************/
typedef struct struct_ID2S_Seq_assembly_Info {
struct struct_ID2_Id_Range PNTR bioseqs;
} ID2SSeqAssemblyInfo, PNTR ID2SSeqAssemblyInfoPtr;
NLM_EXTERN ID2SSeqAssemblyInfoPtr LIBCALL ID2SSeqAssemblyInfoFree PROTO ((ID2SSeqAssemblyInfoPtr ));
NLM_EXTERN ID2SSeqAssemblyInfoPtr LIBCALL ID2SSeqAssemblyInfoNew PROTO (( void ));
NLM_EXTERN ID2SSeqAssemblyInfoPtr LIBCALL ID2SSeqAssemblyInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SSeqAssemblyInfoAsnWrite PROTO (( ID2SSeqAssemblyInfoPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2SSeqMapInfo
*
**************************************************/
#define ID2SSeqMapInfo ValNode
#define ID2SSeqMapInfoPtr ValNodePtr
#define ID2SSeqMapInfoFree ValNodeFree
#define ID2SSeqMapInfoNew ValNodeNew
#define ID2SSeqMapInfoAsnRead ValNodeAsnRead
#define ID2SSeqMapInfoAsnWrite ValNodeAsnWrite
/**************************************************
*
* ID2SSeqDataInfo
*
**************************************************/
#define ID2SSeqDataInfo ValNode
#define ID2SSeqDataInfoPtr ValNodePtr
#define ID2SSeqDataInfoFree ValNodeFree
#define ID2SSeqDataInfoNew ValNodeNew
#define ID2SSeqDataInfoAsnRead ValNodeAsnRead
#define ID2SSeqDataInfoAsnWrite ValNodeAsnWrite
/**************************************************
*
* ID2SSeqAnnotPlaceInfo
*
**************************************************/
typedef struct struct_ID2S_Seq_annot_place_Info {
CharPtr name;
struct struct_ID2_Id_Range PNTR bioseqs;
struct struct_ID2_Id_Range PNTR bioseq_sets;
} ID2SSeqAnnotPlaceInfo, PNTR ID2SSeqAnnotPlaceInfoPtr;
NLM_EXTERN ID2SSeqAnnotPlaceInfoPtr LIBCALL ID2SSeqAnnotPlaceInfoFree PROTO ((ID2SSeqAnnotPlaceInfoPtr ));
NLM_EXTERN ID2SSeqAnnotPlaceInfoPtr LIBCALL ID2SSeqAnnotPlaceInfoNew PROTO (( void ));
NLM_EXTERN ID2SSeqAnnotPlaceInfoPtr LIBCALL ID2SSeqAnnotPlaceInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SSeqAnnotPlaceInfoAsnWrite PROTO (( ID2SSeqAnnotPlaceInfoPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2SFeatTypeInfo
*
**************************************************/
typedef struct struct_ID2S_Feat_type_Info {
struct struct_ID2S_Feat_type_Info PNTR next;
Int4 type;
ValNodePtr subtypes;
} ID2SFeatTypeInfo, PNTR ID2SFeatTypeInfoPtr;
NLM_EXTERN ID2SFeatTypeInfoPtr LIBCALL ID2SFeatTypeInfoFree PROTO ((ID2SFeatTypeInfoPtr ));
NLM_EXTERN ID2SFeatTypeInfoPtr LIBCALL ID2SFeatTypeInfoNew PROTO (( void ));
NLM_EXTERN ID2SFeatTypeInfoPtr LIBCALL ID2SFeatTypeInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SFeatTypeInfoAsnWrite PROTO (( ID2SFeatTypeInfoPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ID2SeqLocPtr;
typedef ValNode ID2SeqLoc;
#define ID2SeqLoc_gi_whole 1
#define ID2SeqLoc_interval 2
#define ID2SeqLoc_packed_ints 3
#define ID2SeqLoc_gi_whole_range 4
#define ID2SeqLoc_loc_set 5
#define ID2SeqLoc_seq_loc 6
NLM_EXTERN ID2SeqLocPtr LIBCALL ID2SeqLocFree PROTO ((ID2SeqLocPtr ));
NLM_EXTERN ID2SeqLocPtr LIBCALL ID2SeqLocAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SeqLocAsnWrite PROTO (( ID2SeqLocPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2SChunk
*
**************************************************/
typedef struct struct_ID2S_Chunk {
struct struct_ID2S_Chunk_Data PNTR data;
} ID2SChunk, PNTR ID2SChunkPtr;
NLM_EXTERN ID2SChunkPtr LIBCALL ID2SChunkFree PROTO ((ID2SChunkPtr ));
NLM_EXTERN ID2SChunkPtr LIBCALL ID2SChunkNew PROTO (( void ));
NLM_EXTERN ID2SChunkPtr LIBCALL ID2SChunkAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SChunkAsnWrite PROTO (( ID2SChunkPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2SChunkData
*
**************************************************/
typedef struct struct_ID2S_Chunk_Data {
struct struct_ID2S_Chunk_Data PNTR next;
ValNodePtr Id_id;
ValNodePtr descrs;
struct struct_Seq_annot PNTR annots;
struct struct_Seq_align PNTR assembly;
struct struct_Seq_literal PNTR seq_map;
struct struct_Seq_literal PNTR seq_data;
} ID2SChunkData, PNTR ID2SChunkDataPtr;
NLM_EXTERN ID2SChunkDataPtr LIBCALL ID2SChunkDataFree PROTO ((ID2SChunkDataPtr ));
NLM_EXTERN ID2SChunkDataPtr LIBCALL ID2SChunkDataNew PROTO (( void ));
NLM_EXTERN ID2SChunkDataPtr LIBCALL ID2SChunkDataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SChunkDataAsnWrite PROTO (( ID2SChunkDataPtr , AsnIoPtr, AsnTypePtr));
#ifdef NLM_GENERATED_CODE_PROTO
typedef ValNodePtr Id_idPtr;
typedef ValNode Id_id;
#endif /* NLM_GENERATED_CODE_PROTO */
#define Id_id_bioseq_set 1
#define Id_id_gi 2
#ifdef NLM_GENERATED_CODE_PROTO
static Id_idPtr LIBCALL Id_idFree PROTO ((Id_idPtr ));
static Id_idPtr LIBCALL Id_idAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
static Boolean LIBCALL Id_idAsnWrite PROTO (( Id_idPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/**************************************************
*
* ID2Interval
*
**************************************************/
typedef struct struct_ID2_Interval {
Int4 gi;
Int4 start;
Int4 length;
} ID2Interval, PNTR ID2IntervalPtr;
NLM_EXTERN ID2IntervalPtr LIBCALL ID2IntervalFree PROTO ((ID2IntervalPtr ));
NLM_EXTERN ID2IntervalPtr LIBCALL ID2IntervalNew PROTO (( void ));
NLM_EXTERN ID2IntervalPtr LIBCALL ID2IntervalAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2IntervalAsnWrite PROTO (( ID2IntervalPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2PackedSeqInts
*
**************************************************/
typedef struct struct_ID2_Packed_Seq_ints {
Int4 gi;
struct struct_ID2_Seq_range PNTR intervals;
} ID2PackedSeqInts, PNTR ID2PackedSeqIntsPtr;
NLM_EXTERN ID2PackedSeqIntsPtr LIBCALL ID2PackedSeqIntsFree PROTO ((ID2PackedSeqIntsPtr ));
NLM_EXTERN ID2PackedSeqIntsPtr LIBCALL ID2PackedSeqIntsNew PROTO (( void ));
NLM_EXTERN ID2PackedSeqIntsPtr LIBCALL ID2PackedSeqIntsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2PackedSeqIntsAsnWrite PROTO (( ID2PackedSeqIntsPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ID2SeqRange
*
**************************************************/
typedef struct struct_ID2_Seq_range {
struct struct_ID2_Seq_range PNTR next;
Int4 start;
Int4 length;
} ID2SeqRange, PNTR ID2SeqRangePtr;
NLM_EXTERN ID2SeqRangePtr LIBCALL ID2SeqRangeFree PROTO ((ID2SeqRangePtr ));
NLM_EXTERN ID2SeqRangePtr LIBCALL ID2SeqRangeNew PROTO (( void ));
NLM_EXTERN ID2SeqRangePtr LIBCALL ID2SeqRangeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ID2SeqRangeAsnWrite PROTO (( ID2SeqRangePtr , AsnIoPtr, AsnTypePtr));
#ifdef __cplusplus
/* { */ }
#endif
#endif /* _id2sgen_ */
#undef NLM_EXTERN
#ifdef NLM_EXPORT
#define NLM_EXTERN NLM_EXPORT
#else
#define NLM_EXTERN
#endif
|
