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Source: pyranges
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>,
Étienne Mollier <emollier@debian.org>
Section: python
Testsuite: autopkgtest-pkg-pybuild
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
python3-setuptools,
python3-all,
python3-ncls <!nocheck>,
python3-pyrle <!nocheck>,
python3-pytest <!nocheck>,
python3-pytest-xdist <!nocheck>,
python3-sorted-nearest,
python3-hypothesis,
bedtools,
samtools
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/pyranges
Vcs-Git: https://salsa.debian.org/med-team/pyranges.git
Homepage: https://github.com/biocore-ntnu/pyranges
Rules-Requires-Root: no
Package: python3-pyranges
Architecture: all
Depends: ${python3:Depends},
${misc:Depends}
Suggests: python-pyranges-doc
Description: 2D representation of genomic intervals and their annotations
A PyRanges object must have the columns Chromosome, Start and
End. These describe the genomic position and function as implicit row
labels. A Strand column is optional and adds strand information to the
intervals. Any other columns are allowed and are considered metadata.
.
The structure can be filled from .bed, .bam or .gff files, also from
tabular or textual representations.
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