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#!/usr/bin/make -f
# See debhelper(7) (uncomment to enable)
# output every command that modifies files on the build system.
#export DH_VERBOSE = 1
export PYBUILD_NAME=pyranges
export PYBUILD_BEFORE_TEST=cp -av {dir}/tests/*.bed {build_dir}/tests && \
cp -av {dir}/tests/test_data {build_dir}/tests && \
cp -av {dir}/tests/data {build_dir}/tests && \
cp -av {dir}/pyranges/example_data {build_dir}/pyranges
export PYBUILD_TEST_ARGS=-n $(shell nproc)
%:
dh $@ --buildsystem=pybuild
execute_after_dh_auto_build:
echo 'Generating corresponding files ...'
cat debian/missing-sources/test_sorted.sam| samtools view -Sb - > tests/test_data/test_sorted.bam
cat debian/missing-sources/control.sam| samtools view -Sb - > pyranges/example_data/control.bam
samtools index tests/test_data/test_sorted.bam tests/test_data/test_sorted.bam.bai
samtools index pyranges/example_data/control.bam pyranges/example_data/control.bam.bai
execute_after_dh_install:
find debian/ -name *.bam* | xargs rm -rf
find debian/ -name 'hi' | xargs rm -rf
find debian/ -name '.hypothesis' | xargs rm -rf
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