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import os
from setuptools import find_packages
from distutils.core import setup
__version__ = open("pyranges/version.py").readline().split(" = ")[1].replace(
'"', '').strip()
install_requires = [
"cython", "pandas", "ncls>=0.0.62", "tabulate", "sorted_nearest>=0.0.33", "pyrle",
"natsort"] #,
# optional_requires = ["bamread", "pybigwig", "ray"]
if os.getenv("TRAVIS"):
install_requires.append("bamread pybigwig".split())
setup(
name="pyranges",
packages=find_packages(),
package_data={
'pyranges': [
'example_data/*.bed', 'example_data/*.gtf', 'example_data/*.bam',
'example_data/*.bam.bai', 'example_data/*.gz', 'example_data/*.bw'
]
},
# data_files = ["LICENSE"],
include_dirs=["."],
version=__version__,
description="GenomicRanges for Python.",
author="Endre Bakken Stovner",
author_email="endrebak85@gmail.com",
url="http://github.com/endrebak/pyranges",
keywords=["Bioinformatics"],
license="MIT",
install_requires=install_requires,
classifiers=[
"Programming Language :: Python :: 3",
"Development Status :: 4 - Beta", "Environment :: Other Environment",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
'License :: OSI Approved :: MIT License',
"Operating System :: POSIX :: Linux",
"Operating System :: MacOS :: MacOS X",
"Topic :: Scientific/Engineering"
],
long_description=("Performant Pythonic GenomicRanges."))
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