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-rw-r--r--silx/gui/test/__init__.py11
-rw-r--r--silx/gui/test/test_colors.py401
-rw-r--r--silx/gui/test/test_utils.py166
3 files changed, 408 insertions, 170 deletions
diff --git a/silx/gui/test/__init__.py b/silx/gui/test/__init__.py
index 0d0805f..8a9a949 100644
--- a/silx/gui/test/__init__.py
+++ b/silx/gui/test/__init__.py
@@ -1,7 +1,7 @@
# coding: utf-8
# /*##########################################################################
#
-# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
+# Copyright (c) 2016-2018 European Synchrotron Radiation Facility
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
@@ -24,15 +24,15 @@
# ###########################################################################*/
__authors__ = ["T. Vincent", "P. Knobel"]
__license__ = "MIT"
-__date__ = "28/11/2017"
+__date__ = "24/04/2018"
import logging
import os
import sys
import unittest
-from silx.test.utils import test_options
+from silx.test.utils import test_options
_logger = logging.getLogger(__name__)
@@ -73,12 +73,14 @@ def suite():
from ..widgets import test as test_widgets
from ..data import test as test_data
from ..dialog import test as test_dialog
+ from ..utils import test as test_utils
+
from . import test_qt
# Console tests disabled due to corruption of python environment
# (see issue #538 on github)
# from . import test_console
from . import test_icons
- from . import test_utils
+ from . import test_colors
try:
from ..plot3d.test import suite as test_plot3d_suite
@@ -102,6 +104,7 @@ def suite():
test_suite.addTest(test_widgets.suite())
# test_suite.addTest(test_console.suite()) # see issue #538 on github
test_suite.addTest(test_icons.suite())
+ test_suite.addTest(test_colors.suite())
test_suite.addTest(test_data.suite())
test_suite.addTest(test_utils.suite())
test_suite.addTest(test_plot3d_suite())
diff --git a/silx/gui/test/test_colors.py b/silx/gui/test/test_colors.py
new file mode 100644
index 0000000..d7c205e
--- /dev/null
+++ b/silx/gui/test/test_colors.py
@@ -0,0 +1,401 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2015-2018 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+"""This module provides the Colormap object
+"""
+
+from __future__ import absolute_import
+
+__authors__ = ["H.Payno"]
+__license__ = "MIT"
+__date__ = "24/04/2018"
+
+import unittest
+import numpy
+from silx.utils.testutils import ParametricTestCase
+from silx.gui import colors
+from silx.gui.colors import Colormap
+from silx.gui.colors import preferredColormaps, setPreferredColormaps
+from silx.utils.exceptions import NotEditableError
+
+
+class TestRGBA(ParametricTestCase):
+ """Basic tests of rgba function"""
+
+ def testRGBA(self):
+ """"Test rgba function with accepted values"""
+ tests = { # name: (colors, expected values)
+ 'blue': ('blue', (0., 0., 1., 1.)),
+ '#010203': ('#010203', (1. / 255., 2. / 255., 3. / 255., 1.)),
+ '#01020304': ('#01020304', (1. / 255., 2. / 255., 3. / 255., 4. / 255.)),
+ '3 x uint8': (numpy.array((1, 255, 0), dtype=numpy.uint8),
+ (1 / 255., 1., 0., 1.)),
+ '4 x uint8': (numpy.array((1, 255, 0, 1), dtype=numpy.uint8),
+ (1 / 255., 1., 0., 1 / 255.)),
+ '3 x float overflow': ((3., 0.5, 1.), (1., 0.5, 1., 1.)),
+ }
+
+ for name, test in tests.items():
+ color, expected = test
+ with self.subTest(msg=name):
+ result = colors.rgba(color)
+ self.assertEqual(result, expected)
+
+
+class TestApplyColormapToData(ParametricTestCase):
+ """Tests of applyColormapToData function"""
+
+ def testApplyColormapToData(self):
+ """Simple test of applyColormapToData function"""
+ colormap = Colormap(name='gray', normalization='linear',
+ vmin=0, vmax=255)
+
+ size = 10
+ expected = numpy.empty((size, 4), dtype='uint8')
+ expected[:, 0] = numpy.arange(size, dtype='uint8')
+ expected[:, 1] = expected[:, 0]
+ expected[:, 2] = expected[:, 0]
+ expected[:, 3] = 255
+
+ for dtype in ('uint8', 'int32', 'float32', 'float64'):
+ with self.subTest(dtype=dtype):
+ array = numpy.arange(size, dtype=dtype)
+ result = colormap.applyToData(data=array)
+ self.assertTrue(numpy.all(numpy.equal(result, expected)))
+
+
+class TestDictAPI(unittest.TestCase):
+ """Make sure the old dictionary API is working
+ """
+
+ def setUp(self):
+ self.vmin = -1.0
+ self.vmax = 12
+
+ def testGetItem(self):
+ """test the item getter API ([xxx])"""
+ colormap = Colormap(name='viridis',
+ normalization=Colormap.LINEAR,
+ vmin=self.vmin,
+ vmax=self.vmax)
+ self.assertTrue(colormap['name'] == 'viridis')
+ self.assertTrue(colormap['normalization'] == Colormap.LINEAR)
+ self.assertTrue(colormap['vmin'] == self.vmin)
+ self.assertTrue(colormap['vmax'] == self.vmax)
+ with self.assertRaises(KeyError):
+ colormap['toto']
+
+ def testGetDict(self):
+ """Test the getDict function API"""
+ clmObject = Colormap(name='viridis',
+ normalization=Colormap.LINEAR,
+ vmin=self.vmin,
+ vmax=self.vmax)
+ clmDict = clmObject._toDict()
+ self.assertTrue(clmDict['name'] == 'viridis')
+ self.assertTrue(clmDict['autoscale'] is False)
+ self.assertTrue(clmDict['vmin'] == self.vmin)
+ self.assertTrue(clmDict['vmax'] == self.vmax)
+ self.assertTrue(clmDict['normalization'] == Colormap.LINEAR)
+
+ clmObject.setVRange(None, None)
+ self.assertTrue(clmObject._toDict()['autoscale'] is True)
+
+ def testSetValidDict(self):
+ """Test that if a colormap is created from a dict then it is correctly
+ created and the values are copied (so if some values from the dict
+ is changing, this won't affect the Colormap object"""
+ clm_dict = {
+ 'name': 'temperature',
+ 'vmin': 1.0,
+ 'vmax': 2.0,
+ 'normalization': 'linear',
+ 'colors': None,
+ 'autoscale': False
+ }
+
+ # Test that the colormap is correctly created
+ colormapObject = Colormap._fromDict(clm_dict)
+ self.assertTrue(colormapObject.getName() == clm_dict['name'])
+ self.assertTrue(colormapObject.getColormapLUT() == clm_dict['colors'])
+ self.assertTrue(colormapObject.getVMin() == clm_dict['vmin'])
+ self.assertTrue(colormapObject.getVMax() == clm_dict['vmax'])
+ self.assertTrue(colormapObject.isAutoscale() == clm_dict['autoscale'])
+
+ # Check that the colormap has copied the values
+ clm_dict['vmin'] = None
+ clm_dict['vmax'] = None
+ clm_dict['colors'] = [1.0, 2.0]
+ clm_dict['autoscale'] = True
+ clm_dict['normalization'] = Colormap.LOGARITHM
+ clm_dict['name'] = 'viridis'
+
+ self.assertFalse(colormapObject.getName() == clm_dict['name'])
+ self.assertFalse(colormapObject.getColormapLUT() == clm_dict['colors'])
+ self.assertFalse(colormapObject.getVMin() == clm_dict['vmin'])
+ self.assertFalse(colormapObject.getVMax() == clm_dict['vmax'])
+ self.assertFalse(colormapObject.isAutoscale() == clm_dict['autoscale'])
+
+ def testMissingKeysFromDict(self):
+ """Make sure we can create a Colormap object from a dictionnary even if
+ there is missing keys excepts if those keys are 'colors' or 'name'
+ """
+ colormap = Colormap._fromDict({'name': 'toto'})
+ self.assertTrue(colormap.getVMin() is None)
+ colormap = Colormap._fromDict({'colors': numpy.zeros(10)})
+ self.assertTrue(colormap.getName() is None)
+
+ with self.assertRaises(ValueError):
+ Colormap._fromDict({})
+
+ def testUnknowNorm(self):
+ """Make sure an error is raised if the given normalization is not
+ knowed
+ """
+ clm_dict = {
+ 'name': 'temperature',
+ 'vmin': 1.0,
+ 'vmax': 2.0,
+ 'normalization': 'toto',
+ 'colors': None,
+ 'autoscale': False
+ }
+ with self.assertRaises(ValueError):
+ Colormap._fromDict(clm_dict)
+
+
+class TestObjectAPI(ParametricTestCase):
+ """Test the new Object API of the colormap"""
+ def testVMinVMax(self):
+ """Test getter and setter associated to vmin and vmax values"""
+ vmin = 1.0
+ vmax = 2.0
+
+ colormapObject = Colormap(name='viridis',
+ vmin=vmin,
+ vmax=vmax,
+ normalization=Colormap.LINEAR)
+
+ with self.assertRaises(ValueError):
+ colormapObject.setVMin(3)
+
+ with self.assertRaises(ValueError):
+ colormapObject.setVMax(-2)
+
+ with self.assertRaises(ValueError):
+ colormapObject.setVRange(3, -2)
+
+ self.assertTrue(colormapObject.getColormapRange() == (1.0, 2.0))
+ self.assertTrue(colormapObject.isAutoscale() is False)
+ colormapObject.setVRange(None, None)
+ self.assertTrue(colormapObject.getVMin() is None)
+ self.assertTrue(colormapObject.getVMax() is None)
+ self.assertTrue(colormapObject.isAutoscale() is True)
+
+ def testCopy(self):
+ """Make sure the copy function is correctly processing
+ """
+ colormapObject = Colormap(name='toto',
+ colors=numpy.array([12, 13, 14]),
+ vmin=None,
+ vmax=None,
+ normalization=Colormap.LOGARITHM)
+
+ colormapObject2 = colormapObject.copy()
+ self.assertTrue(colormapObject == colormapObject2)
+ colormapObject.setColormapLUT(numpy.array([0, 1]))
+ self.assertFalse(colormapObject == colormapObject2)
+
+ colormapObject2 = colormapObject.copy()
+ self.assertTrue(colormapObject == colormapObject2)
+ colormapObject.setNormalization(Colormap.LINEAR)
+ self.assertFalse(colormapObject == colormapObject2)
+
+ def testGetColorMapRange(self):
+ """Make sure the getColormapRange function of colormap is correctly
+ applying
+ """
+ # test linear scale
+ data = numpy.array([-1, 1, 2, 3, float('nan')])
+ cl1 = Colormap(name='gray',
+ normalization=Colormap.LINEAR,
+ vmin=0,
+ vmax=2)
+ cl2 = Colormap(name='gray',
+ normalization=Colormap.LINEAR,
+ vmin=None,
+ vmax=2)
+ cl3 = Colormap(name='gray',
+ normalization=Colormap.LINEAR,
+ vmin=0,
+ vmax=None)
+ cl4 = Colormap(name='gray',
+ normalization=Colormap.LINEAR,
+ vmin=None,
+ vmax=None)
+
+ self.assertTrue(cl1.getColormapRange(data) == (0, 2))
+ self.assertTrue(cl2.getColormapRange(data) == (-1, 2))
+ self.assertTrue(cl3.getColormapRange(data) == (0, 3))
+ self.assertTrue(cl4.getColormapRange(data) == (-1, 3))
+
+ # test linear with annoying cases
+ self.assertEqual(cl3.getColormapRange((-1, -2)), (0, 0))
+ self.assertEqual(cl4.getColormapRange(()), (0., 1.))
+ self.assertEqual(cl4.getColormapRange(
+ (float('nan'), float('inf'), 1., -float('inf'), 2)), (1., 2.))
+ self.assertEqual(cl4.getColormapRange(
+ (float('nan'), float('inf'))), (0., 1.))
+
+ # test log scale
+ data = numpy.array([float('nan'), -1, 1, 10, 100, 1000])
+ cl1 = Colormap(name='gray',
+ normalization=Colormap.LOGARITHM,
+ vmin=1,
+ vmax=100)
+ cl2 = Colormap(name='gray',
+ normalization=Colormap.LOGARITHM,
+ vmin=None,
+ vmax=100)
+ cl3 = Colormap(name='gray',
+ normalization=Colormap.LOGARITHM,
+ vmin=1,
+ vmax=None)
+ cl4 = Colormap(name='gray',
+ normalization=Colormap.LOGARITHM,
+ vmin=None,
+ vmax=None)
+
+ self.assertTrue(cl1.getColormapRange(data) == (1, 100))
+ self.assertTrue(cl2.getColormapRange(data) == (1, 100))
+ self.assertTrue(cl3.getColormapRange(data) == (1, 1000))
+ self.assertTrue(cl4.getColormapRange(data) == (1, 1000))
+
+ # test log with annoying cases
+ self.assertEqual(cl3.getColormapRange((0.1, 0.2)), (1, 1))
+ self.assertEqual(cl4.getColormapRange((-2., -1.)), (1., 1.))
+ self.assertEqual(cl4.getColormapRange(()), (1., 10.))
+ self.assertEqual(cl4.getColormapRange(
+ (float('nan'), float('inf'), 1., -float('inf'), 2)), (1., 2.))
+ self.assertEqual(cl4.getColormapRange(
+ (float('nan'), float('inf'))), (1., 10.))
+
+ def testApplyToData(self):
+ """Test applyToData on different datasets"""
+ datasets = [
+ numpy.zeros((0, 0)), # Empty array
+ numpy.array((numpy.nan, numpy.inf)), # All non-finite
+ numpy.array((-numpy.inf, numpy.inf, 1.0, 2.0)), # Some infinite
+ ]
+
+ for normalization in ('linear', 'log'):
+ colormap = Colormap(name='gray',
+ normalization=normalization,
+ vmin=None,
+ vmax=None)
+
+ for data in datasets:
+ with self.subTest(data=data):
+ image = colormap.applyToData(data)
+ self.assertEqual(image.dtype, numpy.uint8)
+ self.assertEqual(image.shape[-1], 4)
+ self.assertEqual(image.shape[:-1], data.shape)
+
+ def testGetNColors(self):
+ """Test getNColors method"""
+ # specific LUT
+ colormap = Colormap(name=None,
+ colors=((0., 0., 0.), (1., 1., 1.)),
+ vmin=1000,
+ vmax=2000)
+ colors = colormap.getNColors()
+ self.assertTrue(numpy.all(numpy.equal(
+ colors,
+ ((0, 0, 0, 255), (255, 255, 255, 255)))))
+
+ def testEditableMode(self):
+ """Make sure the colormap will raise NotEditableError when try to
+ change a colormap not editable"""
+ colormap = Colormap()
+ colormap.setEditable(False)
+ with self.assertRaises(NotEditableError):
+ colormap.setVRange(0., 1.)
+ with self.assertRaises(NotEditableError):
+ colormap.setVMin(1.)
+ with self.assertRaises(NotEditableError):
+ colormap.setVMax(1.)
+ with self.assertRaises(NotEditableError):
+ colormap.setNormalization(Colormap.LOGARITHM)
+ with self.assertRaises(NotEditableError):
+ colormap.setName('magma')
+ with self.assertRaises(NotEditableError):
+ colormap.setColormapLUT(numpy.array([0, 1]))
+ with self.assertRaises(NotEditableError):
+ colormap._setFromDict(colormap._toDict())
+ state = colormap.saveState()
+ with self.assertRaises(NotEditableError):
+ colormap.restoreState(state)
+
+
+class TestPreferredColormaps(unittest.TestCase):
+ """Test get|setPreferredColormaps functions"""
+
+ def setUp(self):
+ # Save preferred colormaps
+ self._colormaps = preferredColormaps()
+
+ def tearDown(self):
+ # Restore saved preferred colormaps
+ setPreferredColormaps(self._colormaps)
+
+ def test(self):
+ colormaps = 'viridis', 'magma'
+
+ setPreferredColormaps(colormaps)
+ self.assertEqual(preferredColormaps(), colormaps)
+
+ with self.assertRaises(ValueError):
+ setPreferredColormaps(())
+
+ with self.assertRaises(ValueError):
+ setPreferredColormaps(('This is not a colormap',))
+
+ colormaps = 'red', 'green'
+ setPreferredColormaps(('This is not a colormap',) + colormaps)
+ self.assertEqual(preferredColormaps(), colormaps)
+
+
+def suite():
+ test_suite = unittest.TestSuite()
+ loadTests = unittest.defaultTestLoader.loadTestsFromTestCase
+ test_suite.addTest(loadTests(TestApplyColormapToData))
+ test_suite.addTest(loadTests(TestRGBA))
+ test_suite.addTest(loadTests(TestDictAPI))
+ test_suite.addTest(loadTests(TestObjectAPI))
+ test_suite.addTest(loadTests(TestPreferredColormaps))
+ return test_suite
+
+
+if __name__ == '__main__':
+ unittest.main(defaultTest='suite')
diff --git a/silx/gui/test/test_utils.py b/silx/gui/test/test_utils.py
deleted file mode 100644
index b1cdf0f..0000000
--- a/silx/gui/test/test_utils.py
+++ /dev/null
@@ -1,166 +0,0 @@
-# coding: utf-8
-# /*##########################################################################
-#
-# Copyright (c) 2017-2018 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-# ###########################################################################*/
-"""Test of utils module."""
-
-__authors__ = ["T. Vincent"]
-__license__ = "MIT"
-__date__ = "16/01/2017"
-
-
-import threading
-import unittest
-
-import numpy
-
-from silx.third_party.concurrent_futures import wait
-from silx.gui import qt
-from silx.gui.test.utils import TestCaseQt
-
-from silx.gui import _utils
-
-
-class TestQImageConversion(TestCaseQt):
- """Tests conversion of QImage to/from numpy array."""
-
- def testConvertArrayToQImage(self):
- """Test conversion of numpy array to QImage"""
- image = numpy.ones((3, 3, 3), dtype=numpy.uint8)
- qimage = _utils.convertArrayToQImage(image)
-
- self.assertEqual(qimage.height(), image.shape[0])
- self.assertEqual(qimage.width(), image.shape[1])
- self.assertEqual(qimage.format(), qt.QImage.Format_RGB888)
-
- color = qt.QColor(1, 1, 1).rgb()
- self.assertEqual(qimage.pixel(1, 1), color)
-
- def testConvertQImageToArray(self):
- """Test conversion of QImage to numpy array"""
- qimage = qt.QImage(3, 3, qt.QImage.Format_RGB888)
- qimage.fill(0x010101)
- image = _utils.convertQImageToArray(qimage)
-
- self.assertEqual(qimage.height(), image.shape[0])
- self.assertEqual(qimage.width(), image.shape[1])
- self.assertEqual(image.shape[2], 3)
- self.assertTrue(numpy.all(numpy.equal(image, 1)))
-
-
-class TestSubmitToQtThread(TestCaseQt):
- """Test submission of tasks to Qt main thread"""
-
- def setUp(self):
- # Reset executor to test lazy-loading in different conditions
- _utils._executor = None
- super(TestSubmitToQtThread, self).setUp()
-
- def _task(self, value1, value2):
- return value1, value2
-
- def _taskWithException(self, *args, **kwargs):
- raise RuntimeError('task exception')
-
- def testFromMainThread(self):
- """Call submitToQtMainThread from the main thread"""
- value1, value2 = 0, 1
- future = _utils.submitToQtMainThread(self._task, value1, value2=value2)
- self.assertTrue(future.done())
- self.assertEqual(future.result(1), (value1, value2))
- self.assertIsNone(future.exception(1))
-
- future = _utils.submitToQtMainThread(self._taskWithException)
- self.assertTrue(future.done())
- with self.assertRaises(RuntimeError):
- future.result(1)
- self.assertIsInstance(future.exception(1), RuntimeError)
-
- def _threadedTest(self):
- """Function run in a thread for the tests"""
- value1, value2 = 0, 1
- future = _utils.submitToQtMainThread(self._task, value1, value2=value2)
-
- wait([future], 3)
-
- self.assertTrue(future.done())
- self.assertEqual(future.result(1), (value1, value2))
- self.assertIsNone(future.exception(1))
-
- future = _utils.submitToQtMainThread(self._taskWithException)
-
- wait([future], 3)
-
- self.assertTrue(future.done())
- with self.assertRaises(RuntimeError):
- future.result(1)
- self.assertIsInstance(future.exception(1), RuntimeError)
-
- def testFromPythonThread(self):
- """Call submitToQtMainThread from a Python thread"""
- thread = threading.Thread(target=self._threadedTest)
- thread.start()
- for i in range(100): # Loop over for 10 seconds
- self.qapp.processEvents()
- thread.join(0.1)
- if not thread.is_alive():
- break
- else:
- self.fail(('Thread task still running'))
-
- def testFromQtThread(self):
- """Call submitToQtMainThread from a Qt thread pool"""
- class Runner(qt.QRunnable):
- def __init__(self, fn):
- super(Runner, self).__init__()
- self._fn = fn
-
- def run(self):
- self._fn()
-
- def autoDelete(self):
- return True
-
- threadPool = qt.silxGlobalThreadPool()
- runner = Runner(self._threadedTest)
- threadPool.start(runner)
- for i in range(100): # Loop over for 10 seconds
- self.qapp.processEvents()
- done = threadPool.waitForDone(100)
- if done:
- break
- else:
- self.fail('Thread pool task still running')
-
-
-def suite():
- test_suite = unittest.TestSuite()
- test_suite.addTest(unittest.defaultTestLoader.loadTestsFromTestCase(
- TestQImageConversion))
- test_suite.addTest(unittest.defaultTestLoader.loadTestsFromTestCase(
- TestSubmitToQtThread))
- return test_suite
-
-
-if __name__ == '__main__':
- unittest.main(defaultTest='suite')