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+# coding: utf-8
+# /*##########################################################################
+# Copyright (C) 2016-2017 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ############################################################################*/
+"""Tests for dicttoh5 module"""
+
+__authors__ = ["P. Knobel"]
+__license__ = "MIT"
+__date__ = "10/02/2017"
+
+from collections import OrderedDict
+import numpy
+import os
+import tempfile
+import unittest
+
+try:
+ import h5py
+ h5py_missing = False
+except ImportError:
+ h5py_missing = True
+
+from collections import defaultdict
+
+from ..configdict import ConfigDict
+from ..dictdump import dicttoh5, dicttojson, dicttoini, dump
+from ..dictdump import h5todict, load
+
+
+def tree():
+ """Tree data structure as a recursive nested dictionary"""
+ return defaultdict(tree)
+
+
+city_attrs = tree()
+city_attrs["Europe"]["France"]["Grenoble"]["area"] = "18.44 km2"
+city_attrs["Europe"]["France"]["Grenoble"]["inhabitants"] = 160215
+city_attrs["Europe"]["France"]["Grenoble"]["coordinates"] = [45.1830, 5.7196]
+city_attrs["Europe"]["France"]["Tourcoing"]["area"]
+
+
+@unittest.skipIf(h5py_missing, "Could not import h5py")
+class TestDictToH5(unittest.TestCase):
+ def setUp(self):
+ self.tempdir = tempfile.mkdtemp()
+ self.h5_fname = os.path.join(self.tempdir, "cityattrs.h5")
+
+ def tearDown(self):
+ os.unlink(self.h5_fname)
+ os.rmdir(self.tempdir)
+
+ def testH5CityAttrs(self):
+ filters = {'shuffle': True,
+ 'fletcher32': True}
+ dicttoh5(city_attrs, self.h5_fname, h5path='/city attributes',
+ mode="w", create_dataset_args=filters)
+
+ h5f = h5py.File(self.h5_fname)
+
+ self.assertIn("Tourcoing/area", h5f["/city attributes/Europe/France"])
+ ds = h5f["/city attributes/Europe/France/Grenoble/inhabitants"]
+ self.assertEqual(ds[...], 160215)
+
+ # filters only apply to datasets that are not scalars (shape != () )
+ ds = h5f["/city attributes/Europe/France/Grenoble/coordinates"]
+ #self.assertEqual(ds.compression, "gzip")
+ self.assertTrue(ds.fletcher32)
+ self.assertTrue(ds.shuffle)
+
+ h5f.close()
+
+ ddict = load(self.h5_fname, fmat="hdf5")
+ self.assertAlmostEqual(
+ min(ddict["city attributes"]["Europe"]["France"]["Grenoble"]["coordinates"]),
+ 5.7196)
+
+
+@unittest.skipIf(h5py_missing, "Could not import h5py")
+class TestH5ToDict(unittest.TestCase):
+ def setUp(self):
+ self.tempdir = tempfile.mkdtemp()
+ self.h5_fname = os.path.join(self.tempdir, "cityattrs.h5")
+ dicttoh5(city_attrs, self.h5_fname)
+
+ def tearDown(self):
+ os.unlink(self.h5_fname)
+ os.rmdir(self.tempdir)
+
+ def testExcludeNames(self):
+ ddict = h5todict(self.h5_fname, path="/Europe/France",
+ exclude_names=["ourcoing", "inhab", "toto"])
+ self.assertNotIn("Tourcoing", ddict)
+ self.assertIn("Grenoble", ddict)
+
+ self.assertNotIn("inhabitants", ddict["Grenoble"])
+ self.assertIn("coordinates", ddict["Grenoble"])
+ self.assertIn("area", ddict["Grenoble"])
+
+
+class TestDictToJson(unittest.TestCase):
+ def setUp(self):
+ self.dir_path = tempfile.mkdtemp()
+ self.json_fname = os.path.join(self.dir_path, "cityattrs.json")
+
+ def tearDown(self):
+ os.unlink(self.json_fname)
+ os.rmdir(self.dir_path)
+
+ def testJsonCityAttrs(self):
+ self.json_fname = os.path.join(self.dir_path, "cityattrs.json")
+ dicttojson(city_attrs, self.json_fname, indent=3)
+
+ with open(self.json_fname, "r") as f:
+ json_content = f.read()
+ self.assertIn('"inhabitants": 160215', json_content)
+
+
+class TestDictToIni(unittest.TestCase):
+ def setUp(self):
+ self.dir_path = tempfile.mkdtemp()
+ self.ini_fname = os.path.join(self.dir_path, "test.ini")
+
+ def tearDown(self):
+ os.unlink(self.ini_fname)
+ os.rmdir(self.dir_path)
+
+ def testConfigDictIO(self):
+ """Ensure values and types of data is preserved when dictionary is
+ written to file and read back."""
+ testdict = {
+ 'simple_types': {
+ 'float': 1.0,
+ 'int': 1,
+ 'percent string': '5 % is too much',
+ 'backslash string': 'i can use \\',
+ 'empty_string': '',
+ 'nonestring': 'None',
+ 'nonetype': None,
+ 'interpstring': 'interpolation: %(percent string)s',
+ },
+ 'containers': {
+ 'list': [-1, 'string', 3.0, False, None],
+ 'array': numpy.array([1.0, 2.0, 3.0]),
+ 'dict': {
+ 'key1': 'Hello World',
+ 'key2': 2.0,
+ }
+ }
+ }
+
+ dump(testdict, self.ini_fname)
+
+ #read the data back
+ readdict = load(self.ini_fname)
+
+ testdictkeys = list(testdict.keys())
+ readkeys = list(readdict.keys())
+
+ self.assertTrue(len(readkeys) == len(testdictkeys),
+ "Number of read keys not equal")
+
+ self.assertEqual(readdict['simple_types']["interpstring"],
+ "interpolation: 5 % is too much")
+
+ testdict['simple_types']["interpstring"] = "interpolation: 5 % is too much"
+
+ for key in testdict["simple_types"]:
+ original = testdict['simple_types'][key]
+ read = readdict['simple_types'][key]
+ self.assertEqual(read, original,
+ "Read <%s> instead of <%s>" % (read, original))
+
+ for key in testdict["containers"]:
+ original = testdict["containers"][key]
+ read = readdict["containers"][key]
+ if key == 'array':
+ self.assertEqual(read.all(), original.all(),
+ "Read <%s> instead of <%s>" % (read, original))
+ else:
+ self.assertEqual(read, original,
+ "Read <%s> instead of <%s>" % (read, original))
+
+ def testConfigDictOrder(self):
+ """Ensure order is preserved when dictionary is
+ written to file and read back."""
+ test_dict = {'banana': 3, 'apple': 4, 'pear': 1, 'orange': 2}
+ # sort by key
+ test_ordered_dict1 = OrderedDict(sorted(test_dict.items(),
+ key=lambda t: t[0]))
+ # sort by value
+ test_ordered_dict2 = OrderedDict(sorted(test_dict.items(),
+ key=lambda t: t[1]))
+ # add the two ordered dict as sections of a third ordered dict
+ test_ordered_dict3 = OrderedDict()
+ test_ordered_dict3["section1"] = test_ordered_dict1
+ test_ordered_dict3["section2"] = test_ordered_dict2
+
+ # write to ini and read back as a ConfigDict (inherits OrderedDict)
+ dump(test_ordered_dict3,
+ self.ini_fname, fmat="ini")
+ read_instance = ConfigDict()
+ read_instance.read(self.ini_fname)
+
+ # loop through original and read-back dictionaries,
+ # test identical order for key/value pairs
+ for orig_key, section in zip(test_ordered_dict3.keys(),
+ read_instance.keys()):
+ self.assertEqual(orig_key, section)
+ for orig_key2, read_key in zip(test_ordered_dict3[section].keys(),
+ read_instance[section].keys()):
+ self.assertEqual(orig_key2, read_key)
+ self.assertEqual(test_ordered_dict3[section][orig_key2],
+ read_instance[section][read_key])
+
+
+def suite():
+ test_suite = unittest.TestSuite()
+ test_suite.addTest(
+ unittest.defaultTestLoader.loadTestsFromTestCase(TestDictToIni))
+ test_suite.addTest(
+ unittest.defaultTestLoader.loadTestsFromTestCase(TestDictToH5))
+ test_suite.addTest(
+ unittest.defaultTestLoader.loadTestsFromTestCase(TestDictToJson))
+ test_suite.addTest(
+ unittest.defaultTestLoader.loadTestsFromTestCase(TestH5ToDict))
+ return test_suite
+
+
+if __name__ == '__main__':
+ unittest.main(defaultTest="suite")