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+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+# Project: Median filter of images + OpenCL
+# https://github.com/silx-kit/silx
+#
+# Permission is hereby granted, free of charge, to any person
+# obtaining a copy of this software and associated documentation
+# files (the "Software"), to deal in the Software without
+# restriction, including without limitation the rights to use,
+# copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the
+# Software is furnished to do so, subject to the following
+# conditions:
+#
+# The above copyright notice and this permission notice shall be
+# included in all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
+# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
+# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
+# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+# OTHER DEALINGS IN THE SOFTWARE.
+
+"""
+Simple test of the median filter
+"""
+
+from __future__ import division, print_function
+
+__authors__ = ["Jérôme Kieffer"]
+__contact__ = "jerome.kieffer@esrf.eu"
+__license__ = "MIT"
+__copyright__ = "2013-2017 European Synchrotron Radiation Facility, Grenoble, France"
+__date__ = "05/07/2018"
+
+
+import sys
+import time
+import logging
+import numpy
+import unittest
+from collections import namedtuple
+try:
+ import mako
+except ImportError:
+ mako = None
+from ..common import ocl
+if ocl:
+ import pyopencl
+ import pyopencl.array
+ from .. import medfilt
+
+logger = logging.getLogger(__name__)
+
+Result = namedtuple("Result", ["size", "error", "sp_time", "oc_time"])
+
+try:
+ from scipy.misc import ascent
+except:
+ def ascent():
+ """Dummy image from random data"""
+ return numpy.random.random((512, 512))
+try:
+ from scipy.ndimage import filters
+ median_filter = filters.median_filter
+ HAS_SCIPY = True
+except:
+ HAS_SCIPY = False
+ from silx.math import medfilt2d as median_filter
+
+@unittest.skipUnless(ocl and mako, "PyOpenCl is missing")
+class TestMedianFilter(unittest.TestCase):
+
+ def setUp(self):
+ if ocl is None:
+ return
+ self.data = ascent().astype(numpy.float32)
+ self.medianfilter = medfilt.MedianFilter2D(self.data.shape, devicetype="gpu")
+
+ def tearDown(self):
+ self.data = None
+ self.medianfilter = None
+
+ def measure(self, size):
+ "Common measurement of accuracy and timings"
+ t0 = time.time()
+ if HAS_SCIPY:
+ ref = median_filter(self.data, size, mode="nearest")
+ else:
+ ref = median_filter(self.data, size)
+ t1 = time.time()
+ try:
+ got = self.medianfilter.medfilt2d(self.data, size)
+ except RuntimeError as msg:
+ logger.error(msg)
+ return
+ t2 = time.time()
+ delta = abs(got - ref).max()
+ return Result(size, delta, t1 - t0, t2 - t1)
+
+ @unittest.skipUnless(ocl and mako, "pyopencl is missing")
+ def test_medfilt(self):
+ """
+ tests the median filter kernel
+ """
+ r = self.measure(size=11)
+ if r is None:
+ logger.info("test_medfilt: size: %s: skipped")
+ else:
+ logger.info("test_medfilt: size: %s error %s, t_ref: %.3fs, t_ocl: %.3fs" % r)
+ self.assertEqual(r.error, 0, 'Results are correct')
+
+ def benchmark(self, limit=36):
+ "Run some benchmarking"
+ try:
+ import PyQt5
+ from ...gui.matplotlib import pylab
+ from ...gui.utils import update_fig
+ except:
+ pylab = None
+
+ def update_fig(*ag, **kwarg):
+ pass
+
+ fig = pylab.figure()
+ fig.suptitle("Median filter of an image 512x512")
+ sp = fig.add_subplot(1, 1, 1)
+ sp.set_title(self.medianfilter.ctx.devices[0].name)
+ sp.set_xlabel("Window width & height")
+ sp.set_ylabel("Execution time (s)")
+ sp.set_xlim(2, limit + 1)
+ sp.set_ylim(0, 4)
+ data_size = []
+ data_scipy = []
+ data_opencl = []
+ plot_sp = sp.plot(data_size, data_scipy, "-or", label="scipy")[0]
+ plot_opencl = sp.plot(data_size, data_opencl, "-ob", label="opencl")[0]
+ sp.legend(loc=2)
+ fig.show()
+ update_fig(fig)
+ for s in range(3, limit, 2):
+ r = self.measure(s)
+ print(r)
+ if r.error == 0:
+ data_size.append(s)
+ data_scipy.append(r.sp_time)
+ data_opencl.append(r.oc_time)
+ plot_sp.set_data(data_size, data_scipy)
+ plot_opencl.set_data(data_size, data_opencl)
+ update_fig(fig)
+ fig.show()
+ input()
+
+
+def benchmark():
+ testSuite = unittest.TestSuite()
+ testSuite.addTest(TestMedianFilter("benchmark"))
+ return testSuite