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# -*- coding: utf-8 -*-
#
# Project: silx
# https://github.com/silx-kit/silx
#
# Copyright (C) 2012-2016 European Synchrotron Radiation Facility, Grenoble, France
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
__authors__ = ["V. Valls"]
__license__ = "MIT"
__date__ = "18/04/2018"
import unittest
import numpy
from .._mergeimpl import MarchingSquaresMergeImpl
class TestMergeImplApi(unittest.TestCase):
def test_image_not_an_array(self):
bad_image = 1
self.assertRaises(ValueError, MarchingSquaresMergeImpl, bad_image)
def test_image_bad_dim(self):
bad_image = numpy.array([[[1.0]]])
self.assertRaises(ValueError, MarchingSquaresMergeImpl, bad_image)
def test_image_not_big_enough(self):
bad_image = numpy.array([[1.0, 1.0, 1.0, 1.0]])
self.assertRaises(ValueError, MarchingSquaresMergeImpl, bad_image)
def test_mask_not_an_array(self):
image = numpy.array([[1.0, 1.0], [1.0, 1.0]])
bad_mask = 1
self.assertRaises(ValueError, MarchingSquaresMergeImpl, image, bad_mask)
def test_mask_not_match(self):
image = numpy.array([[1.0, 1.0], [1.0, 1.0]])
bad_mask = numpy.array([[1.0, 1.0]])
self.assertRaises(ValueError, MarchingSquaresMergeImpl, image, bad_mask)
def test_ok_anyway_bad_type(self):
image = numpy.array([[1.0, 1.0], [1.0, 1.0]], dtype=numpy.int32)
mask = numpy.array([[1.0, 1.0], [1.0, 1.0]], dtype=numpy.float32)
MarchingSquaresMergeImpl(image, mask)
def test_find_contours_result(self):
image = numpy.zeros((2, 2))
image[0, 0] = 1
ms = MarchingSquaresMergeImpl(image)
polygons = ms.find_contours(0.5)
self.assertIsInstance(polygons, list)
self.assertTrue(len(polygons), 1)
self.assertIsInstance(polygons[0], numpy.ndarray)
self.assertEqual(polygons[0].shape[1], 2)
self.assertEqual(polygons[0].dtype.kind, "f")
def test_find_pixels_result(self):
image = numpy.zeros((2, 2))
image[0, 0] = 1
ms = MarchingSquaresMergeImpl(image)
pixels = ms.find_pixels(0.5)
self.assertIsInstance(pixels, numpy.ndarray)
self.assertEqual(pixels.shape[1], 2)
self.assertEqual(pixels.dtype.kind, "i")
def test_find_contours_empty_result(self):
image = numpy.zeros((2, 2))
ms = MarchingSquaresMergeImpl(image)
polygons = ms.find_contours(0.5)
self.assertIsInstance(polygons, list)
self.assertEqual(len(polygons), 0)
def test_find_pixels_empty_result(self):
image = numpy.zeros((2, 2))
ms = MarchingSquaresMergeImpl(image)
pixels = ms.find_pixels(0.5)
self.assertIsInstance(pixels, numpy.ndarray)
self.assertEqual(pixels.shape[1], 2)
self.assertEqual(pixels.shape[0], 0)
self.assertEqual(pixels.dtype.kind, "i")
def test_find_contours_yx_result(self):
image = numpy.zeros((2, 2))
image[1, 0] = 1
ms = MarchingSquaresMergeImpl(image)
polygons = ms.find_contours(0.5)
polygon = polygons[0]
self.assertTrue((polygon == (0.5, 0)).any())
self.assertTrue((polygon == (1, 0.5)).any())
def test_find_pixels_yx_result(self):
image = numpy.zeros((2, 2))
image[1, 0] = 1
ms = MarchingSquaresMergeImpl(image)
pixels = ms.find_pixels(0.5)
self.assertTrue((pixels == (1, 0)).any())
class TestMergeImplContours(unittest.TestCase):
def test_merge_segments(self):
image = numpy.zeros((4, 4))
image[(2, 3), :] = 1
ms = MarchingSquaresMergeImpl(image)
polygons = ms.find_contours(0.5)
self.assertEqual(len(polygons), 1)
def test_merge_segments_2(self):
image = numpy.zeros((4, 4))
image[(2, 3), :] = 1
image[2, 2] = 0
ms = MarchingSquaresMergeImpl(image)
polygons = ms.find_contours(0.5)
self.assertEqual(len(polygons), 1)
def test_merge_tiles(self):
image = numpy.zeros((4, 4))
image[(2, 3), :] = 1
ms = MarchingSquaresMergeImpl(image, group_size=2)
polygons = ms.find_contours(0.5)
self.assertEqual(len(polygons), 1)
def test_fully_masked(self):
image = numpy.zeros((5, 5))
image[(2, 3), :] = 1
mask = numpy.ones((5, 5))
ms = MarchingSquaresMergeImpl(image, mask)
polygons = ms.find_contours(0.5)
self.assertEqual(len(polygons), 0)
def test_fully_masked_minmax(self):
"""This invalidates all the tiles. The route is not the same."""
image = numpy.zeros((5, 5))
image[(2, 3), :] = 1
mask = numpy.ones((5, 5))
ms = MarchingSquaresMergeImpl(image, mask, group_size=2, use_minmax_cache=True)
polygons = ms.find_contours(0.5)
self.assertEqual(len(polygons), 0)
def test_masked_segments(self):
image = numpy.zeros((5, 5))
image[(2, 3, 4), :] = 1
mask = numpy.zeros((5, 5))
mask[:, 2] = 1
ms = MarchingSquaresMergeImpl(image, mask)
polygons = ms.find_contours(0.5)
self.assertEqual(len(polygons), 2)
def test_closed_polygon(self):
image = numpy.zeros((5, 5))
image[2, 2] = 1
image[1, 2] = 1
image[3, 2] = 1
image[2, 1] = 1
image[2, 3] = 1
mask = None
ms = MarchingSquaresMergeImpl(image, mask)
polygons = ms.find_contours(0.9)
self.assertEqual(len(polygons), 1)
self.assertEqual(list(polygons[0][0]), list(polygons[0][-1]))
def test_closed_polygon_between_tiles(self):
image = numpy.zeros((5, 5))
image[2, 2] = 1
image[1, 2] = 1
image[3, 2] = 1
image[2, 1] = 1
image[2, 3] = 1
mask = None
ms = MarchingSquaresMergeImpl(image, mask, group_size=2)
polygons = ms.find_contours(0.9)
self.assertEqual(len(polygons), 1)
self.assertEqual(list(polygons[0][0]), list(polygons[0][-1]))
def test_open_polygon(self):
image = numpy.zeros((5, 5))
image[2, 2] = 1
image[1, 2] = 1
image[3, 2] = 1
image[2, 1] = 1
image[2, 3] = 1
mask = numpy.zeros((5, 5))
mask[1, 1] = 1
ms = MarchingSquaresMergeImpl(image, mask)
polygons = ms.find_contours(0.9)
self.assertEqual(len(polygons), 1)
self.assertNotEqual(list(polygons[0][0]), list(polygons[0][-1]))
def test_ambiguous_pattern(self):
image = numpy.zeros((6, 8))
image[(3, 4), :] = 1
image[:, (0, -1)] = 0
image[3, 3] = -0.001
image[4, 4] = 0.0
mask = None
ms = MarchingSquaresMergeImpl(image, mask)
polygons = ms.find_contours(0.5)
self.assertEqual(len(polygons), 2)
def test_ambiguous_pattern_2(self):
image = numpy.zeros((6, 8))
image[(3, 4), :] = 1
image[:, (0, -1)] = 0
image[3, 3] = +0.001
image[4, 4] = 0.0
mask = None
ms = MarchingSquaresMergeImpl(image, mask)
polygons = ms.find_contours(0.5)
self.assertEqual(len(polygons), 1)
def count_closed_polygons(self, polygons):
closed = 0
for polygon in polygons:
if list(polygon[0]) == list(polygon[-1]):
closed += 1
return closed
def test_image(self):
# example from skimage
x, y = numpy.ogrid[-numpy.pi:numpy.pi:100j, -numpy.pi:numpy.pi:100j]
image = numpy.sin(numpy.exp((numpy.sin(x)**3 + numpy.cos(y)**2)))
mask = None
ms = MarchingSquaresMergeImpl(image, mask)
polygons = ms.find_contours(0.5)
self.assertEqual(len(polygons), 11)
self.assertEqual(self.count_closed_polygons(polygons), 3)
def test_image_tiled(self):
# example from skimage
x, y = numpy.ogrid[-numpy.pi:numpy.pi:100j, -numpy.pi:numpy.pi:100j]
image = numpy.sin(numpy.exp((numpy.sin(x)**3 + numpy.cos(y)**2)))
mask = None
ms = MarchingSquaresMergeImpl(image, mask, group_size=50)
polygons = ms.find_contours(0.5)
self.assertEqual(len(polygons), 11)
self.assertEqual(self.count_closed_polygons(polygons), 3)
def test_image_tiled_minmax(self):
# example from skimage
x, y = numpy.ogrid[-numpy.pi:numpy.pi:100j, -numpy.pi:numpy.pi:100j]
image = numpy.sin(numpy.exp((numpy.sin(x)**3 + numpy.cos(y)**2)))
mask = None
ms = MarchingSquaresMergeImpl(image, mask, group_size=50, use_minmax_cache=True)
polygons = ms.find_contours(0.5)
self.assertEqual(len(polygons), 11)
self.assertEqual(self.count_closed_polygons(polygons), 3)
def suite():
test_suite = unittest.TestSuite()
loadTests = unittest.defaultTestLoader.loadTestsFromTestCase
test_suite.addTest(loadTests(TestMergeImplApi))
test_suite.addTest(loadTests(TestMergeImplContours))
return test_suite
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