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* Declare fast forward from 1.3.3+dfsg-2HEADarchive/debian/1.3.3+dfsg-3masterÉtienne Mollier2023-12-18
|\ | | | | | | [dgit --quilt=gbp --overwrite]
| * Use 2to3 to port to Python3Andreas Tille2021-09-09
| | | | | | | | | | | | | | Bug-Debian: https://bugs.debian.org/938415 Last-Update: Thu, 12 Sep 2019 11:26:11 +0200 Gbp-Pq: Name 2to3.patch
| * Use Debian packaged samtoolsAndreas Tille2021-09-09
| | | | | | | | | | | | Last-Update: Fri, 09 Dec 2016 14:26:08 +0100 Gbp-Pq: Name use_debian_packaged_samtools.patch
| * accept the hardening flagsMichael R. Crusoe2021-09-09
| | | | | | Gbp-Pq: Name hardening
| * rsem (1.3.3+dfsg-2) unstable; urgency=mediumAndreas Tille2021-09-09
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | [ Steffen Moeller ] * Fix watchfile to detect new versions on github (routine-update) [ Andreas Tille ] * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Use secure URI in Homepage field. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. [dgit import unpatched rsem 1.3.3+dfsg-2]
| | * Import rsem_1.3.3+dfsg-2.debian.tar.xzAndreas Tille2021-09-09
| | | | | | | | [dgit import tarball rsem 1.3.3+dfsg-2 rsem_1.3.3+dfsg-2.debian.tar.xz]
| * Import rsem_1.3.3+dfsg.orig.tar.xzMichael R. Crusoe2020-02-17
| | | | [dgit import orig rsem_1.3.3+dfsg.orig.tar.xz]
* port codebase to gnu++11.Debian Med Packaging Team2023-12-18
| | | | | | | | | | | | | | Since boost 1.83, it is necessary to build rsem with C++ 2011 standard. This patch bumps the -std=gnu++98 passed by upstream Makefil to -std=gnu++11. It should become unnecessary once upstream bumped to C++ 2011 or later, or when the package will not depend on boost anymore, in case this is in upstream's agenda; there is a merge request open upstream to bump to -std=gnu++17 in the meantime. Author: Étienne Mollier <emollier@debian.org> Bug: https://github.com/deweylab/RSEM/pull/96 Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1056010 Last-Update: 2023-12-18 Gbp-Pq: Name stdgnu++11.patch
* Use 2to3 to port to Python3Andreas Tille2023-12-18
| | | | | | | Bug-Debian: https://bugs.debian.org/938415 Last-Update: Thu, 12 Sep 2019 11:26:11 +0200 Gbp-Pq: Name 2to3.patch
* Use Debian packaged samtoolsAndreas Tille2023-12-18
| | | | | | Last-Update: Fri, 09 Dec 2016 14:26:08 +0100 Gbp-Pq: Name use_debian_packaged_samtools.patch
* accept the hardening flagsMichael R. Crusoe2023-12-18
| | | Gbp-Pq: Name hardening
* ready to upload to unstable.debian/1.3.3+dfsg-3Étienne Mollier2023-12-18
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* d/control: build depend on libncurses-dev.Étienne Mollier2023-12-18
| | | | This replaces the obsolete libncurses5-dev.
* d/control: declare compliance to standards version 4.6.2.Étienne Mollier2023-12-18
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* stdgnu++11.patch: new: fix ftbfs with boost1.83.Étienne Mollier2023-12-18
| | | | | | | boost1.83 looks to require building with gnu++11, but upstream codebase is still at gnu++98 for now, hence the nature of the patch. Closes: #1056010
* Fix salca-ci since i386 is explicitly excluded by Build-Depends: bowtie2Andreas Tille2021-09-09
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* Upload to unstableAndreas Tille2021-09-09
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* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, ↵Andreas Tille2021-09-09
| | | | | | | | | | Repository-Browse. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-bug-tracking See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
* Use secure URI in Homepage field.Andreas Tille2021-09-09
| | | | | | Changes-By: lintian-brush Fixes: lintian: homepage-field-uses-insecure-uri See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
* routine-update: Rules-Requires-Root: noAndreas Tille2021-09-09
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* routine-update: Add salsa-ci fileAndreas Tille2021-09-09
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* routine-update: debhelper-compat 13Andreas Tille2021-09-09
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* routine-update: Standards-Version: 4.6.0Andreas Tille2021-09-09
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* Normalize watch fileAndreas Tille2021-09-09
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* routine-update: Fix watchfile to detect new versions on githubSteffen Moeller2021-09-02
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* Update Michael's email addressMichael R. Crusoe2020-06-04
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* Ease cross-buildingMichael R. Crusoe2020-02-17
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* 1.3.3+dfsg-1Michael R. Crusoe2020-02-17
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* routine-update: Standards-Version: 4.5.0Michael R. Crusoe2020-02-17
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* Update upstream source from tag 'upstream/1.3.3+dfsg'Michael R. Crusoe2020-02-17
|\ | | | | | | Update to upstream version '1.3.3+dfsg' with Debian dir 28417103b14f92a44f8874be16c18e7a478b6384
| * New upstream version 1.3.3+dfsgMichael R. Crusoe2020-02-17
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* | routine-update: New upstream versionMichael R. Crusoe2020-02-17
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* | Update homepageMichael R. Crusoe2020-02-17
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* | Update metadata with ref to condaSteffen Möller2019-10-17
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* | Upload to unstableAndreas Tille2019-09-12
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* | debhelper-compat 12Andreas Tille2019-09-12
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* | s/python/python3/ in (Build-)DependsAndreas Tille2019-09-12
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* | Use 2to3 to port to Python3Andreas Tille2019-09-12
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* | Upload to unstableAndreas Tille2019-07-12
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* | Remove trailing whitespace in debian/changelogAndreas Tille2019-07-12
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* | Standards-Version: 4.4.0Andreas Tille2019-07-12
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* | debhelper 12Andreas Tille2019-07-12
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* | New upstream versionAndreas Tille2019-07-12
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* | Update upstream source from tag 'upstream/1.3.2+dfsg'Andreas Tille2019-07-12
|\| | | | | | | Update to upstream version '1.3.2+dfsg' with Debian dir 48f47abbee70e57e1895abff1b804785942f62ff
| * New upstream version 1.3.2+dfsgAndreas Tille2019-07-12
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* | Correct DOIValentin Marcon2019-03-22
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* | Upload to unstableAndreas Tille2018-09-26
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* | Remove unneeded get-orig-source targetAndreas Tille2018-09-26
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* | Fix Perl interpreter pathAndreas Tille2018-09-26
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* | Standards-Version: 4.2.1Andreas Tille2018-09-26
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