summaryrefslogtreecommitdiff
path: root/test/fixploidy.out
blob: 07e7cd857e2b6c08dcf94adf910e8de8159e8d89 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="All filters passed">
##contig=<ID=1,assembly=b37,length=249250621>
##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
##INFO=<ID=FLAG,Number=0,Type=Flag,Description="Test type">
##INFO=<ID=IINT,Number=1,Type=Integer,Description="Test type">
##INFO=<ID=IFLT,Number=1,Type=Float,Description="Test type">
##INFO=<ID=ISTR,Number=1,Type=String,Description="Test type">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=FINT,Number=1,Type=Integer,Description="Test type">
##FORMAT=<ID=FFLT,Number=1,Type=Float,Description="Test type">
##FORMAT=<ID=FSTR,Number=1,Type=String,Description="Test type">
##FILTER=<ID=q11,Description="Quality below 10">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A	B	C
1	3000001	xx	C	CT	11	PASS	FLAG;IINT=11;IFLT=1.1;ISTR=xxx	GT:FINT:FFLT:FSTR	.:11:1.1:xxx	0:11:1.1:x	0|0:11:1.1:x
1	3000002	.	C	CTT	.	.	.	GT	././.	./././.	.|.|.|.|.
1	3000003	xx	C	CTTT	11	q11	FLAG;IINT=.;IFLT=.;ISTR=.	GT:FINT:FFLT:FSTR	0/0:.:.:.	0/0:.:.:.	0|0:.:.:.
1	3000004	xx	C	CTTTT	11	q11	FLAG;IINT=11;IFLT=1.1;ISTR=xxx	GT:FINT:FFLT:FSTR	0/0/0/0/0/0:11:1.1:x	0/0/0/0/0/0/0:11:1.1:xxx	0|0|0|0|0|0|0|0:11:1.1:xxx