diff options
Diffstat (limited to 'asn/asn.all')
| -rw-r--r-- | asn/asn.all | 25 |
1 files changed, 19 insertions, 6 deletions
diff --git a/asn/asn.all b/asn/asn.all index 1b3b2e5d..f1c2d87b 100644 --- a/asn/asn.all +++ b/asn/asn.all @@ -8,7 +8,7 @@ -- --********************************************************************** ---$Revision: 6.3 $ +--$Revision: 6.4 $ --********************************************************************** -- -- NCBI General Data elements @@ -97,7 +97,8 @@ Person-id ::= CHOICE { name Name-std , -- structured name ml VisibleString , -- MEDLINE name (semi-structured) -- eg. "Jones RM" - str VisibleString } -- unstructured name + str VisibleString, -- unstructured name + consortium VisibleString } -- consortium name Name-std ::= SEQUENCE { -- Structured names last VisibleString , @@ -737,7 +738,7 @@ Seq-loc-equiv ::= SET OF Seq-loc -- for a set of equivalent locations END ---$Revision: 6.5 $ +--$Revision: 6.6 $ --********************************************************************** -- -- NCBI Sequence elements @@ -866,13 +867,21 @@ MolInfo ::= SEQUENCE { other (255) } -- use Source.techexp DEFAULT unknown , techexp VisibleString OPTIONAL , -- explanation if tech not enough + -- + -- Completeness is not indicated in most records. For genomes, assume + -- the sequences are incomplete unless specifically marked as complete. + -- For mRNAs, assume the ends are not known exactly unless marked as + -- having the left or right end. + -- completeness INTEGER { unknown (0) , complete (1) , -- complete biological entity partial (2) , -- partial but no details given - no-left (3), -- missing 5' or NH3 end + no-left (3) , -- missing 5' or NH3 end no-right (4) , -- missing 3' or COOH end no-ends (5) , -- missing both ends + has-left (6) , -- 5' or NH3 end present + has-right (7) , -- 3' or COOH end present other (255) } DEFAULT unknown } @@ -1501,7 +1510,7 @@ PDB-replace ::= SEQUENCE { END ---$Revision: 6.7 $ +--$Revision: 6.9 $ --********************************************************************** -- -- NCBI Sequence Feature elements @@ -1781,7 +1790,8 @@ Gene-ref ::= SEQUENCE { maploc VisibleString OPTIONAL , -- descriptive map location pseudo BOOLEAN DEFAULT FALSE , -- pseudogene db SET OF Dbtag OPTIONAL , -- ids in other dbases - syn SET OF VisibleString OPTIONAL } -- synonyms for locus + syn SET OF VisibleString OPTIONAL , -- synonyms for locus + locus-tag VisibleString OPTIONAL } -- systematic gene name (e.g., MI0001, ORF0069) END @@ -1864,6 +1874,9 @@ OrgMod ::= SEQUENCE { anamorph (29) , teleomorph (30) , breed (31) , + gb-acronym (32) , -- used by taxonomy database + gb-anamorph (33) , -- used by taxonomy database + gb-synonym (34) , -- used by taxonomy database old-lineage (253) , old-name (254) , other (255) } , -- ASN5: old-name (254) will be added to next spec |